chloroplast RF68
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1140100.v1.1 MD03G1269900.v1.1 |
| rosa_chinensis | RchiOBHm_Chr2g0095251 RchiOBHm_Chr4g0392721 RchiOBHm_Chr7g0221131 |
| rosa_samantha | Rh4CG047300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 83 |
| AcsI | RAATTY | 1 cut(s) | 182 |
| AfaI | GTAC | 1 cut(s) | 81 |
| AluBI | AGCT | 1 cut(s) | 131 |
| AluI | AGCT | 1 cut(s) | 131 |
| Alw21I | GWGCWC | 1 cut(s) | 9 |
| AlwI | GGATC | 1 cut(s) | 83 |
| ApeKI | GCWGC | 1 cut(s) | 131 |
| ApoI | RAATTY | 1 cut(s) | 182 |
| AsuC2I | CCSGG | 1 cut(s) | 114 |
| AsuHPI | GGTGA | 1 cut(s) | 77 |
| Bbv12I | GWGCWC | 1 cut(s) | 9 |
| BbvI | GCAGC | 1 cut(s) | 118 |
| BcnI | CCSGG | 1 cut(s) | 114 |
| BfaI | CTAG | 1 cut(s) | 211 |
| BisI | GCNGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 1 cut(s) | 133 |
| Bme1390I | CCNGG | 1 cut(s) | 114 |
| BmrFI | CCNGG | 1 cut(s) | 114 |
| BpmI | CTGGAG | 1 cut(s) | 143 |
| BpuMI | CCSGG | 1 cut(s) | 114 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 63, 93 |
| BseXI | GCAGC | 1 cut(s) | 118 |
| BsiHKAI | GWGCWC | 1 cut(s) | 9 |
| BsiSI | CCGG | 1 cut(s) | 114 |
| Bsp1286I | GDGCHC | 1 cut(s) | 9 |
| Bsp143I | GATC | 2 cut(s) | 44, 75 |
| BspPI | GGATC | 1 cut(s) | 83 |
| BssMI | GATC | 2 cut(s) | 44, 75 |
| BstKTI | GATC | 2 cut(s) | 47, 78 |
| BstMBI | GATC | 2 cut(s) | 44, 75 |
| BstSCI | CCNGG | 1 cut(s) | 112 |
| BstV1I | GCAGC | 1 cut(s) | 118 |
| Csp6I | GTAC | 1 cut(s) | 80 |
| CviAII | CATG | 1 cut(s) | 104 |
| CviJI | RGCY | 2 cut(s) | 91, 131 |
| CviKI_1 | RGCY | 2 cut(s) | 91, 131 |
| CviQI | GTAC | 1 cut(s) | 80 |
| DpnI | GATC | 2 cut(s) | 46, 77 |
| DpnII | GATC | 2 cut(s) | 44, 75 |
| EcoRI | GAATTC | 1 cut(s) | 182 |
| FaeI | CATG | 1 cut(s) | 107 |
| FaiI | YATR | 1 cut(s) | 105 |
| FatI | CATG | 1 cut(s) | 103 |
| Fnu4HI | GCNGC | 1 cut(s) | 132 |
| Fsp4HI | GCNGC | 1 cut(s) | 132 |
| FspBI | CTAG | 1 cut(s) | 211 |
| GluI | GCNGC | 1 cut(s) | 132 |
| GsuI | CTGGAG | 1 cut(s) | 143 |
| HapII | CCGG | 1 cut(s) | 114 |
| Hin1II | CATG | 1 cut(s) | 107 |
| HpaII | CCGG | 1 cut(s) | 114 |
| HphI | GGTGA | 1 cut(s) | 77 |
| Hpy188III | TCNNGA | 2 cut(s) | 122, 165 |
| HpyAV | CCTTC | 2 cut(s) | 167, 171 |
| HpyCH4IV | ACGT | 1 cut(s) | 178 |
| HpyCH4V | TGCA | 1 cut(s) | 134 |
| HpySE526I | ACGT | 1 cut(s) | 178 |
| Hsp92II | CATG | 1 cut(s) | 107 |
| Kzo9I | GATC | 2 cut(s) | 44, 75 |
| LmnI | GCTCC | 1 cut(s) | 4 |
| LpnPI | CCDG | 3 cut(s) | 46, 107, 127 |
| Lsp1109I | GCAGC | 1 cut(s) | 118 |
| MaeI | CTAG | 1 cut(s) | 211 |
| MaeII | ACGT | 1 cut(s) | 178 |
| MaeIII | GTNAC | 1 cut(s) | 65 |
| MalI | GATC | 2 cut(s) | 46, 77 |
| MboI | GATC | 2 cut(s) | 44, 75 |
| MboII | GAAGA | 2 cut(s) | 14, 185 |
| MhlI | GDGCHC | 1 cut(s) | 9 |
| MluCI | AATT | 1 cut(s) | 182 |
| MnlI | CCTC | 2 cut(s) | 65, 110 |
| MspI | CCGG | 1 cut(s) | 114 |
| MspR9I | CCNGG | 1 cut(s) | 114 |
| NciI | CCSGG | 1 cut(s) | 114 |
| NdeII | GATC | 2 cut(s) | 44, 75 |
| NlaIII | CATG | 1 cut(s) | 107 |
| NmuCI | GTSAC | 1 cut(s) | 65 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 75, 84 |
| PfoI | TCCNGGA | 1 cut(s) | 112 |
| PkrI | GCNGC | 1 cut(s) | 133 |
| RsaI | GTAC | 1 cut(s) | 81 |
| RsaNI | GTAC | 1 cut(s) | 80 |
| SatI | GCNGC | 1 cut(s) | 132 |
| Sau3AI | GATC | 2 cut(s) | 44, 75 |
| ScrFI | CCNGG | 1 cut(s) | 114 |
| SduI | GDGCHC | 1 cut(s) | 9 |
| SetI | ASST | 4 cut(s) | 12, 121, 133, 181 |
| Sse9I | AATT | 1 cut(s) | 182 |
| SspMI | CTAG | 1 cut(s) | 211 |
| StyD4I | CCNGG | 1 cut(s) | 112 |
| TaiI | ACGT | 1 cut(s) | 181 |
| TaqI | TCGA | 1 cut(s) | 87 |
| TasI | AATT | 1 cut(s) | 182 |
| TseFI | GTSAC | 1 cut(s) | 65 |
| TseI | GCWGC | 1 cut(s) | 131 |
| Tsp45I | GTSAC | 1 cut(s) | 65 |
| TspDTI | ATGAA | 2 cut(s) | 45, 92 |
| TspGWI | ACGGA | 1 cut(s) | 84 |
| XapI | RAATTY | 1 cut(s) | 182 |
| XspI | CTAG | 1 cut(s) | 211 |