Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0019847

Physical Location & Seq

Genomic Coordinates Forward (+)

19245543 .. 19246721

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007633

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGAGAAGCTCTTCTTCCACTTTGCAACCTCGATCACTATGCCTAGGTCTGTTCTTTGATCCCTCATCCCAATTCTTTATATTAAATTTGTTATTGGATCTTGAATTATTTTGCTCTTACTCTCTCCTCTTATGCTTCACCACCGAGGCCCGACCGCCGGCGTTGTACTCCTGCTTGGGGCCTACTAAGGCCGGCGAGAAGCCGAGGGTGCTGCTGCTGGGGACGGGGTGGGCTGGGTGTCGGCTCATGAAGGGGTTGGACACGAAGCTATACGACGTCGTTTGCGTCTCGCCGAGGAATCACATGGTGTTCACGCCGCTGCTGGATCCACGTGTGTGGGGACTGTGGAGTTTAGGTTCTCTTCTCTTCTCCCCTGACATTTATTACTTGTTAATTATGCTTTCTTCGCTGCCCCTTACTCTCTTTTGGTCTCCTGGAGATGCAGCAGACGAATGGGAAGATGAAGAGAAGGCGAAGATGGAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005777 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031304 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0098573 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

163

Amino Acids

18.24

Weight (kDa)

