Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0020487

Physical Location & Seq

Genomic Coordinates Reverse (-)

47249460 .. 47254142

Gene Structure 4683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG256200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGGACCTAAGTTCGACCGATCTAAGTAAGGCTTCTGATTGGCTGGAAACAATAAACAAGCTTCCCAATTTAAGAAACTTGACCTTGAGCTTCTGTAGTCTTCCTCCTCCAACTCTTTCCACTCTTTCAAACATAAATTCTTCCAACTCTCTTGTTAGTGTTGATTTGTCTGGAAATCCTGTTGTCAGTTCTTCAATATTCAAATGGTTGTGCTATTCAAATACCACCCTTGTTCATCTTGACCTCTCTTTAAACCAATTAAGTGGTTTGATTCCAGATGTTTTCGCAAACATGAGCTCACTTGCATATCTTGACCTCTCTTTAAACCAATTAAGTGGTTTGATTCCCGATGCTTTTGCAAACATGAGCTCACTTGCATATCTTGACCTCTCTTTAAACCAATTAAGTGGTTTGATTCCCGATGCTTTCAGAAACATGGGCTCACTTGCATATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGTTTTCAGAAACATGGGCTCACTTGAACTTCTTGCCCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTCGCAAACATGAGCTCACTTGCATATCTTTACTTCTCTTTCAACCAATTAAGTGGTTTGATTCCCGATGTTTTCATAAACATGGGCTCACTTGAACATCTTGCCCTCTTTGAAAACCAATTAAGTGGTTTAATTCCGAATGCTTTCGCAAACATGAGTTCACTTGCATATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTGATGCTTTCGCAAACATGAGCTCACTTGCATATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGCTTTCGCAAACATGGGCTCACTTGAACATCTTGGCCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGTTTTCGCAAACATGAGCTCACTTGAACTTCTTGCCCTCTATTCCAACCAATTAGGTGGTTTGATTCCTGATGCTTTCAGAAACATGGGCTCACTTAAATTTCTATACCTCTCTTCCAACCAATTAAGTGCAGCAGTATTCCTTTTGGCTTCAAGCATAATTCCTTCAGTGCTGATTGTGCTGTATTCTCCAATCCGACAGCAGCCTGAAGATGAGATGCAATGTGCCATATTAGGGAAGTTACTTGAGCTTACCATGTTTCCAACATCAATGAATTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

403

Amino Acids

43.37

Weight (kDa)

