RchiOBHm_Chr1g0354731

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
47585434 .. 47586096
663 bp
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UTR
Exon/CDS
Intron
PRQ58025

Sequence Viewer

Length: 333 bp
ATGTCCAATTTAAGACACCTAAAGCTCAACTCCAATGACTTCACCGGGAACAAAATTCCAGAGCTCATTGGTAATCTGACCATTTTAAGATATCTAGATCACTCTAATGCTGTCTTAGGTGGTGAAATTCCACATCATCAGCTTGGAAACCTTACCAGCAGTATCATAAACTCGCTATTACCACTTCTCTCAGGCTGTAGAAAAACCTCAATTGGCTCCCTCGCTTTCTTTAAATTATCTGGACCTGACTTGGGCCGATCTAAGACTTCTGATTGGCTGGAAACAATAGACAAGCTCTCTAATCTCAGAAACTTGACCTCAATGGGGATGTGA

Protein Analysis

110

Amino Acids

12.04

Weight (kDa)

9.36

Isoelectric Point (pI)

26.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020487)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 54, 126
AfiI CCNNNNNNNGG 2 cut(s) 251, 324
AluBI AGCT 4 cut(s) 25, 64, 142, 295
AluI AGCT 4 cut(s) 25, 64, 142, 295
Alw21I GWGCWC 1 cut(s) 66
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 2 cut(s) 54, 126
AspS9I GGNCC 2 cut(s) 242, 253
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 34, 134
AvaII GGWCC 1 cut(s) 242
BanII GRGCYC 1 cut(s) 66
Bbv12I GWGCWC 1 cut(s) 66
BcnI CCSGG 1 cut(s) 46
BfaI CTAG 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 46
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 2 cut(s) 242, 253
BmiI GGNNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 46
BpuMI CCSGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 324
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 2 cut(s) 251, 324
BseMII CTCAG 2 cut(s) 204, 319
BshFI GGCC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 251, 324
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 97, 257
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 2 cut(s) 203, 318
BspLI GGNNCC 1 cut(s) 217
BssMI GATC 2 cut(s) 97, 257
BstDEI CTNAG 4 cut(s) 115, 190, 261, 305
BstF5I GGATG 1 cut(s) 333
BstKTI GATC 2 cut(s) 100, 260
BstMBI GATC 2 cut(s) 97, 257
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 196
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 242, 253
CviJI RGCY 8 cut(s) 25, 64, 142, 195, 216, 255, 277, 295
CviKI_1 RGCY 8 cut(s) 25, 64, 142, 195, 216, 255, 277, 295
DdeI CTNAG 4 cut(s) 115, 190, 261, 305
DpnI GATC 2 cut(s) 99, 259
DpnII GATC 2 cut(s) 97, 257
DraI TTTAAA 1 cut(s) 232
Ecl136II GAGCTC 1 cut(s) 64
Eco24I GRGCYC 1 cut(s) 66
Eco32I GATATC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 64
EcoICRI GAGCTC 1 cut(s) 64
EcoRV GATATC 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 66
FaiI YATR 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 66
FspBI CTAG 1 cut(s) 95
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 45
HpaII CCGG 1 cut(s) 45
HphI GGTGA 2 cut(s) 34, 134
Hpy188I TCNGA 3 cut(s) 78, 271, 308
Hpy188III TCNNGA 3 cut(s) 59, 95, 240
HpyF3I CTNAG 4 cut(s) 115, 190, 261, 305
Kzo9I GATC 2 cut(s) 97, 257
LmnI GCTCC 1 cut(s) 221
LpnPI CCDG 7 cut(s) 58, 72, 169, 177, 225, 258, 263
MaeI CTAG 1 cut(s) 95
MalI GATC 2 cut(s) 99, 259
MboI GATC 2 cut(s) 97, 257
MfeI CAATTG 1 cut(s) 210
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 5 cut(s) 7, 54, 126, 210, 233
MnlI CCTC 3 cut(s) 217, 230, 328
MseI TTAA 3 cut(s) 11, 86, 231
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 46
MunI CAATTG 1 cut(s) 210
NciI CCSGG 1 cut(s) 46
NdeII GATC 2 cut(s) 97, 257
NlaIV GGNNCC 1 cut(s) 217
Psp124BI GAGCTC 1 cut(s) 66
PspN4I GGNNCC 1 cut(s) 217
PspPI GGNCC 2 cut(s) 242, 253
RseI CAYNNNNRTG 1 cut(s) 105
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 3 cut(s) 11, 86, 231
Sau3AI GATC 2 cut(s) 97, 257
Sau96I GGNCC 2 cut(s) 242, 253
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 1 cut(s) 66
SfcI CTRYAG 1 cut(s) 196
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 5 cut(s) 7, 54, 126, 210, 233
SspMI CTAG 1 cut(s) 95
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 1 cut(s) 44
TasI AATT 5 cut(s) 7, 54, 126, 210, 233
Tru1I TTAA 3 cut(s) 11, 86, 231
Tru9I TTAA 3 cut(s) 11, 86, 231
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 2 cut(s) 54, 126
XbaI TCTAGA 1 cut(s) 94
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.