Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0019847

Physical Location & Seq

Genomic Coordinates Forward (+)

12433320 .. 12433909

Gene Structure 590 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011763

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGAGAAGCTCTTCTTCCACTTTGCAACCTCGATCACTATGCCTAGGTCTGTTCTTTGATCCCTTATCCCAATTCTTTATATTCAATTTGTTATTGGATCTTGAATTATTTTGCTCTTACTCTCTCCTCTTATGCTTCACCACCAAGGCCCGACCGCTGGCGTTGTACTCCTGCTTGGGGCCTACTAAGGCCGGCGAGAAGCCGAGGGTGCTGGTGCTGGGGACGGGGTGGGCTGGGTGTCGGCTCATGAAGGGGTTGGACACGAAGCTATACGACGTCGTTTGCGTCTCGCTGAGAAATCACATGGTGTTCACGCCGCTGCTGGATCCACGTGTGTGGGGACTGTGGAGTTTAGGTCGGTGGCAGAGCCAACTGGGAGGATCCAACCTGCCATTTCGAGGGAGCCCCAGGGTCGTATTTCTTTCTGTCCAATTGTACTGGGCTCGATACGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005759 GO:0005777 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0031090 GO:0031224 GO:0031300 GO:0031304 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0050896 GO:0051716 GO:0055114 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0098573 GO:0104004

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pyr_redox_2

Protein Analysis

152

Amino Acids

17.05

Weight (kDa)

9.64

Isoelectric Point (pI)

38.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019847)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0349501
rosa_laevigata	RLG00000007633 RLG00000011763 RLG00000026658 RLG00000027828
rosa_multiflora	Rmu_sc0000611.1_g000013 Rmu_sc0003311.1_g000004