4.12

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	51 - 111	1.6e-06	Leucine rich repeat
LRR_8	PF13855	76 - 135	2.5e-13	Leucine rich repeat
LRR_8	PF13855	104 - 159	1e-13	Leucine rich repeat
LRR_5	PF13306	117 - 245	6.4e-06	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	154 - 207	3.6e-11	Leucine rich repeat
LRR_8	PF13855	200 - 255	4.8e-11	Leucine rich repeat
LRR_5	PF13306	237 - 349	8.9e-07	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	247 - 303	5.8e-16	Leucine rich repeat
LRR_8	PF13855	296 - 351	6.1e-12	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354731
rosa_samantha	Rh1AG255300 Rh1AG255400 Rh1AG255600 Rh1AG256200 Rh1AG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	136, 1025
AcuI	CTGAAG	2 cut(s)	1077, 1155
AfiI	CCNNNNNNNGG	1 cut(s)	1161
AluBI	AGCT	8 cut(s)	61, 90, 297, 369, 585, 801, 945, 1177
AluI	AGCT	8 cut(s)	61, 90, 297, 369, 585, 801, 945, 1177
Alw21I	GWGCWC	5 cut(s)	299, 371, 587, 803, 947
AoxI	GGCC	1 cut(s)	889
ApeKI	GCWGC	2 cut(s)	1058, 1129
ApoI	RAATTY	2 cut(s)	136, 1025
Asp700I	GAANNNNTTC	1 cut(s)	713
AspS9I	GGNCC	1 cut(s)	4
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	5 cut(s)	299, 371, 587, 803, 947
BbvI	GCAGC	2 cut(s)	1070, 1141
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BfmI	CTRYAG	1 cut(s)	94
BisI	GCNGC	2 cut(s)	1059, 1130
BlsI	GCNGC	2 cut(s)	1060, 1131
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	7 cut(s)	340, 412, 556, 772, 844, 988, 1134
BpiI	GAAGAC	1 cut(s)	92
BpuEI	CTTGAG	2 cut(s)	106, 1193
Bsc4I	CCNNNNNNNGG	1 cut(s)	1161
Bse3DI	GCAATG	1 cut(s)	1154
BseLI	CCNNNNNNNGG	1 cut(s)	1161
BseMI	GCAATG	1 cut(s)	1154
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	1070, 1141
BsgI	GTGCAG	1 cut(s)	1077
Bsh1285I	CGRYCG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	891
BsiEI	CGRYCG	1 cut(s)	18
BsiHKAI	GWGCWC	5 cut(s)	299, 371, 587, 803, 947
BslI	CCNNNNNNNGG	1 cut(s)	1161
BsmI	GAATGC	1 cut(s)	715
BsnI	GGCC	1 cut(s)	891
Bsp143I	GATC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	891
BsrDI	GCAATG	1 cut(s)	1154
BssMI	GATC	1 cut(s)	19
Bst6I	CTCTTC	6 cut(s)	469, 541, 757, 829, 901, 1045
BstDEI	CTNAG	2 cut(s)	8, 23
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMCI	CGRYCG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	1 cut(s)	1105
BstSFI	CTRYAG	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	1070, 1141
BstV2I	GAAGAC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	891
BtsIMutI	CAGTG	1 cut(s)	1101
Cfr13I	GGNCC	1 cut(s)	4
DdeI	CTNAG	2 cut(s)	8, 23
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DraI	TTTAAA	3 cut(s)	252, 324, 396
Eam1104I	CTCTTC	6 cut(s)	469, 541, 757, 829, 901, 1045
EarI	CTCTTC	6 cut(s)	469, 541, 757, 829, 901, 1045
Ecl136II	GAGCTC	5 cut(s)	297, 369, 585, 801, 945
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	5 cut(s)	297, 369, 585, 801, 945
Eco57I	CTGAAG	2 cut(s)	1077, 1155
EcoICRI	GAGCTC	5 cut(s)	297, 369, 585, 801, 945
FalI	AAGNNNNNCTT	2 cut(s)	16, 48
Fnu4HI	GCNGC	2 cut(s)	1059, 1130
Fsp4HI	GCNGC	2 cut(s)	1059, 1130
GluI	GCNGC	2 cut(s)	1059, 1130
HaeIII	GGCC	1 cut(s)	891
HindIII	AAGCTT	1 cut(s)	59
Hpy166II	GTNNAC	1 cut(s)	731
Hpy188I	TCNGA	6 cut(s)	37, 431, 503, 708, 1007, 1124
Hpy8I	GTNNAC	1 cut(s)	731
HpyAV	CCTTC	1 cut(s)	1101
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1105
HpyF3I	CTNAG	2 cut(s)	8, 23
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	7 cut(s)	29, 156, 192, 288, 792, 1008, 1146
Lsp1109I	GCAGC	2 cut(s)	1070, 1141
LweI	GCATC	7 cut(s)	340, 412, 556, 772, 844, 988, 1134
MaeIII	GTNAC	1 cut(s)	1167
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MroXI	GAANNNNTTC	1 cut(s)	713
MslI	CAYNNNNRTG	1 cut(s)	650
Mva1269I	GAATGC	1 cut(s)	715
MwoI	GCNNNNNNNGC	1 cut(s)	1105
NdeII	GATC	1 cut(s)	19
PctI	GAATGC	1 cut(s)	715
PdmI	GAANNNNTTC	1 cut(s)	713
PkrI	GCNGC	2 cut(s)	1060, 1131
Psp124BI	GAGCTC	5 cut(s)	299, 371, 587, 803, 947
PspPI	GGNCC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	650
SacI	GAGCTC	5 cut(s)	299, 371, 587, 803, 947
SatI	GCNGC	2 cut(s)	1059, 1130
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	4
SfaNI	GCATC	7 cut(s)	340, 412, 556, 772, 844, 988, 1134
SfcI	CTRYAG	1 cut(s)	94
SinI	GGWCC	1 cut(s)	4
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	2 cut(s)	85, 1172
SmoI	CTYRAG	2 cut(s)	85, 1172
SspI	AATATT	1 cut(s)	198
SstI	GAGCTC	5 cut(s)	299, 371, 587, 803, 947
TaqI	TCGA	1 cut(s)	14
TaqII	GACCGA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	1101
TseI	GCWGC	2 cut(s)	1058, 1129
TspDTI	ATGAA	2 cut(s)	224, 634
TspRI	CASTG	1 cut(s)	1101
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	2 cut(s)	136, 1025
XmnI	GAANNNNTTC	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.