Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003311.1

Orthogroup ID

OG0019847

Physical Location & Seq

Genomic Coordinates Reverse (-)

13628 .. 13978

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003311.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ctgttctttgatcccttatcccaattctttatattcaagttgttattggatcttgaattattttgctcttactctctcctcttatgcttcaccaccgaggcccgaccgccggcgttgtactccagcttggggcctactaaggccggcgagaagccgggagcgctggtgctggggacggggtgggctgggtgtcggctcatgaaggggttggacacgaagctatacgacgtcgtttgcgtctcgccgaggaatcacatggtgttcacgccgctgctggatccacgtgtgcggggactgtggagtttaggtcggtggcagagccaactgggaggatccaacctgccattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005777 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031304 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0098573 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

116

Amino Acids

12.91

Weight (kDa)

8.81

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0349501
rosa_laevigata	RLG00000007633 RLG00000011763 RLG00000026658 RLG00000027828
rosa_multiflora	Rmu_sc0000611.1_g000013 Rmu_sc0003311.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	231
AciI	CCGC	3 cut(s)	107, 269, 289
AclWI	GGATC	6 cut(s)	5, 57, 272, 285, 327, 340
AcvI	CACGTG	1 cut(s)	284
AcyI	GRCGYC	1 cut(s)	228
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	1 cut(s)	119
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	2 cut(s)	109, 129
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	37, 56
AluBI	AGCT	2 cut(s)	126, 220
AluI	AGCT	2 cut(s)	126, 220
Alw26I	GTCTC	1 cut(s)	244
AlwI	GGATC	6 cut(s)	5, 57, 272, 285, 327, 340
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	3 cut(s)	99, 131, 141
ApeKI	GCWGC	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	2 cut(s)	100, 131
AsuC2I	CCSGG	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	82
BamHI	GGATCC	2 cut(s)	277, 332
BbrPI	CACGTG	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	258
BcnI	CCSGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	244
BfoI	RGCGCY	1 cut(s)	164
BisI	GCNGC	2 cut(s)	269, 272
BlsI	GCNGC	2 cut(s)	270, 273
Bme1390I	CCNGG	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	100, 131
BmiI	GGNNCC	3 cut(s)	132, 279, 334
BmrFI	CCNGG	1 cut(s)	156
BmrI	ACTGGG	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	335
BpmI	CTGGAG	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	156
BsaAI	YACGTR	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	96, 245
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 180, 292, 322
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 129
Bse118I	RCCGGY	2 cut(s)	109, 143
Bse1I	ACTGG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	96, 245
BseLI	CCNNNNNNNGG	2 cut(s)	109, 129
BseNI	ACTGG	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	258
BseYI	CCCAGC	2 cut(s)	169, 185
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	3 cut(s)	101, 133, 143
BsiEI	CGRYCG	1 cut(s)	107
BsiSI	CCGG	3 cut(s)	110, 144, 155
BslFI	GGGAC	2 cut(s)	187, 306
BslI	CCNNNNNNNGG	2 cut(s)	109, 129
BsmAI	GTCTC	1 cut(s)	244
BsmBI	CGTCTC	1 cut(s)	244
BsmFI	GGGAC	2 cut(s)	187, 306
BsnI	GGCC	3 cut(s)	101, 133, 143
Bsp143I	GATC	4 cut(s)	10, 49, 277, 332
BspACI	CCGC	3 cut(s)	107, 269, 289
BspANI	GGCC	3 cut(s)	101, 133, 143
BspHI	TCATGA	1 cut(s)	198
BspLI	GGNNCC	3 cut(s)	132, 279, 334
BspPI	GGATC	6 cut(s)	5, 57, 272, 285, 327, 340
BsrFI	RCCGGY	2 cut(s)	109, 143
BsrI	ACTGG	1 cut(s)	330
BssAI	RCCGGY	2 cut(s)	109, 143
BssECI	CCNNGG	2 cut(s)	96, 245
BssMI	GATC	4 cut(s)	10, 49, 277, 332
BssNI	GRCGYC	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	111, 145
BstDEI	CTNAG	1 cut(s)	138
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	4 cut(s)	13, 52, 280, 335
BstMAI	GTCTC	1 cut(s)	244
BstMBI	GATC	4 cut(s)	10, 49, 277, 332
