Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0020467

Physical Location & Seq

Genomic Coordinates Forward (+)

37831765 .. 37837092

Gene Structure 5328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG318100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGTCTCCTCCCATTGGGATCGCAATTGAAAGGGGCTTCTGGGGCGGAAGAGGACTGCGCATATTGGGTCCAAGAAAGCTGAGAGAGGTAGTGATGGCTCTTCTATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAATTCGAGTTTCAGCTGTCCTGACAAATGGTGCATATCTTTTGAACGTCGATTGTGATCACTACTTCAATAACAGTAAAGCTGTTAAGGAAGCAATGTGTTTCATGATGGACCCAGATTATGGGAAGAAGACCTGCTATGTACAGTTCCCACAAGAAGAGGGCTGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

102

Amino Acids

11.51

Weight (kDa)

8.31

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	43 - 98	1.1e-26	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020467)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356751 RchiOBHm_Chr2g0124431 RchiOBHm_Chr4g0394911
rosa_multiflora	Rmu_sc0029323.1_g000001
rosa_samantha	Rh2BG318100 Rh5DG338500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	59
Acc36I	ACCTGC	1 cut(s)	278
AccB7I	CCANNNNNTGG	1 cut(s)	257
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	138
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	2 cut(s)	14, 257
AgsI	TTSAA	3 cut(s)	29, 181, 205
AluBI	AGCT	3 cut(s)	79, 152, 218
AluI	AGCT	3 cut(s)	79, 152, 218
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	26
AoxI	GGCC	1 cut(s)	123
ApeKI	GCWGC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	68, 247
AvaII	GGWCC	2 cut(s)	68, 247
BbsI	GAAGAC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	2 cut(s)	88, 238
BclI	TGATCA	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	278
BisI	GCNGC	1 cut(s)	301
BlsI	GCNGC	1 cut(s)	302
Bme18I	GGWCC	2 cut(s)	68, 247
BmgT120I	GGNCC	2 cut(s)	68, 247
BmiI	GGNNCC	2 cut(s)	69, 249
BpiI	GAAGAC	1 cut(s)	272
BplI	GAGNNNNNCTC	1 cut(s)	287
BsaBI	GATNNNNATC	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 257
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	192
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	2 cut(s)	14, 257
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	287
BshFI	GGCC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	14, 257
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	277
Bsp143I	GATC	2 cut(s)	18, 193
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	125
BspCNI	CTCAG	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	2 cut(s)	69, 249
BspMI	ACCTGC	1 cut(s)	278
BspPI	GGATC	1 cut(s)	26
BspQI	GCTCTTC	1 cut(s)	105
BsrDI	GCAATG	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	277
BssMI	GATC	2 cut(s)	18, 193
Bst4CI	ACNGT	2 cut(s)	212, 282
Bst6I	CTCTTC	3 cut(s)	43, 105, 288
BstAUI	TGTACA	1 cut(s)	277
BstDEI	CTNAG	2 cut(s)	80, 306
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	21, 196
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	18, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstV1I	GCAGC	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	125
BveI	ACCTGC	1 cut(s)	278
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	68, 247
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	2 cut(s)	133, 241
CviJI	RGCY	7 cut(s)	36, 79, 98, 125, 152, 218, 300
CviKI_1	RGCY	7 cut(s)	36, 79, 98, 125, 152, 218, 300
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	2 cut(s)	80, 306
DpnI	GATC	2 cut(s)	20, 195
DpnII	GATC	2 cut(s)	18, 193
Eam1104I	CTCTTC	3 cut(s)	43, 105, 288
EarI	CTCTTC	3 cut(s)	43, 105, 288
EciI	GGCGGA	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	68, 247
EcoRI	GAATTC	1 cut(s)	138
FaeI	CATG	2 cut(s)	136, 244
FaiI	YATR	7 cut(s)	62, 106, 134, 172, 242, 258, 276
FatI	CATG	2 cut(s)	132, 240
FbaI	TGATCA	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	301
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	301
HaeIII	GGCC	1 cut(s)	125
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	136, 244
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	157, 241
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	2 cut(s)	103, 110
HpyCH4III	ACNGT	2 cut(s)	212, 282
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	132, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	2 cut(s)	80, 306
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	136, 244
HspAI	GCGC	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	18, 193
LguI	GCTCTTC	1 cut(s)	105
LpnPI	CCDG	5 cut(s)	25, 107, 170, 264, 283
Lsp1109I	GCAGC	1 cut(s)	287
MaeII	ACGT	1 cut(s)	183
MalI	GATC	2 cut(s)	20, 195
MboI	GATC	2 cut(s)	18, 193
MboII	GAAGA	6 cut(s)	60, 92, 125, 274, 277, 305
MfeI	CAATTG	1 cut(s)	24
MluCI	AATT	2 cut(s)	24, 138
MnlI	CCTC	4 cut(s)	18, 44, 79, 289
MseI	TTAA	1 cut(s)	222
MspA1I	CMGCKG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	24
MwoI	GCNNNNNNNGC	1 cut(s)	42
NdeII	GATC	2 cut(s)	18, 193
NlaIII	CATG	2 cut(s)	136, 244
NlaIV	GGNNCC	2 cut(s)	69, 249
NsbI	TGCGCA	1 cut(s)	59
PagI	TCATGA	1 cut(s)	240
PciSI	GCTCTTC	1 cut(s)	105
PflMI	CCANNNNNTGG	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	69, 249
PspPI	GGNCC	2 cut(s)	68, 247
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	222
SatI	GCNGC	1 cut(s)	301
Sau3AI	GATC	2 cut(s)	18, 193
Sau96I	GGNCC	2 cut(s)	68, 247
SetI	ASST	7 cut(s)	81, 90, 121, 154, 186, 220, 272
SinI	GGWCC	2 cut(s)	68, 247
Sse9I	AATT	2 cut(s)	24, 138
SsiI	CCGC	1 cut(s)	45
TaaI	ACNGT	2 cut(s)	212, 282
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	142, 186
TasI	AATT	2 cut(s)	24, 138
TatI	WGTACW	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseI	GCWGC	1 cut(s)	300
TspDTI	ATGAA	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	68, 247
XapI	RAATTY	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.