RchiOBHm_Chr2g0153431

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019861
Physical Location & Seq
Forward (+)
70749709 .. 70749999
291 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52250

Sequence Viewer

Length: 291 bp
ATGTCGTCGGTGGTGATACCGGGTCGGGTCTCGGGTGGCTTCTGCTGGAGGCTGGAGCGTCTTTCTGTGGACTATGGGAAAACGGCCGAGCTCGAATTCGCTGTGTATCCTTCTCCTCAGGTTTCTACGTCTGTTGTAGAGCCCTGTAACAGTGTCCTCTCCACTCATTCTCTACTTGAGCACACCGATGCGTCTGTTTTGCTCAATAATGAGGCCATCTACGACATCTGCCGCCGATCTCTGGACATTGAGCGTCCCACTTACACCAATCTCAATCGCCTCATCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

96

Amino Acids

10.69

Weight (kDa)

5.21

Isoelectric Point (pI)

41.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 18 - 77 1.2e-09 Tubulin/FtsZ family, GTPase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019861)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0344731 RchiOBHm_Chr2g0112001 RchiOBHm_Chr2g0153431
rosa_laevigata RLG00000012506 RLG00000021609 RLG00000035396
rosa_multiflora Rmu_sc0006888.1_g000019

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 241
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
Alw21I GWGCWC 2 cut(s) 93, 183
Alw26I GTCTC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 2 cut(s) 84, 213
ApoI RAATTY 1 cut(s) 95
AsuC2I CCSGG 1 cut(s) 21
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 31
AxyI CCTNAGG 1 cut(s) 117
BanII GRGCYC 2 cut(s) 93, 144
Bbv12I GWGCWC 2 cut(s) 93, 183
BccI CCATC 1 cut(s) 224
BceAI ACGGC 1 cut(s) 99
BciVI GTATCC 1 cut(s) 117
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 34
BfuI GTATCC 1 cut(s) 117
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 21
BmeT110I CYCGRG 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 21
BmsI GCATC 1 cut(s) 178
BpmI CTGGAG 2 cut(s) 67, 74
BpuEI CTTGAG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 21
BsaI GGTCTC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse21I CCTNAGG 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 131
BseRI GAGGAG 1 cut(s) 105
BseX3I CGGCCG 1 cut(s) 84
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 86, 215
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 2 cut(s) 93, 183
BsiHKCI CYCGRG 1 cut(s) 31
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 240
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 240
BsnI GGCC 2 cut(s) 86, 215
Bso31I GGTCTC 1 cut(s) 34
BsoBI CYCGRG 1 cut(s) 31
Bsp1286I GDGCHC 3 cut(s) 93, 144, 183
Bsp143I GATC 1 cut(s) 236
BspACI CCGC 1 cut(s) 232
BspANI GGCC 2 cut(s) 86, 215
BspCNI CTCAG 1 cut(s) 130
BspTNI GGTCTC 1 cut(s) 34
BssMI GATC 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 117, 288
BstKTI GATC 1 cut(s) 239
BstMAI GTCTC 1 cut(s) 34
BstMBI GATC 1 cut(s) 236
BstMCI CGRYCG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 19
BstZI CGGCCG 1 cut(s) 84
Bsu36I CCTNAGG 1 cut(s) 117
BsuI GTATCC 1 cut(s) 117
BsuRI GGCC 2 cut(s) 86, 215
BtsIMutI CAGTG 1 cut(s) 157
CseI GACGC 3 cut(s) 47, 180, 242
CviJI RGCY 6 cut(s) 39, 52, 86, 91, 142, 215
CviKI_1 RGCY 6 cut(s) 39, 52, 86, 91, 142, 215
DdeI CTNAG 2 cut(s) 117, 288
DpnI GATC 1 cut(s) 238
DpnII GATC 1 cut(s) 236
EaeI YGGCCR 1 cut(s) 84
EagI CGGCCG 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 91
EclXI CGGCCG 1 cut(s) 84
Eco24I GRGCYC 2 cut(s) 93, 144
Eco31I GGTCTC 1 cut(s) 34
Eco52I CGGCCG 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 91
Eco81I CCTNAGG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 31
EcoICRI GAGCTC 1 cut(s) 91
EcoRI GAATTC 1 cut(s) 95
EcoT38I GRGCYC 2 cut(s) 93, 144
FaiI YATR 1 cut(s) 75
FaqI GGGAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 232
FriOI GRGCYC 2 cut(s) 93, 144
Fsp4HI GCNGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 232
GsuI CTGGAG 2 cut(s) 67, 74
HaeIII GGCC 2 cut(s) 86, 215
HapII CCGG 1 cut(s) 20
HgaI GACGC 3 cut(s) 47, 180, 242
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 70
Hpy188III TCNNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 120
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 128
HpyF3I CTNAG 2 cut(s) 117, 288
HpySE526I ACGT 1 cut(s) 128
Kzo9I GATC 1 cut(s) 236
LmnI GCTCC 1 cut(s) 55
LpnPI CCDG 6 cut(s) 31, 33, 38, 104, 157, 227
LweI GCATC 1 cut(s) 178
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 1 cut(s) 146
MalI GATC 1 cut(s) 238
MboI GATC 1 cut(s) 236
MhlI GDGCHC 3 cut(s) 93, 144, 183
MluCI AATT 1 cut(s) 95
MnlI CCTC 5 cut(s) 42, 126, 167, 205, 290
MslI CAYNNNNRTG 1 cut(s) 186
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 21
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 236
NmeAIII GCCGAG 1 cut(s) 112
PkrI GCNGC 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 186
SacI GAGCTC 1 cut(s) 93
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 21
SduI GDGCHC 3 cut(s) 93, 144, 183
SetI ASST 3 cut(s) 93, 123, 131
SfaNI GCATC 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 1 cut(s) 95
SsiI CCGC 1 cut(s) 232
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 19
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 95
TauI GCSGC 1 cut(s) 234
TscAI CASTG 1 cut(s) 157
TspRI CASTG 1 cut(s) 157
XapI RAATTY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.