RchiOBHm_Chr7g0221131

Protein of unknown function (DUF2647)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0020370
Physical Location & Seq
Forward (+)
42042770 .. 42043199
430 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19788

Sequence Viewer

Length: 384 bp
ATGGATAGTTCAATGTGCTCATTAGCGCCTGACCTTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACTTCTCCTGTTCGAACTGGGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGGGAGGGACCACCACGGCTCCTTTCTTCTTGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGACCTCAATGGAAAATAAAACGGAGCACCTAAGAATGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTTCATGTTTTTCCCTGAGGTCTGGAGAAAGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2647

Protein Analysis

127

Amino Acids

14.67

Weight (kDa)

6.4

Isoelectric Point (pI)

47.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2647 PF10839 32 - 52 9.4e-06 Protein of unknown function (DUF2647)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020370)

Species Orthologous Gene IDs
malus_domestica MD00G1140100.v1.1 MD03G1269900.v1.1
rosa_chinensis RchiOBHm_Chr2g0095251 RchiOBHm_Chr4g0392721 RchiOBHm_Chr7g0221131
rosa_samantha Rh4CG047300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 6 cut(s) 53, 93, 104, 129, 142, 332
AfaI GTAC 2 cut(s) 73, 330
AgsI TTSAA 1 cut(s) 12
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Alw21I GWGCWC 3 cut(s) 20, 218, 258
AlwI GGATC 6 cut(s) 53, 93, 104, 129, 142, 332
Ama87I CYCGRG 1 cut(s) 211
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 145
AsuC2I CCSGG 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 106, 326
AsuII TTCGAA 1 cut(s) 85
AvaI CYCGRG 1 cut(s) 211
AvaII GGWCC 1 cut(s) 145
AxyI CCTNAGG 1 cut(s) 363
BamHI GGATCC 1 cut(s) 134
BauI CACGAG 1 cut(s) 128
Bbv12I GWGCWC 3 cut(s) 20, 218, 258
BceAI ACGGC 1 cut(s) 169
BcnI CCSGG 1 cut(s) 139
BfoI RGCGCY 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 145
BmeT110I CYCGRG 1 cut(s) 211
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 3 cut(s) 136, 146, 157
BmrFI CCNGG 1 cut(s) 139
BmrI ACTGGG 1 cut(s) 99
BmuI ACTGGG 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 85
BpuEI CTTGAG 2 cut(s) 56, 188
BpuMI CCSGG 1 cut(s) 139
BsaBI GATNNNNATC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 52, 151
BsaXI ACNNNNNCTCC 4 cut(s) 140, 170, 312, 342
Bse1I ACTGG 1 cut(s) 94
Bse21I CCTNAGG 1 cut(s) 363
Bse8I GATNNNNATC 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 52, 151
BseGI GGATG 2 cut(s) 48, 180
BseJI GATNNNNATC 1 cut(s) 44
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 94
BsiHKAI GWGCWC 3 cut(s) 20, 218, 258
BsiHKCI CYCGRG 1 cut(s) 211
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 158
BsmFI GGGAC 1 cut(s) 158
BsoBI CYCGRG 1 cut(s) 211
Bsp119I TTCGAA 1 cut(s) 85
Bsp1286I GDGCHC 3 cut(s) 20, 218, 258
Bsp143I GATC 6 cut(s) 45, 98, 109, 134, 293, 324
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 3 cut(s) 136, 146, 157
BspPI GGATC 6 cut(s) 53, 93, 104, 129, 142, 332
BspT104I TTCGAA 1 cut(s) 85
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 52, 151
BssMI GATC 6 cut(s) 45, 98, 109, 134, 293, 324
BssSI CACGAG 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 260, 363
