RchiOBHm_Chr2g0102941

LYK5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0016730
Physical Location & Seq
Reverse (-)
14551566 .. 14553440
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47734

Sequence Viewer

Length: 1875 bp
ATGGCAGTCTCCATCCTACGTTCATCAATAGTCTGTATTCTGCTACTGTTCTTCTTCACCACTCAAATTTTAGCCCAGCCAGTACCACAGTCGAACTCGACCACAAACTTTTCATGTGCAGTAGATTCACCATCTTCATGCGAAACATATATAACTTACTTTGCACGGTCTCCAGGGTATATGAACCTGGAAAACATATCTGATCTATTTGGGGTCAGTGTCTCATCAATTGCCAAGGCCAGTAATCTAGCTTCCAGTTACACAGGTCAGACCCGATTGGTTGCAGGCCAACTCTTACTAGTACCTATCACCTGTGGTTGCACTGAAAACCGGTCTTTTGCAAACATTACCTATCCGATCAAGAGTGGAGATAGCTACTATGTGGTTTCGATCAATACATTTCAGAATCTCACCAAATGGCCGTTAGTGCAAGAGATGAATCCAGCTCTGATTCCCACCCACTTGCAGATTGGTGACAAAGTGATTTTTCCTTTGTTCTGCAAATGTCCCTCGAAGACGAACTCAGATTTAATTCAGTATCTCATCACTTATGTCTGGCAGACTGATGATGACATCTTTAGAGTGGGTGCCAAGTTTAATGTTAAAGAATTTGAGATCTCAGACGCAAATAACCAGCGGGACTTCAGCAATTCAAGTGCAGTAGTGGGACAACCGGTGCTGATACCACTGACAGAGTTGCCTGCTCTATTCCAACCACTACCCCCTCATGGAAAACACAACTACCGGTTGATGCTTATTGTCATCATATGCTTGGGAGTTGCTCTATGTGTTGCTTCTCTTTTGGCAATTTTCGTGGTTTACACTCGTCGTCTGCACAAGAGACAGAAGCTTTTGAATGGTAAGAGTTTGTCTCTGGAAAGCGCTGAATGGTTCCGAATGAAAGAAGCAAAAGGTGAAGAGAAGATTGAGCTGAAGTTTGTACAGGACAAGCTTCTTCCTGGAGTTTCAAGCTATTTAGGAAAGGCAATCCTCTATGATATCAAAACAATTATGGAGGCAACCATGAATCTCAACGACCACCGTAGGATTGGAGGGTCTGTATACAGGGCTGTAATTGATGGGAAGGTCTTGGCTGTGAAGAAAACCAAGGAAGATGTCACTGAGGAACTAAATATCCTGCAGAAGGTAAATCATGCAAATCTGGTGAAACTTATGGGCATCTCATCTGAGATCGACGGGGATCGCTTCTTGGTTTATGAATATGCTGAAAATGGATCACTTGATAAATGGTTGCACTATAAATCTTCAAGCGGTTCAAGTTCTGGGGCATTCCTCACATGGAGTCAGAGATTAAGCATAGCTCTAGATGTTGCCAATGGCCTGCAATACATGCATGAACACACGCAACCGAGCATCGTTCACATGGATATAAGGACAAGTAACATACTTCTTGACTCCAAATACAAGGCCAAGATAGCAAACTTCTCCATGGCTAGAACGGCTGCAAACAGTGTTACACCAAAGGCGGATGTTTTCTCTTTCGGTGTTGTTCTGTTGTCTTTGCTTTCGGGGAAGAAAGGCATGGAAACAAAAGAGAATGGTGAGGTCATCATGTTGTGGAAGGATGTTAGGGGGGTTTTGGAAGCTGGAGAGAAAAAACAGGAGAGGTTGAGAGCATGGATGGATCCAACTTTGGAGAGTTTCTATCCCATTGATGGTGCTTTGAGCTTGACATCCTTGGCAAGCGCATGCACACAGGAAAAGTCATCAGCAAGACCAAGCATGGCTGAAGTTGTCTTCAACCTCTCTGTTCTTACTCATTCATCGTCTGAGTCGACACTGGAGAGGTCTTGGAATTCTGCATTGGAAGCAGAAGAAGTTCTTCAAACTATCACTCCTATCAGAGCTCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002237 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006486 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009605 GO:0009607 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0032101 GO:0032103 GO:0034645 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043413 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070085 GO:0071704 GO:0071944 GO:0080134 GO:0140096 GO:1900150 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902288 GO:1902290
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
LysM Pkinase Pkinase_Tyr

