Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029323.1

Orthogroup ID

OG0020467

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5060

Gene Structure 5060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029323.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

attcgagtttcagctgtcctgacaaatggtgcatatcttttgaacgtcgattgtgatcactacttcaataacagtaaagctgttaaggaagcaatgtgtttcatgatggacccagcttatgggaagaagacctgctatgtacagttcccacaacgtttcgatgggattgacatgcatgatcgatatgccaatcctattgctacagttgttaccattgctgagattctcaagaacaatggattggctgttgagaagaagatcatcaccaaaactgttgacatgagggaggatgcaggagggcgcccaattcagaaagctaagattgagatacttctgggaaagtcagacaagtttgacgagataatggctgctgctgccgaggaagccaatgaatatgaggagcagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

136

Amino Acids

15.23

Weight (kDa)

5.21

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020467)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356751 RchiOBHm_Chr2g0124431 RchiOBHm_Chr4g0394911
rosa_multiflora	Rmu_sc0029323.1_g000001
rosa_samantha	Rh2BG318100 Rh5DG338500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	300
AccB7I	CCANNNNNTGG	1 cut(s)	119
AclI	AACGTT	1 cut(s)	154
AcyI	GRCGYC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	2 cut(s)	43, 67
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	4 cut(s)	14, 80, 116, 317
AluI	AGCT	4 cut(s)	14, 80, 116, 317
ApeKI	GCWGC	3 cut(s)	368, 371, 374
AspLEI	GCGC	1 cut(s)	303
AspS9I	GGNCC	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	3 cut(s)	355, 358, 361
BccI	CCATC	2 cut(s)	100, 155
BclI	TGATCA	1 cut(s)	55
BfmI	CTRYAG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	304
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	3 cut(s)	369, 372, 375
BlsI	GCNGC	3 cut(s)	370, 373, 376
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	111, 302
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	212
Bsa29I	ATCGAT	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	301
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse3DI	GCAATG	2 cut(s)	99, 213
Bse8I	GATNNNNATC	1 cut(s)	54
BseCI	ATCGAT	1 cut(s)	181
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	295
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMI	GCAATG	2 cut(s)	99, 213
BseMII	CTCAG	1 cut(s)	210
BseXI	GCAGC	3 cut(s)	355, 358, 361
BseYI	CCCAGC	1 cut(s)	112
BshNI	GGYRCC	1 cut(s)	300
BshVI	ATCGAT	1 cut(s)	181
BslI	CCNNNNNNNGG	1 cut(s)	119
Bsp1407I	TGTACA	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	55, 178, 258
BspCNI	CTCAG	1 cut(s)	211
BspDI	ATCGAT	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	2 cut(s)	111, 302
BspMI	ACCTGC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	300
BsrDI	GCAATG	2 cut(s)	99, 213
BsrGI	TGTACA	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	3 cut(s)	55, 178, 258
BssNI	GRCGYC	1 cut(s)	301
Bst4CI	ACNGT	4 cut(s)	74, 144, 205, 274
BstACI	GRCGYC	1 cut(s)	301
BstAUI	TGTACA	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	219, 318
BstF5I	GGATG	1 cut(s)	295
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	303
BstKTI	GATC	3 cut(s)	58, 181, 261
BstMBI	GATC	3 cut(s)	55, 178, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 383
BstNSI	RCATGY	1 cut(s)	175
BstSFI	CTRYAG	1 cut(s)	201
BstV1I	GCAGC	3 cut(s)	355, 358, 361
BstV2I	GAAGAC	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	181
BsuTUI	ATCGAT	1 cut(s)	181
BtsCI	GGATG	1 cut(s)	295
BveI	ACCTGC	1 cut(s)	140
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	109
