Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020467

Physical Location & Seq

Genomic Coordinates Forward (+)

37734446 .. 37735908

Gene Structure 1463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49662

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCTCTTCTATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCATAGTTTCTGTATTCGAGTTTCAGCTGTCCTGACAAATGGTGCATATCTTTTGAACGTCGATTGTGATCACTACTTCAATAACAGTAAAGCTGTTAAGGAAGCAATGTGTTTCATGATGGACCCAGATTATGGGAAGAAGACCTGCTATGTACAGTTCCCACAAGAAGAGGGCTGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

78

Amino Acids

8.89

Weight (kDa)

5.51

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	22 - 74	1.2e-26	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020467)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356751 RchiOBHm_Chr2g0124431 RchiOBHm_Chr4g0394911
rosa_multiflora	Rmu_sc0029323.1_g000001
rosa_samantha	Rh2BG318100 Rh5DG338500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	109, 133
AluBI	AGCT	2 cut(s)	80, 146
AluI	AGCT	2 cut(s)	80, 146
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	200
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	1 cut(s)	166
BclI	TGATCA	1 cut(s)	121
BfuAI	ACCTGC	1 cut(s)	206
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	177
BpiI	GAAGAC	1 cut(s)	200
BplI	GAGNNNNNCTC	1 cut(s)	215
BsaBI	GATNNNNATC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse3DI	GCAATG	1 cut(s)	165
Bse8I	GATNNNNATC	1 cut(s)	120
BseJI	GATNNNNATC	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMI	GCAATG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	215
BshFI	GGCC	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	185
BsnI	GGCC	1 cut(s)	32
Bsp1407I	TGTACA	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	121
BspANI	GGCC	1 cut(s)	32
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	177
BspMI	ACCTGC	1 cut(s)	206
BspQI	GCTCTTC	1 cut(s)	12
BsrDI	GCAATG	1 cut(s)	165
BsrGI	TGTACA	1 cut(s)	205
BssMI	GATC	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	140, 210
Bst6I	CTCTTC	2 cut(s)	12, 216
BstAUI	TGTACA	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	234
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	215
BstV2I	GAAGAC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	32
BveI	ACCTGC	1 cut(s)	206
CciI	TCATGA	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	2 cut(s)	40, 169
CviJI	RGCY	5 cut(s)	5, 32, 80, 146, 228
CviKI_1	RGCY	5 cut(s)	5, 32, 80, 146, 228
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	2 cut(s)	12, 216
EarI	CTCTTC	2 cut(s)	12, 216
Eco47I	GGWCC	1 cut(s)	175
FaeI	CATG	2 cut(s)	43, 172
FaiI	YATR	7 cut(s)	13, 41, 57, 100, 170, 186, 204
FatI	CATG	2 cut(s)	39, 168
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	229
GluI	GCNGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	43, 172
Hpy188III	TCNNGA	2 cut(s)	85, 169
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	2 cut(s)	10, 17
HpyCH4III	ACNGT	2 cut(s)	140, 210
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	39, 98
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	43, 172
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LguI	GCTCTTC	1 cut(s)	12
LpnPI	CCDG	4 cut(s)	14, 98, 192, 211
Lsp1109I	GCAGC	1 cut(s)	215
MaeII	ACGT	1 cut(s)	111
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	6 cut(s)	32, 41, 44, 202, 205, 233
MnlI	CCTC	1 cut(s)	217
MseI	TTAA	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	80
NdeII	GATC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	43, 172
NlaIV	GGNNCC	1 cut(s)	177
PagI	TCATGA	1 cut(s)	168
PciSI	GCTCTTC	1 cut(s)	12
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	1 cut(s)	121
Sau96I	GGNCC	1 cut(s)	175
SetI	ASST	5 cut(s)	28, 82, 114, 148, 200
SgeI	CNNG	9 cut(s)	41, 46, 52, 83, 97, 181, 191, 210, 230
SinI	GGWCC	1 cut(s)	175
TaaI	ACNGT	2 cut(s)	140, 210
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	70, 114
TatI	WGTACW	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseI	GCWGC	1 cut(s)	228
TspDTI	ATGAA	2 cut(s)	44, 157
Van91I	CCANNNNNTGG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.