Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000611.1

Orthogroup ID

OG0019847

Physical Location & Seq

Genomic Coordinates Forward (+)

40424 .. 42908

Gene Structure 2485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000611.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgtctctttatgacgattgcatgtgcgtgagcttggaggtcgagcctttagccttggagttcgtggtcatgatccttataggtctgttctttgatcccttatcccaattctttatattcaatttgttattggatcttgaattattttgctcttactctctcctcttatgcttcaccaccgaggcccgaccgccggcgttgtactccagcttggggcctactaaggccggcgagaagctgagggtgctggtgctggggacggggtgggctgggtgtcggctcatgaaggggttggacacgaagctatacgacgtcgtttgcgtctcaccgaggaatcacatggtgttcacgccgctgctggatccacttgtgcggggactgtggagtttagacgaagtttactacttccctcagggccacattgaacaggttctcttctcccctgacatttattacttgttaattatgctttctttgctgccccttactctcttttggtctcctggagatgcagcagacgaatgggaagatgaagagaaggcgaagatggagaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005777 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031304 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0098573 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

185

Amino Acids

21.09

Weight (kDa)

4.37

Isoelectric Point (pI)

42.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0349501
rosa_laevigata	RLG00000007633 RLG00000011763 RLG00000026658 RLG00000027828
rosa_multiflora	Rmu_sc0000611.1_g000013 Rmu_sc0003311.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	315
AciI	CCGC	3 cut(s)	191, 353, 373
AclWI	GGATC	5 cut(s)	67, 89, 141, 356, 369
AcyI	GRCGYC	1 cut(s)	312
AdeI	CACNNNGTG	1 cut(s)	343
AfaI	GTAC	1 cut(s)	203
AfiI	CCNNNNNNNGG	2 cut(s)	193, 213
AgsI	TTSAA	3 cut(s)	121, 140, 425
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	4 cut(s)	33, 210, 238, 304
AluI	AGCT	4 cut(s)	33, 210, 238, 304
Alw26I	GTCTC	3 cut(s)	9, 328, 504
AlwI	GGATC	5 cut(s)	67, 89, 141, 356, 369
AoxI	GGCC	4 cut(s)	183, 215, 225, 415
ApeKI	GCWGC	3 cut(s)	355, 478, 512
Asp700I	GAANNNNTTC	1 cut(s)	429
AspS9I	GGNCC	3 cut(s)	184, 215, 415
AsuHPI	GGTGA	2 cut(s)	166, 318
AxyI	CCTNAGG	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	361
BbvCI	CCTCAGC	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	342, 465, 524
BccI	CCATC	1 cut(s)	541
BciT130I	CCWGG	1 cut(s)	504
BcoDI	GTCTC	3 cut(s)	9, 328, 504
BisI	GCNGC	4 cut(s)	353, 356, 479, 513
BlsI	GCNGC	4 cut(s)	354, 357, 480, 514
Bme1390I	CCNGG	1 cut(s)	504
BmgT120I	GGNCC	3 cut(s)	184, 215, 415
BmiI	GGNNCC	2 cut(s)	216, 363
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	1 cut(s)	499
BpmI	CTGGAG	2 cut(s)	190, 525
Bpu10I	CCTNAGC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	504
BsaJI	CCNNGG	3 cut(s)	54, 180, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 213
Bse118I	RCCGGY	2 cut(s)	193, 227