ClaI	ATCGAT	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	4 cut(s)	103, 172, 176, 280
CviJI	RGCY	7 cut(s)	14, 80, 116, 245, 317, 368, 386
CviKI_1	RGCY	7 cut(s)	14, 80, 116, 245, 317, 368, 386
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	2 cut(s)	219, 318
DinI	GGCGCC	1 cut(s)	302
DpnI	GATC	3 cut(s)	57, 180, 260
DpnII	GATC	3 cut(s)	55, 178, 258
Eco47I	GGWCC	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	177
EgeI	GGCGCC	1 cut(s)	302
EheI	GGCGCC	1 cut(s)	302
FaeI	CATG	4 cut(s)	106, 175, 179, 283
FaiI	YATR	9 cut(s)	34, 104, 120, 138, 173, 177, 186, 281, 396
FatI	CATG	4 cut(s)	102, 171, 175, 279
FbaI	TGATCA	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	369, 372, 375
FokI	GGATG	1 cut(s)	302
Fsp4HI	GCNGC	3 cut(s)	369, 372, 375
GlaI	GCGC	1 cut(s)	302
GluI	GCNGC	3 cut(s)	369, 372, 375
GsaI	CCCAGC	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	304
HhaI	GCGC	1 cut(s)	303
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	4 cut(s)	106, 175, 179, 283
Hin6I	GCGC	1 cut(s)	301
HinP1I	GCGC	1 cut(s)	301
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HinfI	GANTC	1 cut(s)	223
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188I	TCNGA	2 cut(s)	312, 346
Hpy188III	TCNNGA	3 cut(s)	19, 103, 229
Hpy8I	GTNNAC	1 cut(s)	277
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4III	ACNGT	4 cut(s)	74, 144, 205, 274
HpyCH4IV	ACGT	2 cut(s)	45, 154
HpyCH4V	TGCA	3 cut(s)	32, 175, 293
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 383
HpyF3I	CTNAG	2 cut(s)	219, 318
HpySE526I	ACGT	2 cut(s)	45, 154
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	4 cut(s)	106, 175, 179, 283
HspAI	GCGC	1 cut(s)	301
KasI	GGCGCC	1 cut(s)	300
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	55, 178, 258
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	5 cut(s)	32, 126, 145, 279, 320
Lsp1109I	GCAGC	3 cut(s)	355, 358, 361
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	2 cut(s)	45, 154
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	3 cut(s)	57, 180, 260
MboI	GATC	3 cut(s)	55, 178, 258
MboII	GAAGA	4 cut(s)	136, 139, 265, 268
MluCI	AATT	1 cut(s)	306
Mly113I	GGCGCC	1 cut(s)	301
MnlI	CCTC	5 cut(s)	276, 280, 290, 373, 391
Mph1103I	ATGCAT	1 cut(s)	177
MseI	TTAA	1 cut(s)	84
MspA1I	CMGCKG	1 cut(s)	14
MwoI	GCNNNNNNNGC	2 cut(s)	374, 383
NarI	GGCGCC	1 cut(s)	301
NdeII	GATC	3 cut(s)	55, 178, 258
NlaIII	CATG	4 cut(s)	106, 175, 179, 283
NlaIV	GGNNCC	2 cut(s)	111, 302
NmeAIII	GCCGAG	1 cut(s)	403
NsiI	ATGCAT	1 cut(s)	177
NspI	RCATGY	1 cut(s)	175
PagI	TCATGA	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	370, 373, 376
PluTI	GGCGCC	1 cut(s)	304
Psp1406I	AACGTT	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	111, 302
PspPI	GGNCC	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	14
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	3 cut(s)	369, 372, 375
Sau3AI	GATC	3 cut(s)	55, 178, 258
Sau96I	GGNCC	1 cut(s)	109
SetI	ASST	7 cut(s)	16, 48, 82, 118, 134, 157, 319
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	201
SfoI	GGCGCC	1 cut(s)	302
SinI	GGWCC	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	306
SspDI	GGCGCC	1 cut(s)	300
TaaI	ACNGT	4 cut(s)	74, 144, 205, 274
TaiI	ACGT	2 cut(s)	48, 157
TaqI	TCGA	4 cut(s)	4, 48, 159, 181
TasI	AATT	1 cut(s)	306
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TseI	GCWGC	3 cut(s)	368, 371, 374
TspDTI	ATGAA	2 cut(s)	91, 405
Van91I	CCANNNNNTGG	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	109
XceI	RCATGY	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.