Protein Analysis

624

Amino Acids

69.31

Weight (kDa)

8.17

Isoelectric Point (pI)

44.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM1_NFP_LYK PF23446 46 - 108 4.6e-22 NFP/LYK LysM1 domain
LysM2_NFP PF23457 112 - 166 3.7e-26 NFP LysM2 domain
LysM2_CERK1_LYK3_4_5 PF23472 114 - 165 2.2e-07 LYK3/4/5 LysM2 domain
LysM3_NFP PF23462 180 - 229 1.5e-16 NFP LysM3 domain
Pkinase PF00069 362 - 491 2.7e-20 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 367 - 489 1e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016730)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14270
malus_domestica MD02G1156500.v1.1
prunus_persica Prupe.7G147300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0102941
rosa_laevigata RLG00000017189
rosa_multiflora Rmu_sc0000388.1_g000044
rosa_roxburghii Rroxscaffold_2G00140080 Rroxscaffold_2G00140210
rosa_rugosa Rorug02G0110500
rosa_samantha Rh2AG158800 Rh2BG165200 Rh2CG165400 Rh2DG164000
rosa_wichuraiana Rw2G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 587
AccI GTMKAC 2 cut(s) 1062, 1796
AciI CCGC 3 cut(s) 637, 1272, 1487
AclWI GGATC 4 cut(s) 1209, 1243, 1640, 1653
AcoI YGGCCR 1 cut(s) 419
AcsI RAATTY 3 cut(s) 66, 608, 1816
AcuI CTGAAG 3 cut(s) 628, 953, 1770
AfaI GTAC 3 cut(s) 84, 303, 942
AfeI AGCGCT 1 cut(s) 883
AfiI CCNNNNNNNGG 3 cut(s) 728, 1144, 1676
AgeI ACCGGT 3 cut(s) 330, 673, 744
AgsI TTSAA 7 cut(s) 654, 856, 969, 1269, 1278, 1762, 1847
AhlI ACTAGT 1 cut(s) 298
AjnI CCWGG 3 cut(s) 172, 186, 958
AjuI GAANNNNNNNTTGG 2 cut(s) 1808, 1840
AloI GAACNNNNNNTCC 2 cut(s) 1119, 1151
Alw21I GWGCWC 1 cut(s) 1870
Alw26I GTCTC 5 cut(s) 13, 174, 226, 835, 876
AlwI GGATC 4 cut(s) 1209, 1243, 1640, 1653
Aor51HI AGCGCT 1 cut(s) 883
AoxI GGCC 5 cut(s) 237, 286, 419, 1339, 1428
ApeKI GCWGC 1 cut(s) 1463
ApoI RAATTY 3 cut(s) 66, 608, 1816
AsiGI ACCGGT 3 cut(s) 330, 673, 744
Asp700I GAANNNNTTC 2 cut(s) 1839, 1842
AspLEI GCGC 2 cut(s) 884, 1709
AsuHPI GGTGA 8 cut(s) 49, 120, 301, 403, 485, 926, 1177, 1574
BamHI GGATCC 1 cut(s) 1645
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 1870
BarI GAAGNNNNNNTAC 2 cut(s) 235, 267
BbsI GAAGAC 2 cut(s) 521, 1750
Bbv12I GWGCWC 1 cut(s) 1870
BbvI GCAGC 1 cut(s) 1450
BccI CCATC 5 cut(s) 20, 139, 1073, 1636, 1670
BceAI ACGGC 2 cut(s) 406, 1476
BciT130I CCWGG 3 cut(s) 174, 188, 960
BcoDI GTCTC 5 cut(s) 13, 174, 226, 835, 876
