Internal alternative NAD(P)H-ubiquinone oxidoreductase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0349501 |
| rosa_laevigata | RLG00000007633 RLG00000011763 RLG00000026658 RLG00000027828 |
| rosa_multiflora | Rmu_sc0000611.1_g000013 Rmu_sc0003311.1_g000004 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 279 |
| AciI | CCGC | 2 cut(s) | 155, 317 |
| AclWI | GGATC | 4 cut(s) | 53, 105, 320, 333 |
| AcsI | RAATTY | 1 cut(s) | 85 |
| AcvI | CACGTG | 1 cut(s) | 332 |
| AcyI | GRCGYC | 1 cut(s) | 276 |
| AdeI | CACNNNGTG | 1 cut(s) | 307 |
| AfaI | GTAC | 1 cut(s) | 167 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 157, 177 |
| AflIII | ACRYGT | 1 cut(s) | 331 |
| AgsI | TTSAA | 1 cut(s) | 104 |
| AjnI | CCWGG | 1 cut(s) | 433 |
| AleI | CACNNNNGTG | 1 cut(s) | 334 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 340, 372 |
| AluBI | AGCT | 2 cut(s) | 9, 268 |
| AluI | AGCT | 2 cut(s) | 9, 268 |
| Alw26I | GTCTC | 2 cut(s) | 292, 435 |
| AlwI | GGATC | 4 cut(s) | 53, 105, 320, 333 |
| AoxI | GGCC | 3 cut(s) | 147, 179, 189 |
| ApeKI | GCWGC | 3 cut(s) | 319, 409, 443 |
| ApoI | RAATTY | 1 cut(s) | 85 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 10 |
| AspA2I | CCTAGG | 2 cut(s) | 43, 203 |
| AspS9I | GGNCC | 2 cut(s) | 148, 179 |
| AsuHPI | GGTGA | 1 cut(s) | 130 |
| AvrII | CCTAGG | 2 cut(s) | 43, 203 |
| BamHI | GGATCC | 1 cut(s) | 325 |
| BbrPI | CACGTG | 1 cut(s) | 332 |
| BbvI | GCAGC | 3 cut(s) | 306, 396, 455 |
| BccI | CCATC | 1 cut(s) | 472 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 21, 55 |
| BciT130I | CCWGG | 1 cut(s) | 435 |
| BcoDI | GTCTC | 2 cut(s) | 292, 435 |
| BfaI | CTAG | 2 cut(s) | 44, 204 |
| BisI | GCNGC | 4 cut(s) | 317, 320, 410, 444 |
| BlnI | CCTAGG | 2 cut(s) | 43, 203 |
| BlsI | GCNGC | 4 cut(s) | 318, 321, 411, 445 |
| Bme1390I | CCNGG | 1 cut(s) | 435 |
| BmgT120I | GGNCC | 2 cut(s) | 148, 179 |
| BmiI | GGNNCC | 2 cut(s) | 180, 327 |
| BmrFI | CCNGG | 1 cut(s) | 435 |
| BmsI | GCATC | 1 cut(s) | 430 |
| BpmI | CTGGAG | 1 cut(s) | 456 |
| BsaAI | YACGTR | 1 cut(s) | 332 |
| BsaHI | GRCGYC | 1 cut(s) | 276 |
| BsaI | GGTCTC | 1 cut(s) | 435 |
| BsaJI | CCNNGG | 4 cut(s) | 43, 144, 203, 293 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 340, 370 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 157, 177 |
| Bse118I | RCCGGY | 2 cut(s) | 157, 191 |
| BseBI | CCWGG | 1 cut(s) | 435 |
| BseDI | CCNNGG | 4 cut(s) | 43, 144, 203, 293 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 157, 177 |
| BseRI | GAGGAG | 1 cut(s) | 116 |
