Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0020487

Physical Location & Seq

Genomic Coordinates Reverse (-)

47133866 .. 47149375

Gene Structure 15510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG255300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGACAACATGAACTTTCAAGGTGATGAAACTCCATATCATCAGCTTGGAAACCTTACTCACTTGCAGTATCTCAATCTCGGGTATAATGACATCACTCATGGTGTAGAAAACCTCCATTGGCTCCCACATCTTTCATCATTAAAATACCTGGACCTGAGTTCTACCAATCTAATTAAGGTTTCTGATTGGCTGGAAACAATAAACAAGCTCCCCAATTTAAGAAATTTGACCTTGAGATTATGTAGTCTTCCTCCTCCAACTCTTTCCACTCTTTCTCACATAAATTCTTCCAATTCTCTTGTAAGTGTTGATTTGTCCAAAAATCCTGCTGCTGTACAAAAACCTCAATTGGCTCCCTCGTCTTTCTTTAAAATATCTGGACCTGACTTGGGCCGATCTAAGACTTCGGATTGGCTGGAAACAATAGACAAGCTCTCTAATCTAAGAAACTTGACCTCAATGGGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

157

Amino Acids

17.57

Weight (kDa)

6.57

Isoelectric Point (pI)

32.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_4	PF12799	20 - 61	2.7e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354731
rosa_samantha	Rh1AG255300 Rh1AG255400 Rh1AG255600 Rh1AG256200 Rh1AG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	226, 286
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	2 cut(s)	392, 465
AgsI	TTSAA	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	150
AluBI	AGCT	3 cut(s)	46, 211, 436
AluI	AGCT	3 cut(s)	46, 211, 436
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	332
ApoI	RAATTY	2 cut(s)	226, 286
AspS9I	GGNCC	3 cut(s)	154, 383, 394
AsuHPI	GGTGA	1 cut(s)	35
AvaI	CYCGRG	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	154, 383
BbsI	GAAGAC	1 cut(s)	242
BbvI	GCAGC	1 cut(s)	319
BciT130I	CCWGG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	333
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	152
Bme18I	GGWCC	2 cut(s)	154, 383
BmeT110I	CYCGRG	1 cut(s)	80
BmgT120I	GGNCC	3 cut(s)	154, 383, 394
BmiI	GGNNCC	2 cut(s)	125, 357
BmrFI	CCNGG	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	2 cut(s)	392, 465
BseBI	CCWGG	1 cut(s)	152
BseGI	GGATG	1 cut(s)	474
BseLI	CCNNNNNNNGG	2 cut(s)	392, 465
BseMII	CTCAG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	392, 465
BsnI	GGCC	1 cut(s)	396
BsoBI	CYCGRG	1 cut(s)	80
Bsp1407I	TGTACA	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	396
BspCNI	CTCAG	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	125, 357
BsrGI	TGTACA	1 cut(s)	337
BssMI	GATC	1 cut(s)	398
Bst2UI	CCWGG	1 cut(s)	152
BstAUI	TGTACA	1 cut(s)	337
BstDEI	CTNAG	3 cut(s)	158, 402, 446
BstF5I	GGATG	1 cut(s)	474
BstKTI	GATC	1 cut(s)	401
BstMBI	GATC	1 cut(s)	398
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	242
BsuRI	GGCC	1 cut(s)	396
BtsCI	GGATG	1 cut(s)	474
Cfr13I	GGNCC	3 cut(s)	154, 383, 394
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	2 cut(s)	10, 101
CviJI	RGCY	8 cut(s)	46, 124, 193, 211, 356, 396, 418, 436
CviKI_1	RGCY	8 cut(s)	46, 124, 193, 211, 356, 396, 418, 436
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	3 cut(s)	158, 402, 446
DpnI	GATC	1 cut(s)	400
DpnII	GATC	1 cut(s)	398
DraI	TTTAAA	1 cut(s)	373
Eco47I	GGWCC	2 cut(s)	154, 383
Eco88I	CYCGRG	1 cut(s)	80
EcoRII	CCWGG	1 cut(s)	150
FaeI	CATG	2 cut(s)	13, 104
FaiI	YATR	6 cut(s)	11, 37, 87, 102, 244, 284
FatI	CATG	2 cut(s)	9, 100
Fnu4HI	GCNGC	1 cut(s)	333
Fsp4HI	GCNGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	396
Hin1II	CATG	2 cut(s)	13, 104
HphI	GGTGA	1 cut(s)	35
Hpy188I	TCNGA	2 cut(s)	187, 412
Hpy188III	TCNNGA	1 cut(s)	381
HpyCH4V	TGCA	1 cut(s)	67
HpyF3I	CTNAG	3 cut(s)	158, 402, 446
Hsp92II	CATG	2 cut(s)	13, 104
Kzo9I	GATC	1 cut(s)	398
LmnI	GCTCC	3 cut(s)	129, 216, 361
LpnPI	CCDG	8 cut(s)	137, 164, 170, 179, 342, 366, 399, 404
Lsp1109I	GCAGC	1 cut(s)	319
MalI	GATC	1 cut(s)	400
MboI	GATC	1 cut(s)	398
MboII	GAAGA	2 cut(s)	242, 282
MfeI	CAATTG	1 cut(s)	350
MluCI	AATT	6 cut(s)	174, 217, 226, 286, 295, 350
MmeI	TCCRAC	1 cut(s)	284
MnlI	CCTC	6 cut(s)	125, 264, 267, 357, 370, 469
MseI	TTAA	4 cut(s)	143, 177, 221, 372
MspR9I	CCNGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	350
MvaI	CCWGG	1 cut(s)	152
NdeII	GATC	1 cut(s)	398
NlaIII	CATG	2 cut(s)	13, 104
NlaIV	GGNNCC	2 cut(s)	125, 357
PkrI	GCNGC	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	2 cut(s)	125, 357
PspPI	GGNCC	3 cut(s)	154, 383, 394
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SaqAI	TTAA	4 cut(s)	143, 177, 221, 372
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	1 cut(s)	398
Sau96I	GGNCC	3 cut(s)	154, 383, 394
ScrFI	CCNGG	1 cut(s)	152
SinI	GGWCC	2 cut(s)	154, 383
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	6 cut(s)	174, 217, 226, 286, 295, 350
StyD4I	CCNGG	1 cut(s)	150
TasI	AATT	6 cut(s)	174, 217, 226, 286, 295, 350
TatI	WGTACW	1 cut(s)	337
Tru1I	TTAA	4 cut(s)	143, 177, 221, 372
Tru9I	TTAA	4 cut(s)	143, 177, 221, 372
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	3 cut(s)	26, 42, 126
VpaK11BI	GGWCC	2 cut(s)	154, 383
XapI	RAATTY	2 cut(s)	226, 286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.