BcuI ACTAGT 1 cut(s) 298
BfaI CTAG 4 cut(s) 248, 299, 1325, 1455
BfmI CTRYAG 1 cut(s) 1139
BfoI RGCGCY 1 cut(s) 885
BglII AGATCT 1 cut(s) 615
BisI GCNGC 1 cut(s) 1464
BlsI GCNGC 1 cut(s) 1465
Bme1390I CCNGG 3 cut(s) 174, 188, 960
BmiI GGNNCC 3 cut(s) 589, 893, 1647
BmrFI CCNGG 3 cut(s) 174, 188, 960
BmsI GCATC 3 cut(s) 741, 1188, 1383
BpiI GAAGAC 2 cut(s) 521, 1750
BplI GAGNNNNNCTC 2 cut(s) 856, 888
BpmI CTGGAG 4 cut(s) 156, 981, 1629, 1823
BsaI GGTCTC 1 cut(s) 174
BsaJI CCNNGG 5 cut(s) 173, 234, 1107, 1449, 1698
BsaWI WCCGGW 3 cut(s) 330, 673, 744
BsaXI ACNNNNNCTCC 4 cut(s) 1044, 1074, 1840, 1870
Bsc4I CCNNNNNNNGG 3 cut(s) 728, 1144, 1676
Bse118I RCCGGY 3 cut(s) 330, 673, 744
Bse1I ACTGG 4 cut(s) 80, 240, 255, 1806
BseBI CCWGG 3 cut(s) 174, 188, 960
BseDI CCNNGG 5 cut(s) 173, 234, 1107, 1449, 1698
BseGI GGATG 5 cut(s) 12, 1495, 1591, 1647, 1694
BseLI CCNNNNNNNGG 3 cut(s) 728, 1144, 1676
BseMII CTCAG 5 cut(s) 537, 633, 1113, 1179, 1782
BseNI ACTGG 4 cut(s) 80, 240, 255, 1806
BseXI GCAGC 1 cut(s) 1450
BseYI CCCAGC 1 cut(s) 75
BsgI GTGCAG 3 cut(s) 138, 678, 818
BshFI GGCC 5 cut(s) 239, 288, 421, 1341, 1430
BshNI GGYRCC 1 cut(s) 587
BshTI ACCGGT 3 cut(s) 330, 673, 744
BsiHKAI GWGCWC 1 cut(s) 1870
BsiSI CCGG 3 cut(s) 331, 674, 745
BslFI GGGAC 3 cut(s) 492, 653, 681
BslI CCNNNNNNNGG 3 cut(s) 728, 1144, 1676
BsmAI GTCTC 5 cut(s) 13, 174, 226, 835, 876
BsmFI GGGAC 3 cut(s) 492, 653, 681
BsmI GAATGC 1 cut(s) 1289
BsnI GGCC 5 cut(s) 239, 288, 421, 1341, 1430
Bso31I GGTCTC 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 1870
Bsp1407I TGTACA 1 cut(s) 940
Bsp143I GATC 8 cut(s) 202, 357, 390, 615, 1191, 1201, 1235, 1645
Bsp19I CCATGG 1 cut(s) 1449
BspACI CCGC 3 cut(s) 637, 1272, 1487
BspANI GGCC 5 cut(s) 239, 288, 421, 1341, 1430
BspCNI CTCAG 5 cut(s) 536, 632, 1114, 1180, 1783
BspLI GGNNCC 3 cut(s) 589, 893, 1647
BspMAI CTGCAG 1 cut(s) 1143
BspPI GGATC 4 cut(s) 1209, 1243, 1640, 1653
BspT107I GGYRCC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 174
BsrFI RCCGGY 3 cut(s) 330, 673, 744
BsrGI TGTACA 1 cut(s) 940
BsrI ACTGG 4 cut(s) 80, 240, 255, 1806
BssAI RCCGGY 3 cut(s) 330, 673, 744
BssECI CCNNGG 5 cut(s) 173, 234, 1107, 1449, 1698
BssMI GATC 8 cut(s) 202, 357, 390, 615, 1191, 1201, 1235, 1645
BssNAI GTATAC 1 cut(s) 1063
BssT1I CCWWGG 4 cut(s) 234, 1107, 1449, 1698
Bst1107I GTATAC 1 cut(s) 1063