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
Acc36I	ACCTGC	1 cut(s)	396
AciI	CCGC	2 cut(s)	155, 317
AclWI	GGATC	6 cut(s)	53, 105, 320, 333, 375, 388
AcvI	CACGTG	1 cut(s)	332
AcyI	GRCGYC	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	307
AfaI	GTAC	2 cut(s)	167, 437
AfiI	CCNNNNNNNGG	3 cut(s)	157, 177, 398
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	85, 104
AjnI	CCWGG	1 cut(s)	407
AleI	CACNNNNGTG	1 cut(s)	334
AluBI	AGCT	2 cut(s)	9, 268
AluI	AGCT	2 cut(s)	9, 268
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	6 cut(s)	53, 105, 320, 333, 375, 388
AoxI	GGCC	3 cut(s)	147, 179, 189
ApeKI	GCWGC	1 cut(s)	319
Asp700I	GAANNNNTTC	1 cut(s)	10
AspA2I	CCTAGG	1 cut(s)	43
AspS9I	GGNCC	2 cut(s)	148, 179
AsuHPI	GGTGA	1 cut(s)	130
AvrII	CCTAGG	1 cut(s)	43
BamHI	GGATCC	2 cut(s)	325, 380
BanII	GRGCYC	2 cut(s)	407, 445
BbrPI	CACGTG	1 cut(s)	332
BbvI	GCAGC	1 cut(s)	306
BcgI	CGANNNNNNTGC	2 cut(s)	21, 55
BciT130I	CCWGG	1 cut(s)	409
BcoDI	GTCTC	1 cut(s)	292
BfaI	CTAG	1 cut(s)	44
BfuAI	ACCTGC	1 cut(s)	396
BisI	GCNGC	2 cut(s)	317, 320
BlnI	CCTAGG	1 cut(s)	43
BlsI	GCNGC	2 cut(s)	318, 321
Bme1390I	CCNGG	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	148, 179
BmiI	GGNNCC	4 cut(s)	180, 327, 382, 404
BmrFI	CCNGG	1 cut(s)	409
BmrI	ACTGGG	2 cut(s)	383, 448
BmuI	ACTGGG	2 cut(s)	383, 448
BsaAI	YACGTR	1 cut(s)	332
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	5 cut(s)	43, 144, 203, 407, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	340, 370
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 177, 398
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	378, 443
BseBI	CCWGG	1 cut(s)	409
BseDI	CCNNGG	5 cut(s)	43, 144, 203, 407, 408
BseLI	CCNNNNNNNGG	3 cut(s)	157, 177, 398
BseMII	CTCAG	1 cut(s)	284
BseNI	ACTGG	2 cut(s)	378, 443
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	1 cut(s)	306
BseYI	CCCAGC	2 cut(s)	217, 233
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	149, 181, 191
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	2 cut(s)	235, 354
BslI	CCNNNNNNNGG	3 cut(s)	157, 177, 398
BsmAI	GTCTC	1 cut(s)	292
BsmBI	CGTCTC	1 cut(s)	292
BsmFI	GGGAC	2 cut(s)	235, 354
BsnI	GGCC	3 cut(s)	149, 181, 191
Bsp1286I	GDGCHC	2 cut(s)	407, 445
Bsp143I	GATC	5 cut(s)	32, 58, 97, 325, 380
BspACI	CCGC	2 cut(s)	155, 317
BspANI	GGCC	3 cut(s)	149, 181, 191
BspCNI	CTCAG	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	246
BspLI	GGNNCC	4 cut(s)	180, 327, 382, 404
BspMI	ACCTGC	1 cut(s)	396
BspPI	GGATC	6 cut(s)	53, 105, 320, 333, 375, 388
BspQI	GCTCTTC	1 cut(s)	16
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	378, 443
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	5 cut(s)	43, 144, 203, 407, 408
BssMI	GATC	5 cut(s)	32, 58, 97, 325, 380
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	2 cut(s)	43, 144
Bst2UI	CCWGG	1 cut(s)	409
Bst4CI	ACNGT	1 cut(s)	345
Bst6I	CTCTTC	1 cut(s)	16
BstACI	GRCGYC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	332
BstC8I	GCNNGC	2 cut(s)	159, 193
BstDEI	CTNAG	2 cut(s)	186, 293
BstKTI	GATC	5 cut(s)	35, 61, 100, 328, 383
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	5 cut(s)	32, 58, 97, 325, 380
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstNI	CCWGG	1 cut(s)	409
BstSCI	CCNGG	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	306
BstX2I	RGATCY	3 cut(s)	97, 325, 380
BstXI	CCANNNNNNTGG	1 cut(s)	336
BstYI	RGATCY	3 cut(s)	97, 325, 380
BsuRI	GGCC	3 cut(s)	149, 181, 191
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	159, 193
CciI	TCATGA	1 cut(s)	246
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	148, 179
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	166, 436
CviAII	CATG	2 cut(s)	247, 304
CviQI	GTAC	2 cut(s)	166, 436
