Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0020487

Physical Location & Seq

Genomic Coordinates Reverse (-)

47168931 .. 47181608

Gene Structure 12678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG255600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1542 bp

ATGATGATGTTTCCTGAATGGAATTTAGAAGAAATTCCTGAAGCCTACCCGCTATATTGTGTTGATTTGTCTGGAAATCCTGATGTCATTTCTTCAATATTCAAATGGTTGTGCAATTTCAATACCACCCTTGTTCATCTTGACCTCTCTTCCAACCAACTAAGTGGTTTGATTCCGGATGCTTTTGCAAACATGAGCTCACTTGCATATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGTTTTCATAAACATGGGCTCACTTAAACATCTATCCCTCTCTTCTAACCAATTTAGTGGTTTGATTCCGGATGCTTTTGCAAACATAGGCTCACTTGCATATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGATTCCCGATGTTTTCAGAAACATGGGCTCACTTGAACATCTATCCCTCTCTTCCAACCAATTTAGTGGTTTGATTAGGGATGCTTTTGCAAACATGGGCTCACTTGCATATCTTGACCTCTCTTCCAACCAATTCAGTGGTTTGATTCCCGATGTTTTCAGAAACATGGGCTCACTTGAACATCTATCCCTCTCTTCCAACCAATTAAGCGGTTTGATTCACGATGCTTTCGCAAATATGAGCTCACTTGAAAATCTTGACCTCTCTTCCAACCAATTAAGTGGTTTGACTCCCGATGTTTTCAGAAACATGGGCTCGCTTGAATATCTATCCCTCTCTTCCAACCAATTAAGTGGTTTGACTCCTAATGCTTTTGCAAACATGAGCTCGCTTGCATATCTCAGTCTCTCTTCCAACCAATTAAGTGGTTTGACTCCCGATGTTTTCAGAAACATGGGCTCGCTTGAATATCTATCCCTCTCTTCCAACCAATTAAGTGGTTTGACTCCTAATGCTTTTGTAAACATGAGCTCGCTTGCATATCTCAGTCTCTCTTCCAACCAATTAAGTGGTTTGAGTCCCAATTCTTTCGCAAACATGAGCTCGCTTGAATATCTATCCCTCTTTTCCAACCAATTAAGTGGTTTGACTCCTAATGCTTTTGCAAACATGAGCTCGCTTGCATATCTCAGTCTCTCTTCCAACCAATTAAGTGGTTTGAGTCTCAATTCTTTCGCAAACATGAGGTCACTTGCACGTCTTTACCTCTCTTCCAACCAATTAAGTGGTTTGACTCCCGATGTTTTCAGAAACATGGGCTCGCTTGAATATCTATCCCTTTCTTCCAACCAATTAAGTGGTTTGACTCCTAATGCTTTTGCAAACATGAGCTCCCTTGCATATCTCAGTCTCTCTTCCAACCAATTAAGTGGTTTGATTCCGAATGCTTTCGCAAACATGAGGTCACTTGCATATCTTAGTCTCTCTTCCAACCAATTAAGTGGTTTGATTCCTGATGCTTTCAGAAACATGAGCTCACTTGCAACTCTTGACCTCTCTTCCAACCAATTCAGTGGTTTGACTCCTAATGCTTTCAGAAACATGGGCTCGCTTGAATATCTATACCTCTCTTCCAACCAATTAAGTGAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

513

Amino Acids

55.24

Weight (kDa)

4.33

Isoelectric Point (pI)

