Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019847

Physical Location & Seq

Genomic Coordinates Reverse (-)

42596189 .. 42597571

Gene Structure 1383 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57547

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAGAAGCTCTTCTTCCACTTTGCAACCTCGATCACTATGCCTAGGTCTGTTCTTTGATCCCTTATCCCAATTCTTTATATTCAATTTGTTATTGGATCTTGAATTATTTTGCTCTTACTCTCTCCTCTTATGCTTCACCACCGAGGCCCGACCGCCGGCGTTGTACTCTGGCTTGGGGCCTACTAAGGCCGGCGAGAAGCCGAGGGTGCTGGTGCTGGGGACGGGGTGGGCTGGGTGTCGGCTCATGAAGGGGTTGGACACGAAGCTATACGACGTCGTTTGCGTCTCGCCGAGGAATCACATGGTGTTCACGCCGCTGCTGGATCCACATGTGTGGGGACTGTGGAGTTTAGGTCGGTGGCAGAGCCAACTGGGAGGATCCAACCTGCCATTTCGAGGGAGCCAGGGTCGTATTTCTTTCTGTCCAATTGTACTGGGCTCGATACGGATAAGCATTTGGTACAATCGTTGTGGTTTGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005777 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031304 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0098573 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

161

Amino Acids

18.01

Weight (kDa)