| BseXI | GCAGC | 3 cut(s) | 306, 396, 455 |
| BseYI | CCCAGC | 2 cut(s) | 217, 233 |
| Bsh1285I | CGRYCG | 1 cut(s) | 155 |
| BshFI | GGCC | 3 cut(s) | 149, 181, 191 |
| BsiEI | CGRYCG | 1 cut(s) | 155 |
| BsiSI | CCGG | 3 cut(s) | 158, 171, 192 |
| BslFI | GGGAC | 2 cut(s) | 235, 354 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 157, 177 |
| BsmAI | GTCTC | 2 cut(s) | 292, 435 |
| BsmBI | CGTCTC | 1 cut(s) | 292 |
| BsmFI | GGGAC | 2 cut(s) | 235, 354 |
| BsnI | GGCC | 3 cut(s) | 149, 181, 191 |
| Bso31I | GGTCTC | 1 cut(s) | 435 |
| Bsp143I | GATC | 4 cut(s) | 32, 58, 97, 325 |
| BspACI | CCGC | 2 cut(s) | 155, 317 |
| BspANI | GGCC | 3 cut(s) | 149, 181, 191 |
| BspHI | TCATGA | 1 cut(s) | 246 |
| BspLI | GGNNCC | 2 cut(s) | 180, 327 |
| BspPI | GGATC | 4 cut(s) | 53, 105, 320, 333 |
| BspQI | GCTCTTC | 1 cut(s) | 16 |
| BspTNI | GGTCTC | 1 cut(s) | 435 |
| BsrFI | RCCGGY | 2 cut(s) | 157, 191 |
| BssAI | RCCGGY | 2 cut(s) | 157, 191 |
| BssECI | CCNNGG | 4 cut(s) | 43, 144, 203, 293 |
| BssMI | GATC | 4 cut(s) | 32, 58, 97, 325 |
| BssNI | GRCGYC | 1 cut(s) | 276 |
| BssT1I | CCWWGG | 2 cut(s) | 43, 203 |
| Bst2UI | CCWGG | 1 cut(s) | 435 |
| Bst4CI | ACNGT | 1 cut(s) | 345 |
| Bst6I | CTCTTC | 4 cut(s) | 16, 366, 371, 459 |
| BstACI | GRCGYC | 1 cut(s) | 276 |
| BstBAI | YACGTR | 1 cut(s) | 332 |
| BstC8I | GCNNGC | 2 cut(s) | 159, 193 |
| BstDEI | CTNAG | 1 cut(s) | 186 |
| BstKTI | GATC | 4 cut(s) | 35, 61, 100, 328 |
| BstMAI | GTCTC | 2 cut(s) | 292, 435 |
| BstMBI | GATC | 4 cut(s) | 32, 58, 97, 325 |
| BstMCI | CGRYCG | 1 cut(s) | 155 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 208, 406 |
| BstNI | CCWGG | 1 cut(s) | 435 |
| BstSCI | CCNGG | 1 cut(s) | 433 |
| BstV1I | GCAGC | 3 cut(s) | 306, 396, 455 |
| BstX2I | RGATCY | 2 cut(s) | 97, 325 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 336 |
| BstYI | RGATCY | 2 cut(s) | 97, 325 |
| BsuRI | GGCC | 3 cut(s) | 149, 181, 191 |
| Cac8I | GCNNGC | 2 cut(s) | 159, 193 |
| CciI | TCATGA | 1 cut(s) | 246 |
| Cfr10I | RCCGGY | 2 cut(s) | 157, 191 |
| Cfr13I | GGNCC | 2 cut(s) | 148, 179 |
| CseI | GACGC | 1 cut(s) | 274 |
| Csp6I | GTAC | 1 cut(s) | 166 |
| CviAII | CATG | 2 cut(s) | 247, 304 |
| CviJI | RGCY | 9 cut(s) | 9, 149, 174, 181, 191, 202, 233, 244, 268 |
| CviKI_1 | RGCY | 9 cut(s) | 9, 149, 174, 181, 191, 202, 233, 244, 268 |
| CviQI | GTAC | 1 cut(s) | 166 |
| DdeI | CTNAG | 1 cut(s) | 186 |
| DpnI | GATC | 4 cut(s) | 34, 60, 99, 327 |
| DpnII | GATC | 4 cut(s) | 32, 58, 97, 325 |
| DraIII | CACNNNGTG | 1 cut(s) | 307 |