DdeI	CTNAG	2 cut(s)	186, 293
DpnI	GATC	5 cut(s)	34, 60, 99, 327, 382
DpnII	GATC	5 cut(s)	32, 58, 97, 325, 380
DraIII	CACNNNGTG	1 cut(s)	307
Eam1104I	CTCTTC	1 cut(s)	16
EarI	CTCTTC	1 cut(s)	16
Eco130I	CCWWGG	2 cut(s)	43, 144
Eco24I	GRGCYC	2 cut(s)	407, 445
Eco72I	CACGTG	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	407
EcoT14I	CCWWGG	2 cut(s)	43, 144
EcoT38I	GRGCYC	2 cut(s)	407, 445
ErhI	CCWWGG	2 cut(s)	43, 144
Esp3I	CGTCTC	1 cut(s)	292
FaeI	CATG	2 cut(s)	250, 307
FaiI	YATR	6 cut(s)	40, 80, 133, 248, 271, 305
FalI	AAGNNNNNCTT	1 cut(s)	30
FaqI	GGGAC	2 cut(s)	235, 354
FatI	CATG	2 cut(s)	246, 303
Fnu4HI	GCNGC	2 cut(s)	317, 320
FriOI	GRGCYC	2 cut(s)	407, 445
Fsp4HI	GCNGC	2 cut(s)	317, 320
FspBI	CTAG	1 cut(s)	44
GluI	GCNGC	2 cut(s)	317, 320
GsaI	CCCAGC	2 cut(s)	221, 237
HaeIII	GGCC	3 cut(s)	149, 181, 191
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	274
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	250, 307
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188III	TCNNGA	2 cut(s)	101, 247
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	2 cut(s)	278, 281
HpyAV	CCTTC	1 cut(s)	244
HpyCH4III	ACNGT	1 cut(s)	345
HpyCH4IV	ACGT	2 cut(s)	276, 331
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	2 cut(s)	186, 293
HpySE526I	ACGT	2 cut(s)	276, 331
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	250, 307
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	32, 58, 97, 325, 380
LguI	GCTCTTC	1 cut(s)	16
LmnI	GCTCC	1 cut(s)	402
Lsp1109I	GCAGC	1 cut(s)	306
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	2 cut(s)	276, 331
MalI	GATC	5 cut(s)	34, 60, 99, 327, 382
MboI	GATC	5 cut(s)	32, 58, 97, 325, 380
MboII	GAAGA	2 cut(s)	3, 6
MfeI	CAATTG	1 cut(s)	431
MflI	RGATCY	3 cut(s)	97, 325, 380
MhlI	GDGCHC	2 cut(s)	407, 445
MluCI	AATT	4 cut(s)	71, 85, 104, 431
MmeI	TCCRAC	2 cut(s)	237, 408
MnlI	CCTC	5 cut(s)	39, 137, 198, 371, 392
MroNI	GCCGGC	1 cut(s)	191
MroXI	GAANNNNTTC	1 cut(s)	10
MslI	CAYNNNNRTG	1 cut(s)	334
MspA1I	CMGCKG	2 cut(s)	157, 319
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	409
MunI	CAATTG	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	208
NaeI	GCCGGC	1 cut(s)	193
NdeII	GATC	5 cut(s)	32, 58, 97, 325, 380
NgoMIV	GCCGGC	1 cut(s)	191
NlaIII	CATG	2 cut(s)	250, 307
NlaIV	GGNNCC	4 cut(s)	180, 327, 382, 404
NmeAIII	GCCGAG	1 cut(s)	228
OliI	CACNNNNGTG	1 cut(s)	334
PagI	TCATGA	1 cut(s)	246
PasI	CCCWGGG	1 cut(s)	408
PciSI	GCTCTTC	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PdiI	GCCGGC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	318, 321
PmaCI	CACGTG	1 cut(s)	332
PmlI	CACGTG	1 cut(s)	332
Ppu21I	YACGTR	1 cut(s)	332
Psp6I	CCWGG	1 cut(s)	407
PspCI	CACGTG	1 cut(s)	332
PspFI	CCCAGC	2 cut(s)	217, 233
PspGI	CCWGG	1 cut(s)	407
PspN4I	GGNNCC	4 cut(s)	180, 327, 382, 404
PspPI	GGNCC	2 cut(s)	148, 179
PsuI	RGATCY	3 cut(s)	97, 325, 380
RsaI	GTAC	2 cut(s)	167, 437
RsaNI	GTAC	2 cut(s)	166, 436
RseI	CAYNNNNRTG	1 cut(s)	334
SapI	GCTCTTC	1 cut(s)	16
SatI	GCNGC	2 cut(s)	317, 320
Sau3AI	GATC	5 cut(s)	32, 58, 97, 325, 380
Sau96I	GGNCC	2 cut(s)	148, 179
ScrFI	CCNGG	1 cut(s)	409
SduI	GDGCHC	2 cut(s)	407, 445
SetI	ASST	8 cut(s)	11, 31, 49, 270, 279, 334, 358, 390
SmiMI	CAYNNNNRTG	1 cut(s)	334
Sse9I	AATT	4 cut(s)	71, 85, 104, 431
SsiI	CCGC	2 cut(s)	155, 317
SspMI	CTAG	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	407
StyI	CCWWGG	2 cut(s)	43, 144
TaaI	ACNGT	1 cut(s)	345
TaiI	ACGT	2 cut(s)	279, 334
TaqI	TCGA	3 cut(s)	31, 397, 445
TasI	AATT	4 cut(s)	71, 85, 104, 431
TatI	WGTACW	2 cut(s)	165, 435
TauI	GCSGC	1 cut(s)	319
TseI	GCWGC	1 cut(s)	319
TspDTI	ATGAA	1 cut(s)	263
XmaJI	CCTAGG	1 cut(s)	43
XmnI	GAANNNNTTC	1 cut(s)	10
XspI	CTAG	1 cut(s)	44
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.