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	258
BstX2I	RGATCY	3 cut(s)	49, 277, 332
BstYI	RGATCY	3 cut(s)	49, 277, 332
BsuRI	GGCC	3 cut(s)	101, 133, 143
Cac8I	GCNNGC	2 cut(s)	111, 145
CciI	TCATGA	1 cut(s)	198
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	2 cut(s)	109, 143
Cfr13I	GGNCC	2 cut(s)	100, 131
CseI	GACGC	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	2 cut(s)	199, 256
CviJI	RGCY	9 cut(s)	101, 126, 133, 143, 154, 185, 196, 220, 321
CviKI_1	RGCY	9 cut(s)	101, 126, 133, 143, 154, 185, 196, 220, 321
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	4 cut(s)	12, 51, 279, 334
DpnII	GATC	4 cut(s)	10, 49, 277, 332
DraIII	CACNNNGTG	1 cut(s)	259
Eco47III	AGCGCT	1 cut(s)	162
Eco72I	CACGTG	1 cut(s)	284
EcoO109I	RGGNCCY	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	244
FaeI	CATG	2 cut(s)	202, 259
FaiI	YATR	5 cut(s)	32, 85, 200, 223, 257
FaqI	GGGAC	2 cut(s)	187, 306
FatI	CATG	2 cut(s)	198, 255
FauI	CCCGC	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	269, 272
Fsp4HI	GCNGC	2 cut(s)	269, 272
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	2 cut(s)	269, 272
GsaI	CCCAGC	2 cut(s)	173, 189
GsuI	CTGGAG	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	3 cut(s)	101, 133, 143
HapII	CCGG	3 cut(s)	110, 144, 155
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	2 cut(s)	202, 259
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	250
HpaII	CCGG	3 cut(s)	110, 144, 155
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188III	TCNNGA	2 cut(s)	53, 199
Hpy8I	GTNNAC	1 cut(s)	264
Hpy99I	CGWCG	2 cut(s)	230, 233
HpyAV	CCTTC	1 cut(s)	196
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4IV	ACGT	2 cut(s)	228, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	160
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	2 cut(s)	228, 283
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	202, 259
HspAI	GCGC	1 cut(s)	161
KroI	GCCGGC	2 cut(s)	109, 143
KroNI	GCCGGC	2 cut(s)	111, 145
Kzo9I	GATC	4 cut(s)	10, 49, 277, 332
LmnI	GCTCC	1 cut(s)	158
LpnPI	CCDG	9 cut(s)	123, 136, 149, 155, 157, 168, 171, 260, 311
Lsp1109I	GCAGC	1 cut(s)	258
MaeII	ACGT	2 cut(s)	228, 283
MalI	GATC	4 cut(s)	12, 51, 279, 334
MboI	GATC	4 cut(s)	10, 49, 277, 332
MflI	RGATCY	3 cut(s)	49, 277, 332
MluCI	AATT	2 cut(s)	23, 56
MmeI	TCCRAC	1 cut(s)	189
MnlI	CCTC	4 cut(s)	89, 91, 240, 323
MreI	CGCCGGCG	1 cut(s)	109
MroNI	GCCGGC	2 cut(s)	109, 143
MspA1I	CMGCKG	1 cut(s)	271
MspI	CCGG	3 cut(s)	110, 144, 155
MspR9I	CCNGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	160
NaeI	GCCGGC	2 cut(s)	111, 145
NciI	CCSGG	1 cut(s)	156
NdeII	GATC	4 cut(s)	10, 49, 277, 332
NgoMIV	GCCGGC	2 cut(s)	109, 143
NlaIII	CATG	2 cut(s)	202, 259
NlaIV	GGNNCC	3 cut(s)	132, 279, 334
NmeAIII	GCCGAG	1 cut(s)	270
PagI	TCATGA	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PdiI	GCCGGC	2 cut(s)	111, 145
PfeI	GAWTC	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	270, 273
PmaCI	CACGTG	1 cut(s)	284
PmlI	CACGTG	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	284
PspCI	CACGTG	1 cut(s)	284
PspFI	CCCAGC	2 cut(s)	169, 185
PspN4I	GGNNCC	3 cut(s)	132, 279, 334
PspPI	GGNCC	2 cut(s)	100, 131
PsuI	RGATCY	3 cut(s)	49, 277, 332
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SatI	GCNGC	2 cut(s)	269, 272
Sau3AI	GATC	4 cut(s)	10, 49, 277, 332
Sau96I	GGNCC	2 cut(s)	100, 131
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	6 cut(s)	128, 222, 231, 286, 310, 342
SgrAI	CRCCGGYG	1 cut(s)	109
Sse9I	AATT	2 cut(s)	23, 56
SsiI	CCGC	3 cut(s)	107, 269, 289
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	297
TaiI	ACGT	2 cut(s)	231, 286
TasI	AATT	2 cut(s)	23, 56
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	215
ZraI	GACGTC	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.