Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0020467

Physical Location & Seq

Genomic Coordinates Forward (+)

45551415 .. 45555091

Gene Structure 3677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG338500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGATTCGAGTTTCAGCTGTCCTGACAAATGGTGCATATCTTTTGAACGTCGATTGTGATCACTACTTCAATAACAGTAAAGCTGTTAAGGAAGCAATGTGTTTCATGATGGACCCAGATTATGGGAAGAAGACCTGCTATGTACAGTTCCCACAAGAAGAGGGCTGCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009628 GO:0009651 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042538 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

57

Amino Acids

6.48

Weight (kDa)

5.0

Isoelectric Point (pI)

20.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	1 - 53	2.5e-27	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020467)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0356751 RchiOBHm_Chr2g0124431 RchiOBHm_Chr4g0394911
rosa_multiflora	Rmu_sc0029323.1_g000001
rosa_samantha	Rh2BG318100 Rh5DG338500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	143
AccB7I	CCANNNNNTGG	1 cut(s)	122
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	46, 70
AluBI	AGCT	2 cut(s)	17, 83
AluI	AGCT	2 cut(s)	17, 83
ApeKI	GCWGC	1 cut(s)	165
AspS9I	GGNCC	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	1 cut(s)	103
BclI	TGATCA	1 cut(s)	58
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	137
BplI	GAGNNNNNCTC	1 cut(s)	152
BsaBI	GATNNNNATC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse3DI	GCAATG	1 cut(s)	102
Bse8I	GATNNNNATC	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	122
Bsp1407I	TGTACA	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	143
BsrDI	GCAATG	1 cut(s)	102
BsrGI	TGTACA	1 cut(s)	142
BssMI	GATC	1 cut(s)	58
Bst4CI	ACNGT	2 cut(s)	77, 147
Bst6I	CTCTTC	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	171
BstKTI	GATC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	152
BstV2I	GAAGAC	1 cut(s)	137
BveI	ACCTGC	1 cut(s)	143
CciI	TCATGA	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	3 cut(s)	17, 83, 165
CviKI_1	RGCY	3 cut(s)	17, 83, 165
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	112
FaeI	CATG	1 cut(s)	109
FaiI	YATR	4 cut(s)	37, 107, 123, 141
FatI	CATG	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	58
Fnu4HI	GCNGC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	166
GluI	GCNGC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	1 cut(s)	4
Hpy188III	TCNNGA	2 cut(s)	22, 106
Hpy99I	CGWCG	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	77, 147
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	35
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	109
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	58
LpnPI	CCDG	3 cut(s)	35, 129, 148
Lsp1109I	GCAGC	1 cut(s)	152
MaeII	ACGT	1 cut(s)	48
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	3 cut(s)	139, 142, 170
MnlI	CCTC	1 cut(s)	154
MseI	TTAA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	17
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	114
PagI	TCATGA	1 cut(s)	105
PfeI	GAWTC	1 cut(s)	4
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	112
SetI	ASST	4 cut(s)	19, 51, 85, 137
SgeI	CNNG	6 cut(s)	20, 34, 118, 128, 147, 167
SinI	GGWCC	1 cut(s)	112
TaaI	ACNGT	2 cut(s)	77, 147
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	2 cut(s)	7, 51
TatI	WGTACW	1 cut(s)	142
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	94
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.