RLG00000012506

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0019861
Physical Location & Seq
Reverse (-)
19375379 .. 19377504
2126 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012506

Sequence Viewer

Length: 363 bp
ATGTCGTCGGTGGTGATACCGGGTCGGGTCTCGGGTCGCTTCTGCTGGAGGCTAGAGCGTCTTTCTGTGGACTATGGGAAAACGTCCGAGCTCGGATTCACTGTGTATCCTTCTCCTCAGGTTTCTACGTCTGTTGTAGAGCCCTGTAACAGTGTCCTCTCCACTCATTCTCTGCTTGAGCACGCCGATGCGTCTGTTTTGCTCGATAATGAGGCCATCTGCGACATCTGCCGCCAATCTCTGGACATTGAGCGTCCCACTTACACCAATCTCAATCGCCTCATCTCTCAGGGGACGATTACAAGATTAAAGTTTGGAACTACAAGATGCATAGATGTCTTTTTACTCTTCTCAGGCATCTAG

Protein Analysis

121

Amino Acids

13.31

Weight (kDa)

6.06

Isoelectric Point (pI)

31.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 18 - 77 1.7e-09 Tubulin/FtsZ family, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019861)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0344731 RchiOBHm_Chr2g0112001 RchiOBHm_Chr2g0153431
rosa_laevigata RLG00000012506 RLG00000021609 RLG00000035396
rosa_multiflora Rmu_sc0006888.1_g000019

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 241
AciI CCGC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 241
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw21I GWGCWC 2 cut(s) 93, 183
Alw26I GTCTC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 1 cut(s) 213
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 117
BanII GRGCYC 2 cut(s) 93, 144
Bbv12I GWGCWC 2 cut(s) 93, 183
BccI CCATC 1 cut(s) 224
BciVI GTATCC 1 cut(s) 117
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 34
BfaI CTAG 2 cut(s) 53, 361
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 2 cut(s) 178, 317
BpmI CTGGAG 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse21I CCTNAGG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 2 cut(s) 131, 302
BseRI GAGGAG 1 cut(s) 105
BshFI GGCC 1 cut(s) 215
BsiHKAI GWGCWC 2 cut(s) 93, 183
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 2 cut(s) 240, 307
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 2 cut(s) 240, 307
BsnI GGCC 1 cut(s) 215
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 31
Bsp1286I GDGCHC 3 cut(s) 93, 144, 183
BspACI CCGC 1 cut(s) 232
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 2 cut(s) 130, 301
BspTNI GGTCTC 1 cut(s) 34
Bst4CI ACNGT 2 cut(s) 103, 152
Bst6I CTCTTC 1 cut(s) 353
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 3 cut(s) 117, 288, 352
BstMAI GTCTC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 19
Bsu36I CCTNAGG 1 cut(s) 117
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 1 cut(s) 215
BtsIMutI CAGTG 2 cut(s) 99, 157
Cac8I GCNNGC 1 cut(s) 183
CseI GACGC 3 cut(s) 47, 180, 242
CviJI RGCY 4 cut(s) 52, 91, 142, 215
CviKI_1 RGCY 4 cut(s) 52, 91, 142, 215
DdeI CTNAG 3 cut(s) 117, 288, 352
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 93, 144
Eco31I GGTCTC 1 cut(s) 34
Eco53kI GAGCTC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 91
EcoT22I ATGCAT 1 cut(s) 332
EcoT38I GRGCYC 2 cut(s) 93, 144
FaiI YATR 2 cut(s) 75, 332
FaqI GGGAC 2 cut(s) 240, 307
Fnu4HI GCNGC 1 cut(s) 232
FriOI GRGCYC 2 cut(s) 93, 144
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 2 cut(s) 53, 361
GluI GCNGC 1 cut(s) 232
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 20
HgaI GACGC 3 cut(s) 47, 180, 242
HinfI GANTC 1 cut(s) 96
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 88, 95
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 2 cut(s) 103, 152
HpyCH4IV ACGT 2 cut(s) 83, 128
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 228
HpyF3I CTNAG 3 cut(s) 117, 288, 352
HpySE526I ACGT 2 cut(s) 83, 128
LpnPI CCDG 7 cut(s) 31, 33, 104, 157, 227, 275, 339
LweI GCATC 2 cut(s) 178, 317
MaeI CTAG 2 cut(s) 53, 361
MaeII ACGT 2 cut(s) 83, 128
MaeIII GTNAC 1 cut(s) 146
MboII GAAGA 1 cut(s) 340
MhlI GDGCHC 3 cut(s) 93, 144, 183
MnlI CCTC 5 cut(s) 42, 126, 167, 205, 290
Mph1103I ATGCAT 1 cut(s) 332
MseI TTAA 1 cut(s) 308
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 228
NciI CCSGG 1 cut(s) 21
NsiI ATGCAT 1 cut(s) 332
PfeI GAWTC 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 1 cut(s) 93
SaqAI TTAA 1 cut(s) 308
SatI GCNGC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 3 cut(s) 93, 144, 183
SetI ASST 4 cut(s) 86, 93, 123, 131
SfaNI GCATC 2 cut(s) 178, 317
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SsiI CCGC 1 cut(s) 232
SspMI CTAG 2 cut(s) 53, 361
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 2 cut(s) 103, 152
TaiI ACGT 2 cut(s) 86, 131
TaqI TCGA 1 cut(s) 204
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 1 cut(s) 96
Tru1I TTAA 1 cut(s) 308
Tru9I TTAA 1 cut(s) 308
TscAI CASTG 2 cut(s) 106, 157
TspRI CASTG 2 cut(s) 106, 157
Van91I CCANNNNNTGG 1 cut(s) 241
XspI CTAG 2 cut(s) 53, 361
Zsp2I ATGCAT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.