Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020467

Physical Location & Seq

Genomic Coordinates Reverse (-)

10693728 .. 10695324

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36738

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGGATGCTATAGAACAAGTAAGACCATAACACATTTAGCTCTCTCTTTGTATGAATGCTTAGTTCATAGAGAGACATGCAAGTTATGGATTACTTTTAAATCAATCATTGTTTATTCTTATATAGCTGAGAGTGAATATGATCACTACTTCAATAACAGTAAAGCTGTTAAGGAAGCAATGTGTTTCATGATGGACCCAGATTATGGGAAGAAGACCTGCTATGTACAGTTCCCACAAGAAGAGGGCTGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

85

Amino Acids

9.99

Weight (kDa)

6.26

Isoelectric Point (pI)

32.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	40 - 81	1.2e-15	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020467)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356751 RchiOBHm_Chr2g0124431 RchiOBHm_Chr4g0394911
rosa_multiflora	Rmu_sc0029323.1_g000001
rosa_samantha	Rh2BG318100 Rh5DG338500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	227
AccB7I	CCANNNNNTGG	1 cut(s)	206
AfaI	GTAC	1 cut(s)	228
AfiI	CCNNNNNNNGG	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	154
AluBI	AGCT	3 cut(s)	41, 128, 167
AluI	AGCT	3 cut(s)	41, 128, 167
Alw26I	GTCTC	1 cut(s)	68
ApeKI	GCWGC	1 cut(s)	249
AspS9I	GGNCC	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	196
BbsI	GAAGAC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	187
BclI	TGATCA	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	68
BfmI	CTRYAG	1 cut(s)	10
BfuAI	ACCTGC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	1 cut(s)	236
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	186
BseGI	GGATG	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	68
BsmI	GAATGC	1 cut(s)	62
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	198
BspMI	ACCTGC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	186
BsrGI	TGTACA	1 cut(s)	226
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	2 cut(s)	161, 231
Bst6I	CTCTTC	1 cut(s)	237
BstAUI	TGTACA	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	61, 129, 255
BstF5I	GGATG	1 cut(s)	11
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	10
BstV1I	GCAGC	1 cut(s)	236
BstV2I	GAAGAC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	11
BveI	ACCTGC	1 cut(s)	227
CciI	TCATGA	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	1 cut(s)	227
CviAII	CATG	2 cut(s)	78, 190
CviJI	RGCY	4 cut(s)	41, 128, 167, 249
CviKI_1	RGCY	4 cut(s)	41, 128, 167, 249
CviQI	GTAC	1 cut(s)	227
DdeI	CTNAG	3 cut(s)	61, 129, 255
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
DraI	TTTAAA	1 cut(s)	100
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	196
FaeI	CATG	2 cut(s)	81, 193
FatI	CATG	2 cut(s)	77, 189
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	250
Hin1II	CATG	2 cut(s)	81, 193
Hpy188III	TCNNGA	1 cut(s)	190
HpyCH4III	ACNGT	2 cut(s)	161, 231
HpyCH4V	TGCA	1 cut(s)	81
HpyF3I	CTNAG	3 cut(s)	61, 129, 255
Hsp92II	CATG	2 cut(s)	81, 193
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	2 cut(s)	213, 232
Lsp1109I	GCAGC	1 cut(s)	236
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	3 cut(s)	223, 226, 254
MnlI	CCTC	1 cut(s)	238
MseI	TTAA	2 cut(s)	99, 171
Mva1269I	GAATGC	1 cut(s)	62
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	81, 193
NlaIV	GGNNCC	1 cut(s)	198
NspI	RCATGY	1 cut(s)	81
PagI	TCATGA	1 cut(s)	189
PctI	GAATGC	1 cut(s)	62
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	1 cut(s)	251
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	196
RsaI	GTAC	1 cut(s)	228
RsaNI	GTAC	1 cut(s)	227
SaqAI	TTAA	2 cut(s)	99, 171
SatI	GCNGC	1 cut(s)	250
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	196
SetI	ASST	4 cut(s)	43, 130, 169, 221
SfcI	CTRYAG	1 cut(s)	10
SgeI	CNNG	7 cut(s)	30, 90, 94, 202, 212, 231, 251
SinI	GGWCC	1 cut(s)	196
TaaI	ACNGT	2 cut(s)	161, 231
TatI	WGTACW	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	99, 171
Tru9I	TTAA	2 cut(s)	99, 171
TseI	GCWGC	1 cut(s)	249
TspDTI	ATGAA	3 cut(s)	56, 69, 178
Van91I	CCANNNNNTGG	1 cut(s)	206
VpaK11BI	GGWCC	1 cut(s)	196
XceI	RCATGY	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.