Bse21I	CCTNAGG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	3 cut(s)	54, 180, 329
BseLI	CCNNNNNNNGG	2 cut(s)	193, 213
BseMII	CTCAG	2 cut(s)	230, 425
BseRI	GAGGAG	1 cut(s)	152
BseXI	GCAGC	3 cut(s)	342, 465, 524
BseYI	CCCAGC	2 cut(s)	253, 269
Bsh1285I	CGRYCG	1 cut(s)	191
BshFI	GGCC	4 cut(s)	185, 217, 227, 417
BsiEI	CGRYCG	1 cut(s)	191
BsiSI	CCGG	2 cut(s)	194, 228
BslFI	GGGAC	2 cut(s)	271, 390
BslI	CCNNNNNNNGG	2 cut(s)	193, 213
BsmAI	GTCTC	3 cut(s)	9, 328, 504
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	2 cut(s)	271, 390
BsnI	GGCC	4 cut(s)	185, 217, 227, 417
Bso31I	GGTCTC	1 cut(s)	504
Bsp143I	GATC	4 cut(s)	72, 94, 133, 361
BspACI	CCGC	3 cut(s)	191, 353, 373
BspANI	GGCC	4 cut(s)	185, 217, 227, 417
BspCNI	CTCAG	2 cut(s)	231, 424
BspHI	TCATGA	2 cut(s)	69, 282
BspLI	GGNNCC	2 cut(s)	216, 363
BspPI	GGATC	5 cut(s)	67, 89, 141, 356, 369
BspTNI	GGTCTC	1 cut(s)	504
BsrFI	RCCGGY	2 cut(s)	193, 227
BssAI	RCCGGY	2 cut(s)	193, 227
BssECI	CCNNGG	3 cut(s)	54, 180, 329
BssMI	GATC	4 cut(s)	72, 94, 133, 361
BssNI	GRCGYC	1 cut(s)	312
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	2 cut(s)	440, 528
BstACI	GRCGYC	1 cut(s)	312
BstC8I	GCNNGC	2 cut(s)	195, 229
BstDEI	CTNAG	3 cut(s)	222, 239, 411
BstKTI	GATC	4 cut(s)	75, 97, 136, 364
BstMAI	GTCTC	3 cut(s)	9, 328, 504
BstMBI	GATC	4 cut(s)	72, 94, 133, 361
BstMCI	CGRYCG	1 cut(s)	191
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 475
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	502
BstV1I	GCAGC	3 cut(s)	342, 465, 524
BstX2I	RGATCY	2 cut(s)	133, 361
BstYI	RGATCY	2 cut(s)	133, 361
Bsu36I	CCTNAGG	1 cut(s)	411
BsuRI	GGCC	4 cut(s)	185, 217, 227, 417
Cac8I	GCNNGC	2 cut(s)	195, 229
CciI	TCATGA	2 cut(s)	69, 282
Cfr10I	RCCGGY	2 cut(s)	193, 227
Cfr13I	GGNCC	3 cut(s)	184, 215, 415
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	4 cut(s)	22, 70, 283, 340
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	3 cut(s)	222, 239, 411
DpnI	GATC	4 cut(s)	74, 96, 135, 363
DpnII	GATC	4 cut(s)	72, 94, 133, 361
DraIII	CACNNNGTG	1 cut(s)	343
Eam1104I	CTCTTC	2 cut(s)	440, 528
EarI	CTCTTC	2 cut(s)	440, 528
Eco130I	CCWWGG	1 cut(s)	54
Eco31I	GGTCTC	1 cut(s)	504
Eco81I	CCTNAGG	1 cut(s)	411
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	4 cut(s)	25, 73, 286, 343
FaqI	GGGAC	2 cut(s)	271, 390
FatI	CATG	4 cut(s)	21, 69, 282, 339
FauI	CCCGC	1 cut(s)	366
Fnu4HI	GCNGC	4 cut(s)	353, 356, 479, 513
Fsp4HI	GCNGC	4 cut(s)	353, 356, 479, 513
GluI	GCNGC	4 cut(s)	353, 356, 479, 513
GsaI	CCCAGC	2 cut(s)	257, 273
GsuI	CTGGAG	2 cut(s)	190, 525
HaeIII	GGCC	4 cut(s)	185, 217, 227, 417
HapII	CCGG	2 cut(s)	194, 228
HgaI	GACGC	1 cut(s)	310
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	4 cut(s)	25, 73, 286, 343