| Eam1104I | CTCTTC | 4 cut(s) | 16, 366, 371, 459 |
| EarI | CTCTTC | 4 cut(s) | 16, 366, 371, 459 |
| Eco130I | CCWWGG | 2 cut(s) | 43, 203 |
| Eco31I | GGTCTC | 1 cut(s) | 435 |
| Eco72I | CACGTG | 1 cut(s) | 332 |
| EcoO109I | RGGNCCY | 1 cut(s) | 179 |
| EcoRII | CCWGG | 1 cut(s) | 433 |
| EcoT14I | CCWWGG | 2 cut(s) | 43, 203 |
| ErhI | CCWWGG | 2 cut(s) | 43, 203 |
| Esp3I | CGTCTC | 1 cut(s) | 292 |
| FaeI | CATG | 2 cut(s) | 250, 307 |
| FaiI | YATR | 7 cut(s) | 40, 80, 133, 248, 271, 305, 398 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 30 |
| FaqI | GGGAC | 2 cut(s) | 235, 354 |
| FatI | CATG | 2 cut(s) | 246, 303 |
| Fnu4HI | GCNGC | 4 cut(s) | 317, 320, 410, 444 |
| Fsp4HI | GCNGC | 4 cut(s) | 317, 320, 410, 444 |
| FspBI | CTAG | 2 cut(s) | 44, 204 |
| GluI | GCNGC | 4 cut(s) | 317, 320, 410, 444 |
| GsaI | CCCAGC | 2 cut(s) | 221, 237 |
| GsuI | CTGGAG | 1 cut(s) | 456 |
| HaeIII | GGCC | 3 cut(s) | 149, 181, 191 |
| HapII | CCGG | 3 cut(s) | 158, 171, 192 |
| HgaI | GACGC | 1 cut(s) | 274 |
| Hin1I | GRCGYC | 1 cut(s) | 276 |
| Hin1II | CATG | 2 cut(s) | 250, 307 |
| HinfI | GANTC | 1 cut(s) | 298 |
| HpaII | CCGG | 3 cut(s) | 158, 171, 192 |
| HphI | GGTGA | 1 cut(s) | 130 |
| Hpy166II | GTNNAC | 1 cut(s) | 312 |
| Hpy188III | TCNNGA | 2 cut(s) | 101, 247 |
| Hpy8I | GTNNAC | 1 cut(s) | 312 |
| Hpy99I | CGWCG | 2 cut(s) | 278, 281 |
| HpyAV | CCTTC | 2 cut(s) | 244, 463 |
| HpyCH4III | ACNGT | 1 cut(s) | 345 |
| HpyCH4IV | ACGT | 2 cut(s) | 276, 331 |
| HpyCH4V | TGCA | 2 cut(s) | 25, 443 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 208, 406 |
| HpyF3I | CTNAG | 1 cut(s) | 186 |
| HpySE526I | ACGT | 2 cut(s) | 276, 331 |
| Hsp92I | GRCGYC | 1 cut(s) | 276 |
| Hsp92II | CATG | 2 cut(s) | 250, 307 |
| KroI | GCCGGC | 2 cut(s) | 157, 191 |
| KroNI | GCCGGC | 2 cut(s) | 159, 193 |
| Kzo9I | GATC | 4 cut(s) | 32, 58, 97, 325 |
| LguI | GCTCTTC | 1 cut(s) | 16 |
| Lsp1109I | GCAGC | 3 cut(s) | 306, 396, 455 |
| LweI | GCATC | 1 cut(s) | 430 |
| MaeI | CTAG | 2 cut(s) | 44, 204 |
| MaeII | ACGT | 2 cut(s) | 276, 331 |
| MalI | GATC | 4 cut(s) | 34, 60, 99, 327 |
| MboI | GATC | 4 cut(s) | 32, 58, 97, 325 |
| MboII | GAAGA | 8 cut(s) | 3, 6, 353, 358, 396, 470, 476, 487 |
| MflI | RGATCY | 2 cut(s) | 97, 325 |
| MluCI | AATT | 4 cut(s) | 71, 85, 104, 393 |
| MnlI | CCTC | 4 cut(s) | 39, 137, 139, 288 |
| MreI | CGCCGGCG | 1 cut(s) | 157 |
| MroNI | GCCGGC | 2 cut(s) | 157, 191 |
| MroXI | GAANNNNTTC | 1 cut(s) | 10 |
| MseI | TTAA | 2 cut(s) | 83, 392 |
| MslI | CAYNNNNRTG | 1 cut(s) | 334 |