Bst2UI CCWGG 3 cut(s) 174, 188, 960
Bst4CI ACNGT 5 cut(s) 48, 90, 168, 1043, 1472
Bst6I CTCTTC 1 cut(s) 912
BstAPI GCANNNNNTGC 1 cut(s) 1351
BstAUI TGTACA 1 cut(s) 940
BstC8I GCNNGC 6 cut(s) 286, 702, 1343, 1705, 1711, 1870
BstDEI CTNAG 5 cut(s) 523, 619, 1122, 1188, 1791
BstDSI CCRYGG 1 cut(s) 1449
BstENI CCTNNNNNAGG 1 cut(s) 1142
BstF5I GGATG 5 cut(s) 12, 1495, 1591, 1647, 1694
BstH2I RGCGCY 1 cut(s) 885
BstHHI GCGC 2 cut(s) 884, 1709
BstKTI GATC 8 cut(s) 205, 360, 393, 618, 1194, 1204, 1238, 1648
BstMAI GTCTC 5 cut(s) 13, 174, 226, 835, 876
BstMBI GATC 8 cut(s) 202, 357, 390, 615, 1191, 1201, 1235, 1645
BstMWI GCNNNNNNNGC 5 cut(s) 427, 1351, 1436, 1460, 1829
BstNI CCWGG 3 cut(s) 174, 188, 960
BstNSI RCATGY 2 cut(s) 1354, 1713
BstSCI CCNGG 3 cut(s) 172, 186, 958
BstSFI CTRYAG 1 cut(s) 1139
BstV1I GCAGC 1 cut(s) 1450
BstV2I GAAGAC 2 cut(s) 521, 1750
BstX2I RGATCY 2 cut(s) 615, 1645
BstYI RGATCY 2 cut(s) 615, 1645
BstZ17I GTATAC 1 cut(s) 1063
BsuRI GGCC 5 cut(s) 239, 288, 421, 1341, 1430
BtgI CCRYGG 1 cut(s) 1449
BtsCI GGATG 5 cut(s) 12, 1495, 1591, 1647, 1694
BtsIMutI CAGTG 6 cut(s) 223, 321, 686, 1119, 1477, 1799
Cac8I GCNNGC 6 cut(s) 286, 702, 1343, 1705, 1711, 1870
CfoI GCGC 2 cut(s) 884, 1709
Cfr10I RCCGGY 3 cut(s) 330, 673, 744
CseI GACGC 1 cut(s) 632
Csp6I GTAC 3 cut(s) 83, 302, 941
CspAI ACCGGT 3 cut(s) 330, 673, 744
CspCI CAANNNNNGTGG 2 cut(s) 795, 830
CviQI GTAC 3 cut(s) 83, 302, 941
DdeI CTNAG 5 cut(s) 523, 619, 1122, 1188, 1791
DpnI GATC 8 cut(s) 204, 359, 392, 617, 1193, 1203, 1237, 1647
DpnII GATC 8 cut(s) 202, 357, 390, 615, 1191, 1201, 1235, 1645
EaeI YGGCCR 1 cut(s) 419
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
EciI GGCGGA 1 cut(s) 1502
Ecl136II GAGCTC 1 cut(s) 1868
Eco130I CCWWGG 4 cut(s) 234, 1107, 1449, 1698
Eco24I GRGCYC 1 cut(s) 1870
Eco31I GGTCTC 1 cut(s) 174
Eco32I GATATC 1 cut(s) 1000
Eco47III AGCGCT 1 cut(s) 883
Eco53kI GAGCTC 1 cut(s) 1868
Eco57I CTGAAG 3 cut(s) 628, 953, 1770
EcoICRI GAGCTC 1 cut(s) 1868
EcoNI CCTNNNNNAGG 1 cut(s) 1142
EcoRI GAATTC 1 cut(s) 1816
EcoRII CCWGG 3 cut(s) 172, 186, 958
EcoRV GATATC 1 cut(s) 1000
EcoT14I CCWWGG 4 cut(s) 234, 1107, 1449, 1698
EcoT22I ATGCAT 1 cut(s) 1356
EcoT38I GRGCYC 1 cut(s) 1870
ErhI CCWWGG 4 cut(s) 234, 1107, 1449, 1698
FalI AAGNNNNNCTT 2 cut(s) 1827, 1859
FaqI GGGAC 3 cut(s) 492, 653, 681
FauI CCCGC 1 cut(s) 630