BstDSI CCRYGG 1 cut(s) 151
BstF5I GGATG 2 cut(s) 48, 180
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 6 cut(s) 48, 101, 112, 137, 296, 327
BstMBI GATC 6 cut(s) 45, 98, 109, 134, 293, 324
BstSCI CCNGG 1 cut(s) 137
BstX2I RGATCY 3 cut(s) 98, 109, 134
BstYI RGATCY 3 cut(s) 98, 109, 134
Bsu36I CCTNAGG 1 cut(s) 363
BtgI CCRYGG 1 cut(s) 151
BtsCI GGATG 2 cut(s) 48, 180
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 72, 329
CviAII CATG 2 cut(s) 66, 352
CviJI RGCY 3 cut(s) 156, 204, 340
CviKI_1 RGCY 3 cut(s) 156, 204, 340
CviQI GTAC 2 cut(s) 72, 329
DdeI CTNAG 2 cut(s) 260, 363
DpnI GATC 6 cut(s) 47, 100, 111, 136, 295, 326
DpnII GATC 6 cut(s) 45, 98, 109, 134, 293, 324
Eco130I CCWWGG 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 145
Eco81I CCTNAGG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 2 cut(s) 69, 355
FaiI YATR 5 cut(s) 67, 178, 195, 197, 353
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 65, 351
FokI GGATG 2 cut(s) 35, 167
GlaI GCGC 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 29
HapII CCGG 1 cut(s) 138
HhaI GCGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 69, 355
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 172
HpaII CCGG 1 cut(s) 138
HphI GGTGA 2 cut(s) 106, 326
Hpy188III TCNNGA 3 cut(s) 167, 211, 370
HpyF3I CTNAG 2 cut(s) 260, 363
Hsp92II CATG 2 cut(s) 69, 355
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 6 cut(s) 45, 98, 109, 134, 293, 324
LmnI GCTCC 2 cut(s) 161, 253
LpnPI CCDG 8 cut(s) 42, 75, 93, 151, 204, 295, 355, 375
MaeIII GTNAC 1 cut(s) 314
MalI GATC 6 cut(s) 47, 100, 111, 136, 295, 326
MboI GATC 6 cut(s) 45, 98, 109, 134, 293, 324
MboII GAAGA 2 cut(s) 155, 263
MflI RGATCY 3 cut(s) 98, 109, 134
MhlI GDGCHC 3 cut(s) 20, 218, 258
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 4 cut(s) 135, 244, 314, 358
MslI CAYNNNNRTG 1 cut(s) 64
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 139
NciI CCSGG 1 cut(s) 139
NdeII GATC 6 cut(s) 45, 98, 109, 134, 293, 324
NlaIII CATG 2 cut(s) 69, 355
NlaIV GGNNCC 3 cut(s) 136, 146, 157
NmuCI GTSAC 1 cut(s) 314
NspV TTCGAA 1 cut(s) 85
PaeR7I CTCGAG 1 cut(s) 211
PcsI WCGNNNNNNNCGW 2 cut(s) 324, 333
PfeI GAWTC 1 cut(s) 172
PfoI TCCNGGA 1 cut(s) 137
PspN4I GGNNCC 3 cut(s) 136, 146, 157
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 3 cut(s) 98, 109, 134
RsaI GTAC 2 cut(s) 73, 330
RsaNI GTAC 2 cut(s) 72, 329
RseI CAYNNNNRTG 1 cut(s) 64
Sau3AI GATC 6 cut(s) 45, 98, 109, 134, 293, 324
Sau96I GGNCC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 3 cut(s) 20, 218, 258
SetI ASST 7 cut(s) 36, 206, 223, 229, 236, 261, 369
Sfr274I CTCGAG 1 cut(s) 211
SfuI TTCGAA 1 cut(s) 85
SinI GGWCC 1 cut(s) 145
SlaI CTCGAG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 64
SmlI CTYRAG 3 cut(s) 35, 167, 211
SmoI CTYRAG 3 cut(s) 35, 167, 211
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 52
TaqI TCGA 4 cut(s) 85, 212, 230, 336
TfiI GAWTC 1 cut(s) 172
TseFI GTSAC 1 cut(s) 314
Tsp45I GTSAC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 294, 340
TspGWI ACGGA 2 cut(s) 266, 333
VpaK11BI GGWCC 1 cut(s) 145
XhoI CTCGAG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.