9.27

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0349501
rosa_laevigata	RLG00000007633 RLG00000011763 RLG00000026658 RLG00000027828
rosa_multiflora	Rmu_sc0000611.1_g000013 Rmu_sc0003311.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	396
AciI	CCGC	2 cut(s)	155, 317
AclWI	GGATC	6 cut(s)	53, 105, 320, 333, 375, 388
AcyI	GRCGYC	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	307
AfaI	GTAC	4 cut(s)	167, 435, 464, 482
AfiI	CCNNNNNNNGG	2 cut(s)	157, 398
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	85, 104
AjnI	CCWGG	1 cut(s)	405
AleI	CACNNNNGTG	1 cut(s)	334
AluBI	AGCT	2 cut(s)	9, 268
AluI	AGCT	2 cut(s)	9, 268
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	6 cut(s)	53, 105, 320, 333, 375, 388
AoxI	GGCC	3 cut(s)	147, 179, 189
ApeKI	GCWGC	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	10
AspA2I	CCTAGG	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	148, 179
AsuHPI	GGTGA	1 cut(s)	130
AvrII	CCTAGG	1 cut(s)	43
BaeI	ACNNNNGTAYC	1 cut(s)	454
BamHI	GGATCC	2 cut(s)	325, 380
BanII	GRGCYC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	306
BcgI	CGANNNNNNTGC	2 cut(s)	21, 55
BciT130I	CCWGG	1 cut(s)	407
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	317, 320
BlnI	CCTAGG	1 cut(s)	43
BlsI	GCNGC	2 cut(s)	318, 321
Bme1390I	CCNGG	1 cut(s)	407
BmgT120I	GGNCC	2 cut(s)	148, 179
BmiI	GGNNCC	4 cut(s)	180, 327, 382, 404
BmrFI	CCNGG	1 cut(s)	407
BmrI	ACTGGG	2 cut(s)	383, 446
BmuI	ACTGGG	2 cut(s)	383, 446
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	5 cut(s)	43, 144, 203, 293, 406
BsaXI	ACNNNNNCTCC	4 cut(s)	340, 370, 394, 424
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 398
Bse118I	RCCGGY	2 cut(s)	157, 191
Bse1I	ACTGG	2 cut(s)	378, 441
BseBI	CCWGG	1 cut(s)	407
BseDI	CCNNGG	5 cut(s)	43, 144, 203, 293, 406
BseLI	CCNNNNNNNGG	2 cut(s)	157, 398
BseNI	ACTGG	2 cut(s)	378, 441
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	306
BseYI	CCCAGC	2 cut(s)	217, 233
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	149, 181, 191
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	158, 192
BslFI	GGGAC	2 cut(s)	235, 354
BslI	CCNNNNNNNGG	2 cut(s)	157, 398
BsmAI	GTCTC	1 cut(s)	292
BsmBI	CGTCTC	1 cut(s)	292
BsmFI	GGGAC	2 cut(s)	235, 354
BsnI	GGCC	3 cut(s)	149, 181, 191
Bsp1286I	GDGCHC	1 cut(s)	443
Bsp143I	GATC	5 cut(s)	32, 58, 97, 325, 380
BspACI	CCGC	2 cut(s)	155, 317
BspANI	GGCC	3 cut(s)	149, 181, 191
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	4 cut(s)	180, 327, 382, 404
BspMI	ACCTGC	1 cut(s)	396
BspPI	GGATC	6 cut(s)	53, 105, 320, 333, 375, 388
BspQI	GCTCTTC	1 cut(s)	16
BsrFI	RCCGGY	2 cut(s)	157, 191
BsrI	ACTGG	2 cut(s)	378, 441
BssAI	RCCGGY	2 cut(s)	157, 191
BssECI	CCNNGG	5 cut(s)	43, 144, 203, 293, 406
BssMI	GATC	5 cut(s)	32, 58, 97, 325, 380
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	159, 193
BstDEI	CTNAG	1 cut(s)	186
BstKTI	GATC	5 cut(s)	35, 61, 100, 328, 383
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	5 cut(s)	32, 58, 97, 325, 380
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	407
BstNSI	RCATGY	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	405
BstV1I	GCAGC	1 cut(s)	306
BstX2I	RGATCY	3 cut(s)	97, 325, 380
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstYI	RGATCY	3 cut(s)	97, 325, 380
BsuRI	GGCC	3 cut(s)	149, 181, 191
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	159, 193
CciI	TCATGA	1 cut(s)	246
Cfr10I	RCCGGY	2 cut(s)	157, 191
Cfr13I	GGNCC	2 cut(s)	148, 179
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	4 cut(s)	166, 434, 463, 481
CspCI	CAANNNNNGTGG	1 cut(s)	454
CviAII	CATG	3 cut(s)	247, 304, 332
CviQI	GTAC	4 cut(s)	166, 434, 463, 481
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	5 cut(s)	34, 60, 99, 327, 382
DpnII	GATC	5 cut(s)	32, 58, 97, 325, 380
DraIII	CACNNNGTG	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	443
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	405
EcoT14I	CCWWGG	1 cut(s)	43
EcoT38I	GRGCYC	1 cut(s)	443
ErhI	CCWWGG	1 cut(s)	43
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	3 cut(s)	250, 307, 335
FaiI	YATR	7 cut(s)	40, 80, 133, 248, 271, 305, 333
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	2 cut(s)	235, 354
FatI	CATG	3 cut(s)	246, 303, 331
Fnu4HI	GCNGC	2 cut(s)	317, 320
FriOI	GRGCYC	1 cut(s)	443
Fsp4HI	GCNGC	2 cut(s)	317, 320
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	2 cut(s)	317, 320
GsaI	CCCAGC	2 cut(s)	221, 237
HaeIII	GGCC	3 cut(s)	149, 181, 191
HapII	CCGG	2 cut(s)	158, 192
HgaI	GACGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	3 cut(s)	250, 307, 335
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	2 cut(s)	158, 192
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188III	TCNNGA	2 cut(s)	101, 247
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	2 cut(s)	278, 281
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	3 cut(s)	250, 307, 335
KroI	GCCGGC	2 cut(s)	157, 191
KroNI	GCCGGC	2 cut(s)	159, 193
Kzo9I	GATC	5 cut(s)	32, 58, 97, 325, 380
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	402
Lsp1109I	GCAGC	1 cut(s)	306
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	1 cut(s)	276
MalI	GATC	5 cut(s)	34, 60, 99, 327, 382
MboI	GATC	5 cut(s)	32, 58, 97, 325, 380
MboII	GAAGA	2 cut(s)	3, 6
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	3 cut(s)	97, 325, 380
MhlI	GDGCHC	1 cut(s)	443
MluCI	AATT	4 cut(s)	71, 85, 104, 429
MmeI	TCCRAC	2 cut(s)	237, 408
MnlI	CCTC	7 cut(s)	39, 137, 139, 198, 288, 371, 392
MreI	CGCCGGCG	1 cut(s)	157
MroNI	GCCGGC	2 cut(s)	157, 191
MroXI	GAANNNNTTC	1 cut(s)	10
MslI	CAYNNNNRTG	1 cut(s)	334
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	2 cut(s)	158, 192
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	208
NaeI	GCCGGC	2 cut(s)	159, 193
NdeII	GATC	5 cut(s)	32, 58, 97, 325, 380
NgoMIV	GCCGGC	2 cut(s)	157, 191
NlaIII	CATG	3 cut(s)	250, 307, 335
NlaIV	GGNNCC	4 cut(s)	180, 327, 382, 404
NmeAIII	GCCGAG	2 cut(s)	228, 318
NspI	RCATGY	1 cut(s)	335
OliI	CACNNNNGTG	1 cut(s)	334
PagI	TCATGA	1 cut(s)	246
PciI	ACATGT	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdiI	GCCGGC	2 cut(s)	159, 193
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	318, 321
PscI	ACATGT	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	405
PspFI	CCCAGC	2 cut(s)	217, 233
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	4 cut(s)	180, 327, 382, 404
PspPI	GGNCC	2 cut(s)	148, 179
PsuI	RGATCY	3 cut(s)	97, 325, 380
RsaI	GTAC	4 cut(s)	167, 435, 464, 482
RsaNI	GTAC	4 cut(s)	166, 434, 463, 481
RseI	CAYNNNNRTG	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	16
SatI	GCNGC	2 cut(s)	317, 320
Sau3AI	GATC	5 cut(s)	32, 58, 97, 325, 380
Sau96I	GGNCC	2 cut(s)	148, 179
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	443
SetI	ASST	7 cut(s)	11, 31, 49, 270, 279, 358, 390
SgrAI	CRCCGGYG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	334
Sse9I	AATT	4 cut(s)	71, 85, 104, 429
SsiI	CCGC	2 cut(s)	155, 317
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	31, 397, 443
TasI	AATT	4 cut(s)	71, 85, 104, 429
TatI	WGTACW	3 cut(s)	165, 433, 480
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	263
TspGWI	ACGGA	1 cut(s)	463
XceI	RCATGY	1 cut(s)	335
XmaJI	CCTAGG	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	1 cut(s)	44
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.