5.12

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0349501
rosa_laevigata	RLG00000007633 RLG00000011763 RLG00000026658 RLG00000027828
rosa_multiflora	Rmu_sc0000611.1_g000013 Rmu_sc0003311.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AciI	CCGC	2 cut(s)	155, 317
AclWI	GGATC	4 cut(s)	53, 105, 320, 333
AcsI	RAATTY	1 cut(s)	85
AcvI	CACGTG	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	307
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	157, 177
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	433
AleI	CACNNNNGTG	1 cut(s)	334
AloI	GAACNNNNNNTCC	2 cut(s)	340, 372
AluBI	AGCT	2 cut(s)	9, 268
AluI	AGCT	2 cut(s)	9, 268
Alw26I	GTCTC	2 cut(s)	292, 435
AlwI	GGATC	4 cut(s)	53, 105, 320, 333
AoxI	GGCC	3 cut(s)	147, 179, 189
ApeKI	GCWGC	5 cut(s)	211, 214, 319, 409, 443
ApoI	RAATTY	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	10
AspA2I	CCTAGG	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	148, 179
AsuHPI	GGTGA	1 cut(s)	130
AvrII	CCTAGG	1 cut(s)	43
BamHI	GGATCC	1 cut(s)	325
BbrPI	CACGTG	1 cut(s)	332
BbvI	GCAGC	5 cut(s)	198, 201, 306, 396, 455
BccI	CCATC	1 cut(s)	472
BcgI	CGANNNNNNTGC	4 cut(s)	21, 55, 193, 227
BciT130I	CCWGG	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	292, 435
BfaI	CTAG	1 cut(s)	44
BisI	GCNGC	6 cut(s)	212, 215, 317, 320, 410, 444
BlnI	CCTAGG	1 cut(s)	43
BlsI	GCNGC	6 cut(s)	213, 216, 318, 321, 411, 445
Bme1390I	CCNGG	1 cut(s)	435
BmgT120I	GGNCC	2 cut(s)	148, 179
BmiI	GGNNCC	2 cut(s)	180, 327
BmrFI	CCNGG	1 cut(s)	435
BmsI	GCATC	1 cut(s)	430
BpmI	CTGGAG	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	332
BsaHI	GRCGYC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	435
BsaJI	CCNNGG	4 cut(s)	43, 144, 203, 293
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 177
Bse118I	RCCGGY	2 cut(s)	157, 191
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	4 cut(s)	43, 144, 203, 293
BseGI	GGATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	157, 177
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	5 cut(s)	198, 201, 306, 396, 455
BseYI	CCCAGC	2 cut(s)	217, 233
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	149, 181, 191
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	2 cut(s)	158, 192
BslFI	GGGAC	2 cut(s)	235, 354
BslI	CCNNNNNNNGG	2 cut(s)	157, 177
BsmAI	GTCTC	2 cut(s)	292, 435
BsmBI	CGTCTC	1 cut(s)	292
BsmFI	GGGAC	2 cut(s)	235, 354
BsnI	GGCC	3 cut(s)	149, 181, 191
Bso31I	GGTCTC	1 cut(s)	435
Bsp143I	GATC	4 cut(s)	32, 58, 97, 325
BspACI	CCGC	2 cut(s)	155, 317
BspANI	GGCC	3 cut(s)	149, 181, 191
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	2 cut(s)	180, 327
BspPI	GGATC	4 cut(s)	53, 105, 320, 333
BspQI	GCTCTTC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	435
BsrFI	RCCGGY	2 cut(s)	157, 191
BssAI	RCCGGY	2 cut(s)	157, 191
BssECI	CCNNGG	4 cut(s)	43, 144, 203, 293
BssMI	GATC	4 cut(s)	32, 58, 97, 325
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	4 cut(s)	16, 366, 371, 459
BstACI	GRCGYC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	159, 193
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	65
BstKTI	GATC	4 cut(s)	35, 61, 100, 328
BstMAI	GTCTC	2 cut(s)	292, 435
BstMBI	GATC	4 cut(s)	32, 58, 97, 325
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 406
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	433
BstV1I	GCAGC	5 cut(s)	198, 201, 306, 396, 455
BstX2I	RGATCY	2 cut(s)	97, 325
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstYI	RGATCY	2 cut(s)	97, 325
BsuRI	GGCC	3 cut(s)	149, 181, 191
BtsCI	GGATG	1 cut(s)	65
Cac8I	GCNNGC	2 cut(s)	159, 193
CciI	TCATGA	1 cut(s)	246
Cfr10I	RCCGGY	2 cut(s)	157, 191
Cfr13I	GGNCC	2 cut(s)	148, 179
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	2 cut(s)	247, 304
CviJI	RGCY	8 cut(s)	9, 149, 181, 191, 202, 233, 244, 268
CviKI_1	RGCY	8 cut(s)	9, 149, 181, 191, 202, 233, 244, 268
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	4 cut(s)	34, 60, 99, 327
DpnII	GATC	4 cut(s)	32, 58, 97, 325
DraIII	CACNNNGTG	1 cut(s)	307
Eam1104I	CTCTTC	4 cut(s)	16, 366, 371, 459
EarI	CTCTTC	4 cut(s)	16, 366, 371, 459
Eco130I	CCWWGG	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	435