| MspA1I | CMGCKG | 1 cut(s) | 319 |
| MspI | CCGG | 3 cut(s) | 158, 171, 192 |
| MspR9I | CCNGG | 1 cut(s) | 435 |
| MvaI | CCWGG | 1 cut(s) | 435 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 208, 406 |
| NaeI | GCCGGC | 2 cut(s) | 159, 193 |
| NdeII | GATC | 4 cut(s) | 32, 58, 97, 325 |
| NgoMIV | GCCGGC | 2 cut(s) | 157, 191 |
| NlaIII | CATG | 2 cut(s) | 250, 307 |
| NlaIV | GGNNCC | 2 cut(s) | 180, 327 |
| NmeAIII | GCCGAG | 1 cut(s) | 318 |
| OliI | CACNNNNGTG | 1 cut(s) | 334 |
| PagI | TCATGA | 1 cut(s) | 246 |
| PciSI | GCTCTTC | 1 cut(s) | 16 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 282 |
| PdiI | GCCGGC | 2 cut(s) | 159, 193 |
| PdmI | GAANNNNTTC | 1 cut(s) | 10 |
| PfeI | GAWTC | 1 cut(s) | 298 |
| PfoI | TCCNGGA | 1 cut(s) | 433 |
| PkrI | GCNGC | 4 cut(s) | 318, 321, 411, 445 |
| PmaCI | CACGTG | 1 cut(s) | 332 |
| PmlI | CACGTG | 1 cut(s) | 332 |
| Ppu21I | YACGTR | 1 cut(s) | 332 |
| Psp6I | CCWGG | 1 cut(s) | 433 |
| PspCI | CACGTG | 1 cut(s) | 332 |
| PspFI | CCCAGC | 2 cut(s) | 217, 233 |
| PspGI | CCWGG | 1 cut(s) | 433 |
| PspN4I | GGNNCC | 2 cut(s) | 180, 327 |
| PspPI | GGNCC | 2 cut(s) | 148, 179 |
| PsuI | RGATCY | 2 cut(s) | 97, 325 |
| RsaI | GTAC | 1 cut(s) | 167 |
| RsaNI | GTAC | 1 cut(s) | 166 |
| RseI | CAYNNNNRTG | 1 cut(s) | 334 |
| SapI | GCTCTTC | 1 cut(s) | 16 |
| SaqAI | TTAA | 2 cut(s) | 83, 392 |
| SatI | GCNGC | 4 cut(s) | 317, 320, 410, 444 |
| Sau3AI | GATC | 4 cut(s) | 32, 58, 97, 325 |
| Sau96I | GGNCC | 2 cut(s) | 148, 179 |
| ScrFI | CCNGG | 1 cut(s) | 435 |
| SetI | ASST | 7 cut(s) | 11, 31, 49, 270, 279, 334, 358 |
| SfaNI | GCATC | 1 cut(s) | 430 |
| SgrAI | CRCCGGYG | 1 cut(s) | 157 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 334 |
| Sse9I | AATT | 4 cut(s) | 71, 85, 104, 393 |
| SsiI | CCGC | 2 cut(s) | 155, 317 |
| SspMI | CTAG | 2 cut(s) | 44, 204 |
| StyD4I | CCNGG | 1 cut(s) | 433 |
| StyI | CCWWGG | 2 cut(s) | 43, 203 |
| TaaI | ACNGT | 1 cut(s) | 345 |
| TaiI | ACGT | 2 cut(s) | 279, 334 |
| TaqI | TCGA | 1 cut(s) | 31 |
| TasI | AATT | 4 cut(s) | 71, 85, 104, 393 |
| TatI | WGTACW | 1 cut(s) | 165 |
| TauI | GCSGC | 1 cut(s) | 319 |
| TfiI | GAWTC | 1 cut(s) | 298 |
| Tru1I | TTAA | 2 cut(s) | 83, 392 |
| Tru9I | TTAA | 2 cut(s) | 83, 392 |
| TseI | GCWGC | 3 cut(s) | 319, 409, 443 |
| TspDTI | ATGAA | 2 cut(s) | 263, 477 |
| XapI | RAATTY | 1 cut(s) | 85 |
| XmaJI | CCTAGG | 2 cut(s) | 43, 203 |
| XmnI | GAANNNNTTC | 1 cut(s) | 10 |
| XspI | CTAG | 2 cut(s) | 44, 204 |
| ZraI | GACGTC | 1 cut(s) | 277 |