27.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_8	PF13855	38 - 78	5.2e-09	Leucine rich repeat
LRR_8	PF13855	43 - 102	6.3e-15	Leucine rich repeat
LRR_5	PF13306	60 - 172	7.6e-06	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	67 - 126	3.9e-14	Leucine rich repeat
LRR_8	PF13855	92 - 150	4.6e-13	Leucine rich repeat
LRR_8	PF13855	115 - 174	2.7e-14	Leucine rich repeat
LRR_8	PF13855	143 - 198	4.8e-12	Leucine rich repeat
LRR_8	PF13855	163 - 222	7.3e-14	Leucine rich repeat
LRR_5	PF13306	180 - 307	4.1e-12	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	188 - 246	5e-14	Leucine rich repeat
LRR_8	PF13855	211 - 270	1.4e-16	Leucine rich repeat
LRR_8	PF13855	239 - 294	1e-14	Leucine rich repeat
LRR_8	PF13855	263 - 318	3.1e-15	Leucine rich repeat
LRR_5	PF13306	276 - 398	3e-10	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	284 - 342	2.5e-15	Leucine rich repeat
LRR_8	PF13855	339 - 390	7.8e-12	Leucine rich repeat
LRR_8	PF13855	355 - 414	2.6e-13	Leucine rich repeat
LRR_8	PF13855	378 - 438	7.8e-17	Leucine rich repeat
LRR_5	PF13306	396 - 508	4.8e-10	BspA type Leucine rich repeat region (6 copies)
LRR_8	PF13855	414 - 462	1e-11	Leucine rich repeat
LRR_8	PF13855	450 - 510	3.1e-16	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020487)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354731
rosa_samantha	Rh1AG255300 Rh1AG255400 Rh1AG255600 Rh1AG256200 Rh1AG256500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	175, 319
AciI	CCGC	2 cut(s)	50, 597
AcsI	RAATTY	2 cut(s)	22, 33
AcuI	CTGAAG	1 cut(s)	60
AjiI	CACGTC	1 cut(s)	1145
AluBI	AGCT	8 cut(s)	198, 630, 774, 918, 990, 1062, 1278, 1422
AluI	AGCT	8 cut(s)	198, 630, 774, 918, 990, 1062, 1278, 1422
Alw21I	GWGCWC	8 cut(s)	200, 632, 776, 920, 992, 1064, 1280, 1424
Alw26I	GTCTC	6 cut(s)	797, 941, 1085, 1115, 1301, 1373
Aor13HI	TCCGGA	2 cut(s)	175, 319
ApoI	RAATTY	2 cut(s)	22, 33
ArsI	GACNNNNNNTTYG	4 cut(s)	1118, 1150, 1334, 1366
Asp700I	GAANNNNTTC	2 cut(s)	33, 1334
Bbv12I	GWGCWC	8 cut(s)	200, 632, 776, 920, 992, 1064, 1280, 1424
BcoDI	GTCTC	6 cut(s)	797, 941, 1085, 1115, 1301, 1373
BmgBI	CACGTC	1 cut(s)	1145
BmsI	GCATC	5 cut(s)	169, 313, 457, 601, 1393
BsaWI	WCCGGW	2 cut(s)	175, 319
BsaXI	ACNNNNNCTCC	2 cut(s)	1262, 1292
BseAI	TCCGGA	2 cut(s)	175, 319
BseGI	GGATG	3 cut(s)	184, 328, 472
BseMII	CTCAG	4 cut(s)	802, 946, 1090, 1306
BsiHKAI	GWGCWC	8 cut(s)	200, 632, 776, 920, 992, 1064, 1280, 1424