Eco72I	CACGTG	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	433
EcoT14I	CCWWGG	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	43
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	2 cut(s)	250, 307
FaiI	YATR	7 cut(s)	40, 80, 133, 248, 271, 305, 398
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	2 cut(s)	235, 354
FatI	CATG	2 cut(s)	246, 303
Fnu4HI	GCNGC	6 cut(s)	212, 215, 317, 320, 410, 444
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	6 cut(s)	212, 215, 317, 320, 410, 444
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	6 cut(s)	212, 215, 317, 320, 410, 444
GsaI	CCCAGC	2 cut(s)	221, 237
GsuI	CTGGAG	1 cut(s)	456
HaeIII	GGCC	3 cut(s)	149, 181, 191
HapII	CCGG	2 cut(s)	158, 192
HgaI	GACGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	250, 307
HinfI	GANTC	1 cut(s)	298
HpaII	CCGG	2 cut(s)	158, 192
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188III	TCNNGA	2 cut(s)	101, 247
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	2 cut(s)	278, 281
HpyAV	CCTTC	2 cut(s)	244, 463
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	2 cut(s)	276, 331
HpyCH4V	TGCA	2 cut(s)	25, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 406
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	2 cut(s)	276, 331
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	250, 307
KroI	GCCGGC	2 cut(s)	157, 191
KroNI	GCCGGC	2 cut(s)	159, 193
Kzo9I	GATC	4 cut(s)	32, 58, 97, 325
LguI	GCTCTTC	1 cut(s)	16
LpnPI	CCDG	9 cut(s)	171, 184, 203, 205, 219, 308, 387, 420, 447
Lsp1109I	GCAGC	5 cut(s)	198, 201, 306, 396, 455
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	2 cut(s)	276, 331
MalI	GATC	4 cut(s)	34, 60, 99, 327
MboI	GATC	4 cut(s)	32, 58, 97, 325
MboII	GAAGA	8 cut(s)	3, 6, 353, 358, 396, 470, 476, 487
MflI	RGATCY	2 cut(s)	97, 325
MluCI	AATT	4 cut(s)	71, 85, 104, 393
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	6 cut(s)	39, 73, 137, 139, 198, 288
MreI	CGCCGGCG	1 cut(s)	157
MroNI	GCCGGC	2 cut(s)	157, 191
MroXI	GAANNNNTTC	1 cut(s)	10
MseI	TTAA	2 cut(s)	83, 392
MslI	CAYNNNNRTG	1 cut(s)	334
MspA1I	CMGCKG	1 cut(s)	319
MspI	CCGG	2 cut(s)	158, 192
MspR9I	CCNGG	1 cut(s)	435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	2 cut(s)	208, 406
NaeI	GCCGGC	2 cut(s)	159, 193
NdeII	GATC	4 cut(s)	32, 58, 97, 325
NgoMIV	GCCGGC	2 cut(s)	157, 191
NlaIII	CATG	2 cut(s)	250, 307
NlaIV	GGNNCC	2 cut(s)	180, 327
NmeAIII	GCCGAG	2 cut(s)	228, 318
OliI	CACNNNNGTG	1 cut(s)	334
PagI	TCATGA	1 cut(s)	246
PciSI	GCTCTTC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdiI	GCCGGC	2 cut(s)	159, 193
PdmI	GAANNNNTTC	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	298
PfoI	TCCNGGA	1 cut(s)	433
PkrI	GCNGC	6 cut(s)	213, 216, 318, 321, 411, 445
PmaCI	CACGTG	1 cut(s)	332
PmlI	CACGTG	1 cut(s)	332
Ppu21I	YACGTR	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	433
PspCI	CACGTG	1 cut(s)	332
PspFI	CCCAGC	2 cut(s)	217, 233
PspGI	CCWGG	1 cut(s)	433
PspN4I	GGNNCC	2 cut(s)	180, 327
PspPI	GGNCC	2 cut(s)	148, 179
PsuI	RGATCY	2 cut(s)	97, 325
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	16
SaqAI	TTAA	2 cut(s)	83, 392
SatI	GCNGC	6 cut(s)	212, 215, 317, 320, 410, 444
Sau3AI	GATC	4 cut(s)	32, 58, 97, 325
Sau96I	GGNCC	2 cut(s)	148, 179
ScrFI	CCNGG	1 cut(s)	435
SetI	ASST	7 cut(s)	11, 31, 49, 270, 279, 334, 358
SfaNI	GCATC	1 cut(s)	430
SgrAI	CRCCGGYG	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	334
Sse9I	AATT	4 cut(s)	71, 85, 104, 393
SsiI	CCGC	2 cut(s)	155, 317
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	433
StyI	CCWWGG	1 cut(s)	43
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	2 cut(s)	279, 334
TaqI	TCGA	1 cut(s)	31
TasI	AATT	4 cut(s)	71, 85, 104, 393
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	319
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	2 cut(s)	83, 392
Tru9I	TTAA	2 cut(s)	83, 392
TseI	GCWGC	5 cut(s)	211, 214, 319, 409, 443
TspDTI	ATGAA	2 cut(s)	263, 477
XapI	RAATTY	1 cut(s)	85
XmaJI	CCTAGG	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	1 cut(s)	44
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.