FauNDI CATATG 1 cut(s) 767
FblI GTMKAC 2 cut(s) 1062, 1796
Fnu4HI GCNGC 1 cut(s) 1464
FokI GGATG 4 cut(s) 1502, 1598, 1654, 1681
FriOI GRGCYC 1 cut(s) 1870
Fsp4HI GCNGC 1 cut(s) 1464
FspBI CTAG 4 cut(s) 248, 299, 1325, 1455
GlaI GCGC 2 cut(s) 883, 1708
GluI GCNGC 1 cut(s) 1464
GsaI CCCAGC 1 cut(s) 79
GsuI CTGGAG 4 cut(s) 156, 981, 1629, 1823
HaeII RGCGCY 1 cut(s) 885
HaeIII GGCC 5 cut(s) 239, 288, 421, 1341, 1430
HapII CCGG 3 cut(s) 331, 674, 745
HgaI GACGC 1 cut(s) 632
HhaI GCGC 2 cut(s) 884, 1709
Hin6I GCGC 2 cut(s) 882, 1707
HinP1I GCGC 2 cut(s) 882, 1707
HincII GTYRAC 1 cut(s) 1797
HindII GTYRAC 1 cut(s) 1797
HindIII AAGCTT 2 cut(s) 848, 950
HinfI GANTC 8 cut(s) 125, 406, 439, 451, 1027, 1303, 1415, 1793
HpaII CCGG 3 cut(s) 331, 674, 745
HphI GGTGA 8 cut(s) 49, 120, 301, 403, 485, 926, 1177, 1574
Hpy166II GTNNAC 4 cut(s) 820, 1063, 1381, 1797
Hpy188III TCNNGA 4 cut(s) 361, 875, 1325, 1412
Hpy8I GTNNAC 4 cut(s) 820, 1063, 1381, 1797
Hpy99I CGWCG 2 cut(s) 831, 1199
HpyAV CCTTC 3 cut(s) 1078, 1138, 1576
HpyCH4III ACNGT 5 cut(s) 48, 90, 168, 1043, 1472
HpyCH4IV ACGT 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 5 cut(s) 427, 1351, 1436, 1460, 1829
HpyF3I CTNAG 5 cut(s) 523, 619, 1122, 1188, 1791
HpySE526I ACGT 1 cut(s) 19
HspAI GCGC 2 cut(s) 882, 1707
Kzo9I GATC 8 cut(s) 202, 357, 390, 615, 1191, 1201, 1235, 1645
Lsp1109I GCAGC 1 cut(s) 1450
LweI GCATC 3 cut(s) 741, 1188, 1383
MaeI CTAG 4 cut(s) 248, 299, 1325, 1455
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 5 cut(s) 257, 473, 1117, 1400, 1474
MalI GATC 8 cut(s) 204, 359, 392, 617, 1193, 1203, 1237, 1647
MboI GATC 8 cut(s) 202, 357, 390, 615, 1191, 1201, 1235, 1645
MfeI CAATTG 1 cut(s) 228
MflI RGATCY 2 cut(s) 615, 1645
MhlI GDGCHC 1 cut(s) 1870
MluCI AATT 9 cut(s) 66, 228, 531, 608, 649, 807, 1008, 1074, 1816
MlyI GAGTC 3 cut(s) 1312, 1409, 1802
MmeI TCCRAC 2 cut(s) 736, 1673
Mph1103I ATGCAT 1 cut(s) 1356
MroXI GAANNNNTTC 2 cut(s) 1839, 1842
MseI TTAA 4 cut(s) 530, 597, 603, 1313
MslI CAYNNNNRTG 1 cut(s) 136
MspA1I CMGCKG 1 cut(s) 637
MspI CCGG 3 cut(s) 331, 674, 745
MspR9I CCNGG 3 cut(s) 174, 188, 960
MunI CAATTG 1 cut(s) 228
Mva1269I GAATGC 1 cut(s) 1289
MvaI CCWGG 3 cut(s) 174, 188, 960
MwoI GCNNNNNNNGC 5 cut(s) 427, 1351, 1436, 1460, 1829
NcoI CCATGG 1 cut(s) 1449
NdeI CATATG 1 cut(s) 767
NdeII GATC 8 cut(s) 202, 357, 390, 615, 1191, 1201, 1235, 1645
