RchiOBHm_Chr4g0392721

Protein of unknown function (DUF2647)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0020370
Physical Location & Seq
Forward (+)
8273247 .. 8273519
273 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36544

Sequence Viewer

Length: 273 bp
ATGGATATTTCAATGTGCTTATTAGCGCTTGACCATGGCGTACTTCTCCTGTTCGAATGGGGGTTTGAAACTAAACCTCTCCTCAGGAGGATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTCTATTCACTCATGGGATCCAGGTGGTCCAGGAGGGACCACCACGACTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGGTTTAGGTTCGACCTCAATGGGAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2647

Protein Analysis

90

Amino Acids

10.29

Weight (kDa)

5.8

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF2647 PF10839 25 - 53 4.3e-12 Protein of unknown function (DUF2647)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020370)

Species Orthologous Gene IDs
malus_domestica MD00G1140100.v1.1 MD03G1269900.v1.1
rosa_chinensis RchiOBHm_Chr2g0095251 RchiOBHm_Chr4g0392721 RchiOBHm_Chr7g0221131
rosa_samantha Rh4CG047300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 108, 119, 144, 157
AfaI GTAC 1 cut(s) 42
AfeI AGCGCT 1 cut(s) 27
AgsI TTSAA 2 cut(s) 12, 68
AjnI CCWGG 2 cut(s) 152, 161
AjuI GAANNNNNNNTTGG 2 cut(s) 121, 153
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw21I GWGCWC 1 cut(s) 242
AlwI GGATC 4 cut(s) 108, 119, 144, 157
Ama87I CYCGRG 2 cut(s) 191, 235
Aor51HI AGCGCT 1 cut(s) 27
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 159, 169
AsuHPI GGTGA 1 cut(s) 121
AsuII TTCGAA 1 cut(s) 54
AvaI CYCGRG 2 cut(s) 191, 235
AvaII GGWCC 2 cut(s) 159, 169
AxyI CCTNAGG 1 cut(s) 83
BamHI GGATCC 1 cut(s) 149
Bbv12I GWGCWC 1 cut(s) 242
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 154, 163
BfoI RGCGCY 1 cut(s) 29
Bme1390I CCNGG 2 cut(s) 154, 163
Bme18I GGWCC 2 cut(s) 159, 169
BmeT110I CYCGRG 2 cut(s) 191, 235
BmgT120I GGNCC 2 cut(s) 159, 169
BmiI GGNNCC 2 cut(s) 151, 170
BmrFI CCNGG 2 cut(s) 154, 163
Bpu14I TTCGAA 1 cut(s) 54
BsaJI CCNNGG 1 cut(s) 34
BsaXI ACNNNNNCTCC 2 cut(s) 164, 194
Bse21I CCTNAGG 1 cut(s) 83
BseBI CCWGG 2 cut(s) 154, 163
BseDI CCNNGG 1 cut(s) 34
BseGI GGATG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 97
BseRI GAGGAG 2 cut(s) 71, 172
BsiHKAI GWGCWC 1 cut(s) 242
BsiHKCI CYCGRG 2 cut(s) 191, 235
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsoBI CYCGRG 2 cut(s) 191, 235
Bsp119I TTCGAA 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 242
Bsp143I GATC 3 cut(s) 113, 124, 149
Bsp19I CCATGG 1 cut(s) 34
BspCNI CTCAG 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 151, 170
BspPI GGATC 4 cut(s) 108, 119, 144, 157
BspT104I TTCGAA 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 34
BssMI GATC 3 cut(s) 113, 124, 149
BssT1I CCWWGG 1 cut(s) 34
Bst2UI CCWGG 2 cut(s) 154, 163
Bst6I CTCTTC 1 cut(s) 192
BstBI TTCGAA 1 cut(s) 54
BstDEI CTNAG 1 cut(s) 83
BstDSI CCRYGG 1 cut(s) 34