HinfI	GANTC	1 cut(s)	334
HpaII	CCGG	2 cut(s)	194, 228
HphI	GGTGA	2 cut(s)	166, 318
Hpy166II	GTNNAC	2 cut(s)	348, 400
Hpy188III	TCNNGA	3 cut(s)	70, 137, 283
Hpy8I	GTNNAC	2 cut(s)	348, 400
Hpy99I	CGWCG	2 cut(s)	314, 317
HpyAV	CCTTC	2 cut(s)	280, 532
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	1 cut(s)	312
HpyCH4V	TGCA	2 cut(s)	21, 512
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 475
HpyF3I	CTNAG	3 cut(s)	222, 239, 411
HpySE526I	ACGT	1 cut(s)	312
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	4 cut(s)	25, 73, 286, 343
KroI	GCCGGC	2 cut(s)	193, 227
KroNI	GCCGGC	2 cut(s)	195, 229
Kzo9I	GATC	4 cut(s)	72, 94, 133, 361
Lsp1109I	GCAGC	3 cut(s)	342, 465, 524
LweI	GCATC	1 cut(s)	499
MaeII	ACGT	1 cut(s)	312
MalI	GATC	4 cut(s)	74, 96, 135, 363
MboI	GATC	4 cut(s)	72, 94, 133, 361
MboII	GAAGA	4 cut(s)	427, 539, 545, 556
MflI	RGATCY	2 cut(s)	133, 361
MluCI	AATT	4 cut(s)	107, 121, 140, 462
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	6 cut(s)	31, 173, 175, 234, 324, 420
MreI	CGCCGGCG	1 cut(s)	193
MroNI	GCCGGC	2 cut(s)	193, 227
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	1 cut(s)	461
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	2 cut(s)	194, 228
MspR9I	CCNGG	1 cut(s)	504
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	2 cut(s)	244, 475
NaeI	GCCGGC	2 cut(s)	195, 229
NdeII	GATC	4 cut(s)	72, 94, 133, 361
NgoMIV	GCCGGC	2 cut(s)	193, 227
NlaIII	CATG	4 cut(s)	25, 73, 286, 343
NlaIV	GGNNCC	2 cut(s)	216, 363
NspI	RCATGY	1 cut(s)	25
PagI	TCATGA	2 cut(s)	69, 282
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PdiI	GCCGGC	2 cut(s)	195, 229
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	502
PkrI	GCNGC	4 cut(s)	354, 357, 480, 514
Psp6I	CCWGG	1 cut(s)	502
PspFI	CCCAGC	2 cut(s)	253, 269
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	2 cut(s)	216, 363
PspPI	GGNCC	3 cut(s)	184, 215, 415
PsuI	RGATCY	2 cut(s)	133, 361
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	461
SatI	GCNGC	4 cut(s)	353, 356, 479, 513
Sau3AI	GATC	4 cut(s)	72, 94, 133, 361
Sau96I	GGNCC	3 cut(s)	184, 215, 415
ScrFI	CCNGG	1 cut(s)	504
SetI	ASST	8 cut(s)	35, 42, 85, 212, 240, 306, 315, 432
SfaNI	GCATC	1 cut(s)	499
SgrAI	CRCCGGYG	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	4 cut(s)	107, 121, 140, 462
SsiI	CCGC	3 cut(s)	191, 353, 373
StyD4I	CCNGG	1 cut(s)	502
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	1 cut(s)	315
TaqI	TCGA	1 cut(s)	42
TasI	AATT	4 cut(s)	107, 121, 140, 462
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TseI	GCWGC	3 cut(s)	355, 478, 512
TspDTI	ATGAA	2 cut(s)	299, 546
XceI	RCATGY	1 cut(s)	25
XmnI	GAANNNNTTC	1 cut(s)	429
ZraI	GACGTC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.