Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020467

Physical Location & Seq

Genomic Coordinates Forward (+)

49155081 .. 49156235

Gene Structure 1155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58207

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGCTAACATTCTTTCAATTTGGGGTAGCAATTGTTATTCGAGTTTCAGCTGTCCTGACAAATGGTGCATATCTTTTGAACGTCGATTGTGATCACTACTTCAATAACAGTAAAGCTGTTAAGGAAGCAATGTGTTTCATGATGGACCCAGATTATGGGAAGAAGACCTGCTATGTACAGTTCCCACAAGAAGAGGGCTGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

68

Amino Acids

7.7

Weight (kDa)

5.0

Isoelectric Point (pI)

18.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	12 - 64	3.1e-27	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020467)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356751 RchiOBHm_Chr2g0124431 RchiOBHm_Chr4g0394911
rosa_multiflora	Rmu_sc0029323.1_g000001
rosa_samantha	Rh2BG318100 Rh5DG338500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	17, 79, 103
AluBI	AGCT	2 cut(s)	50, 116
AluI	AGCT	2 cut(s)	50, 116
ApeKI	GCWGC	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	170
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	136
BclI	TGATCA	1 cut(s)	91
BfuAI	ACCTGC	1 cut(s)	176
BisI	GCNGC	1 cut(s)	199
BlsI	GCNGC	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	170
BplI	GAGNNNNNCTC	1 cut(s)	185
BsaBI	GATNNNNATC	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse3DI	GCAATG	1 cut(s)	135
Bse8I	GATNNNNATC	1 cut(s)	90
BseJI	GATNNNNATC	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseMI	GCAATG	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	185
BslI	CCNNNNNNNGG	1 cut(s)	155
Bsp1407I	TGTACA	1 cut(s)	175
Bsp143I	GATC	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	147
BspMI	ACCTGC	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	175
BssMI	GATC	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	110, 180
Bst6I	CTCTTC	1 cut(s)	186
BstAUI	TGTACA	1 cut(s)	175
BstDEI	CTNAG	1 cut(s)	204
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	185
BstV2I	GAAGAC	1 cut(s)	170
BveI	ACCTGC	1 cut(s)	176
CciI	TCATGA	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	176
CviAII	CATG	1 cut(s)	139
CviJI	RGCY	3 cut(s)	50, 116, 198
CviKI_1	RGCY	3 cut(s)	50, 116, 198
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco47I	GGWCC	1 cut(s)	145
FaeI	CATG	1 cut(s)	142
FaiI	YATR	4 cut(s)	70, 140, 156, 174
FatI	CATG	1 cut(s)	138
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	199
Fsp4HI	GCNGC	1 cut(s)	199
GluI	GCNGC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	55, 139
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	2 cut(s)	110, 180
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	68
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	1 cut(s)	142
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	3 cut(s)	68, 162, 181
Lsp1109I	GCAGC	1 cut(s)	185
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	172, 175, 203
MfeI	CAATTG	1 cut(s)	30
MluCI	AATT	2 cut(s)	17, 30
MnlI	CCTC	1 cut(s)	187
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	50
MunI	CAATTG	1 cut(s)	30
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	142
NlaIV	GGNNCC	1 cut(s)	147
PagI	TCATGA	1 cut(s)	138
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	200
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	50
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	1 cut(s)	199
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	145
SetI	ASST	4 cut(s)	52, 84, 118, 170
SgeI	CNNG	6 cut(s)	53, 67, 151, 161, 180, 200
SinI	GGWCC	1 cut(s)	145
Sse9I	AATT	2 cut(s)	17, 30
TaaI	ACNGT	2 cut(s)	110, 180
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	40, 84
TasI	AATT	2 cut(s)	17, 30
TatI	WGTACW	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TseI	GCWGC	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	127
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.