BstF5I GGATG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 3 cut(s) 116, 127, 152
BstMBI GATC 3 cut(s) 113, 124, 149
BstNI CCWGG 2 cut(s) 154, 163
BstSCI CCNGG 2 cut(s) 152, 161
BstX2I RGATCY 3 cut(s) 113, 124, 149
BstYI RGATCY 3 cut(s) 113, 124, 149
Bsu36I CCTNAGG 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 34
BtsCI GGATG 1 cut(s) 204
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 159, 169
Csp6I GTAC 1 cut(s) 41
CviAII CATG 2 cut(s) 35, 145
CviJI RGCY 1 cut(s) 228
CviKI_1 RGCY 1 cut(s) 228
CviQI GTAC 1 cut(s) 41
DdeI CTNAG 1 cut(s) 83
DpnI GATC 3 cut(s) 115, 126, 151
DpnII GATC 3 cut(s) 113, 124, 149
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 34
Eco47I GGWCC 2 cut(s) 159, 169
Eco47III AGCGCT 1 cut(s) 27
Eco81I CCTNAGG 1 cut(s) 83
Eco88I CYCGRG 2 cut(s) 191, 235
EcoRII CCWGG 2 cut(s) 152, 161
EcoT14I CCWWGG 1 cut(s) 34
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 2 cut(s) 38, 148
FaiI YATR 5 cut(s) 36, 146, 202, 219, 221
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 34, 144
FokI GGATG 1 cut(s) 191
GlaI GCGC 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 29
HhaI GCGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 38, 148
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 3 cut(s) 103, 179, 196
HphI GGTGA 1 cut(s) 121
Hpy188III TCNNGA 4 cut(s) 85, 191, 193, 235
HpyF3I CTNAG 1 cut(s) 83
Hsp92II CATG 2 cut(s) 38, 148
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 3 cut(s) 113, 124, 149
LpnPI CCDG 8 cut(s) 62, 70, 92, 139, 148, 166, 175, 228
MalI GATC 3 cut(s) 115, 126, 151
MboI GATC 3 cut(s) 113, 124, 149
MboII GAAGA 1 cut(s) 179
MflI RGATCY 3 cut(s) 113, 124, 149
MhlI GDGCHC 1 cut(s) 242
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 6 cut(s) 81, 87, 92, 159, 193, 268
MspR9I CCNGG 2 cut(s) 154, 163
MvaI CCWGG 2 cut(s) 154, 163
NcoI CCATGG 1 cut(s) 34
NdeII GATC 3 cut(s) 113, 124, 149
NlaIII CATG 2 cut(s) 38, 148
NlaIV GGNNCC 2 cut(s) 151, 170
NspV TTCGAA 1 cut(s) 54
PaeR7I CTCGAG 2 cut(s) 191, 235
PfeI GAWTC 2 cut(s) 103, 196
PfoI TCCNGGA 1 cut(s) 161
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 152, 161
PspGI CCWGG 2 cut(s) 152, 161
PspN4I GGNNCC 2 cut(s) 151, 170
PspPI GGNCC 2 cut(s) 159, 169
PsuI RGATCY 3 cut(s) 113, 124, 149
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
Sau3AI GATC 3 cut(s) 113, 124, 149
Sau96I GGNCC 2 cut(s) 159, 169
SchI GAGTC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 154, 163
SduI GDGCHC 1 cut(s) 242
SetI ASST 7 cut(s) 79, 111, 158, 230, 247, 253, 260
Sfr274I CTCGAG 2 cut(s) 191, 235
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 2 cut(s) 159, 169
SlaI CTCGAG 2 cut(s) 191, 235
SmlI CTYRAG 2 cut(s) 191, 235
SmoI CTYRAG 2 cut(s) 191, 235
StyD4I CCNGG 2 cut(s) 152, 161
StyI CCWWGG 1 cut(s) 34
TaqI TCGA 4 cut(s) 54, 192, 236, 254
TfiI GAWTC 2 cut(s) 103, 196
VpaK11BI GGWCC 2 cut(s) 159, 169
XhoI CTCGAG 2 cut(s) 191, 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.