BsiSI	CCGG	2 cut(s)	176, 320
BslFI	GGGAC	1 cut(s)	951
BsmAI	GTCTC	6 cut(s)	797, 941, 1085, 1115, 1301, 1373
BsmFI	GGGAC	1 cut(s)	951
BsmI	GAATGC	1 cut(s)	1336
Bsp13I	TCCGGA	2 cut(s)	175, 319
BspACI	CCGC	2 cut(s)	50, 597
BspCNI	CTCAG	4 cut(s)	801, 945, 1089, 1305
BspEI	TCCGGA	2 cut(s)	175, 319
BstDEI	CTNAG	6 cut(s)	161, 788, 932, 1076, 1292, 1364
BstF5I	GGATG	3 cut(s)	184, 328, 472
BstMAI	GTCTC	6 cut(s)	797, 941, 1085, 1115, 1301, 1373
BtrI	CACGTC	1 cut(s)	1145
BtsCI	GGATG	3 cut(s)	184, 328, 472
BtsIMutI	CAGTG	2 cut(s)	529, 1465
DdeI	CTNAG	6 cut(s)	161, 788, 932, 1076, 1292, 1364
Ecl136II	GAGCTC	8 cut(s)	198, 630, 774, 918, 990, 1062, 1278, 1422
Eco53kI	GAGCTC	8 cut(s)	198, 630, 774, 918, 990, 1062, 1278, 1422
Eco57I	CTGAAG	1 cut(s)	60
EcoICRI	GAGCTC	8 cut(s)	198, 630, 774, 918, 990, 1062, 1278, 1422
FaqI	GGGAC	1 cut(s)	951
FauI	CCCGC	1 cut(s)	57
FokI	GGATG	3 cut(s)	191, 335, 479
HapII	CCGG	2 cut(s)	176, 320
HpaII	CCGG	2 cut(s)	176, 320
Hpy166II	GTNNAC	1 cut(s)	910
Hpy188I	TCNGA	8 cut(s)	404, 548, 692, 836, 1196, 1329, 1412, 1484
Hpy8I	GTNNAC	1 cut(s)	910
HpyCH4IV	ACGT	1 cut(s)	1144
HpyF3I	CTNAG	6 cut(s)	161, 788, 932, 1076, 1292, 1364
HpySE526I	ACGT	1 cut(s)	1144
Kpn2I	TCCGGA	2 cut(s)	175, 319
LmnI	GCTCC	1 cut(s)	1283
LpnPI	CCDG	7 cut(s)	27, 51, 57, 93, 189, 333, 1413
LweI	GCATC	5 cut(s)	169, 313, 457, 601, 1393
MaeII	ACGT	1 cut(s)	1144
MaeIII	GTNAC	2 cut(s)	1134, 1350
MroI	TCCGGA	2 cut(s)	175, 319
MroXI	GAANNNNTTC	2 cut(s)	33, 1334
MslI	CAYNNNNRTG	1 cut(s)	263
MspI	CCGG	2 cut(s)	176, 320
Mva1269I	GAATGC	1 cut(s)	1336
NmuCI	GTSAC	2 cut(s)	1134, 1350
PctI	GAATGC	1 cut(s)	1336
PdmI	GAANNNNTTC	2 cut(s)	33, 1334
PfeI	GAWTC	8 cut(s)	172, 244, 316, 388, 532, 604, 1324, 1396
Psp124BI	GAGCTC	8 cut(s)	200, 632, 776, 920, 992, 1064, 1280, 1424
RseI	CAYNNNNRTG	1 cut(s)	263
SacI	GAGCTC	8 cut(s)	200, 632, 776, 920, 992, 1064, 1280, 1424
SfaNI	GCATC	5 cut(s)	169, 313, 457, 601, 1393
SmiMI	CAYNNNNRTG	1 cut(s)	263
SsiI	CCGC	2 cut(s)	50, 597
SspI	AATATT	1 cut(s)	99
SstI	GAGCTC	8 cut(s)	200, 632, 776, 920, 992, 1064, 1280, 1424
TaiI	ACGT	1 cut(s)	1147
TfiI	GAWTC	8 cut(s)	172, 244, 316, 388, 532, 604, 1324, 1396
TscAI	CASTG	2 cut(s)	529, 1465
TseFI	GTSAC	2 cut(s)	1134, 1350
Tsp45I	GTSAC	2 cut(s)	1134, 1350
TspDTI	ATGAA	2 cut(s)	125, 247
TspRI	CASTG	2 cut(s)	529, 1465
XapI	RAATTY	2 cut(s)	22, 33
XmnI	GAANNNNTTC	2 cut(s)	33, 1334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.