NlaIV GGNNCC 3 cut(s) 589, 893, 1647
NmuCI GTSAC 2 cut(s) 473, 1117
NsiI ATGCAT 1 cut(s) 1356
NspI RCATGY 2 cut(s) 1354, 1713
PaeI GCATGC 1 cut(s) 1713
PcsI WCGNNNNNNNCGW 1 cut(s) 1793
PctI GAATGC 1 cut(s) 1289
PdmI GAANNNNTTC 2 cut(s) 1839, 1842
PfeI GAWTC 5 cut(s) 125, 406, 439, 451, 1027
PfoI TCCNGGA 1 cut(s) 958
PinAI ACCGGT 3 cut(s) 330, 673, 744
PkrI GCNGC 1 cut(s) 1465
PleI GAGTC 3 cut(s) 1311, 1409, 1801
PpsI GAGTC 3 cut(s) 1311, 1409, 1801
Psp124BI GAGCTC 1 cut(s) 1870
Psp6I CCWGG 3 cut(s) 172, 186, 958
PspFI CCCAGC 1 cut(s) 75
PspGI CCWGG 3 cut(s) 172, 186, 958
PspN4I GGNNCC 3 cut(s) 589, 893, 1647
PstI CTGCAG 1 cut(s) 1143
PsuI RGATCY 2 cut(s) 615, 1645
RsaI GTAC 3 cut(s) 84, 303, 942
RsaNI GTAC 3 cut(s) 83, 302, 941
RseI CAYNNNNRTG 1 cut(s) 136
SacI GAGCTC 1 cut(s) 1870
SalI GTCGAC 1 cut(s) 1795
SaqAI TTAA 4 cut(s) 530, 597, 603, 1313
SatI GCNGC 1 cut(s) 1464
Sau3AI GATC 8 cut(s) 202, 357, 390, 615, 1191, 1201, 1235, 1645
SchI GAGTC 3 cut(s) 1312, 1409, 1802
ScrFI CCNGG 3 cut(s) 174, 188, 960
SduI GDGCHC 1 cut(s) 1870
SfaNI GCATC 3 cut(s) 741, 1188, 1383
SfcI CTRYAG 1 cut(s) 1139
SmiMI CAYNNNNRTG 1 cut(s) 136
SpeI ACTAGT 1 cut(s) 298
SphI GCATGC 1 cut(s) 1713
Sse9I AATT 9 cut(s) 66, 228, 531, 608, 649, 807, 1008, 1074, 1816
SsiI CCGC 3 cut(s) 637, 1272, 1487
SspMI CTAG 4 cut(s) 248, 299, 1325, 1455
SstI GAGCTC 1 cut(s) 1870
StyD4I CCNGG 3 cut(s) 172, 186, 958
StyI CCWWGG 4 cut(s) 234, 1107, 1449, 1698
TaaI ACNGT 5 cut(s) 48, 90, 168, 1043, 1472
TaiI ACGT 1 cut(s) 22
TaqI TCGA 6 cut(s) 92, 98, 389, 512, 1194, 1796
TasI AATT 9 cut(s) 66, 228, 531, 608, 649, 807, 1008, 1074, 1816
TatI WGTACW 1 cut(s) 940
TfiI GAWTC 5 cut(s) 125, 406, 439, 451, 1027
Tru1I TTAA 4 cut(s) 530, 597, 603, 1313
Tru9I TTAA 4 cut(s) 530, 597, 603, 1313
TscAI CASTG 6 cut(s) 223, 328, 693, 1126, 1477, 1806
TseFI GTSAC 2 cut(s) 473, 1117
TseI GCWGC 1 cut(s) 1463
Tsp45I GTSAC 2 cut(s) 473, 1117
TspRI CASTG 6 cut(s) 223, 328, 693, 1126, 1477, 1806
XagI CCTNNNNNAGG 1 cut(s) 1142
XapI RAATTY 3 cut(s) 66, 608, 1816
XbaI TCTAGA 1 cut(s) 1324
XceI RCATGY 2 cut(s) 1354, 1713
XcmI CCANNNNNNNNNTGG 2 cut(s) 467, 1046
XmiI GTMKAC 2 cut(s) 1062, 1796
XmnI GAANNNNTTC 2 cut(s) 1839, 1842
XspI CTAG 4 cut(s) 248, 299, 1325, 1455
Zsp2I ATGCAT 1 cut(s) 1356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.