Rorug02G0110500

LYK5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016730
Physical Location & Seq
Reverse (-)
9472851 .. 9474882
2032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0110500.1

Sequence Viewer

Length: 450 bp
ATGAAAGGTGGGAAATCCAGAGCCGCGGCTCCGAAACGGTCCGATACAAAGTTAAAGACCAAAAGCGCTGGGGCGAGCAAGCCAGCCAAGAAGGCTGGGAAAGATCCAAACAAGCCCAAGAGGCCTGCGAGTGCCTTCTTCGTTTTCATGGAGGAGTTCCGAGAGAAGTACAAGAAGGAACATCCCAACAACAAATCTGTCGCCGCTGTTGGTAAAGCTGGTGGTGAGAAATGGAAATCGTTGTCTGATGCTGAGAAAGCACCCTACCAGGCCAAGGCAGAGAAGAGGAAGGTTGAATACAACAAGAACATGGACGTTTACAACAAGAAACAAGCTGAAGGAGACAATGGAGTTGAGGAAGAGGAGTCTGACAAGTCCAAGTCAGAAGTGAACGATGAGGATGAGGACGATGATGAGAGTGGTGGCGAGGATGAAGATGATGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002237 GO:0002831 GO:0002833 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006486 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009605 GO:0009607 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0031974 GO:0032101 GO:0032103 GO:0034645 GO:0036211 GO:0038023 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043413 GO:0043900 GO:0043902 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070085 GO:0071704 GO:0071944 GO:0080134 GO:0140096 GO:1900150 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902288 GO:1902290
KEGG Pathways
Metabolic & Signaling
ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164
Pfam Domains
Protein Families
LysM Pkinase Pkinase_Tyr

Protein Analysis

149

Amino Acids

16.51

Weight (kDa)

5.73

Isoelectric Point (pI)

44.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG_box_2 PF09011 36 - 108 6.1e-15 HMG-box domain
HMG_box PF00505 39 - 108 7.2e-24 HMG (high mobility group) box
HMG_WDHD1 PF24815 42 - 92 5.8e-11 WDHD1 HMG box
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016730)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g14270
malus_domestica MD02G1156500.v1.1
prunus_persica Prupe.7G147300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0102941
rosa_laevigata RLG00000017189
rosa_multiflora Rmu_sc0000388.1_g000044
rosa_roxburghii Rroxscaffold_2G00140080 Rroxscaffold_2G00140210
rosa_rugosa Rorug02G0110500
rosa_samantha Rh2AG158800 Rh2BG165200 Rh2CG165400 Rh2DG164000
rosa_wichuraiana Rw2G012410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 26
AciI CCGC 3 cut(s) 24, 26, 204
AclWI GGATC 1 cut(s) 98
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 274
AgsI TTSAA 1 cut(s) 296
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 2 cut(s) 218, 335
AluI AGCT 2 cut(s) 218, 335
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 1 cut(s) 98
Aor51HI AGCGCT 1 cut(s) 67
AoxI GGCC 2 cut(s) 122, 270
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 1 cut(s) 236
AvaII GGWCC 1 cut(s) 39
BarI GAAGNNNNNNTAC 2 cut(s) 281, 313
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 336
BfoI RGCGCY 1 cut(s) 69
BglI GCCNNNNNGGC 2 cut(s) 92, 121
BisI GCNGC 3 cut(s) 24, 27, 204
BlsI GCNGC 3 cut(s) 25, 28, 205
Bme1390I CCNGG 1 cut(s) 269
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 238
BsaJI CCNNGG 2 cut(s) 24, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 274
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 24, 273
BseGI GGATG 3 cut(s) 181, 406, 436
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 243
BseRI GAGGAG 2 cut(s) 167, 377
BseYI CCCAGC 2 cut(s) 68, 95
Bsh1236I CGCG 1 cut(s) 26
BshFI GGCC 2 cut(s) 124, 272
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 1 cut(s) 336
BsnI GGCC 2 cut(s) 124, 272
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 3 cut(s) 24, 26, 204
BspANI GGCC 2 cut(s) 124, 272
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 1 cut(s) 26
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 24, 273
BssMI GATC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 278, 354
BstC8I GCNNGC 4 cut(s) 76, 80, 84, 126
BstDEI CTNAG 1 cut(s) 252
BstDSI CCRYGG 1 cut(s) 24
BstF5I GGATG 3 cut(s) 181, 406, 436
BstFNI CGCG 1 cut(s) 26
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 3 cut(s) 92, 121, 257
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstUI CGCG 1 cut(s) 26
BstX2I RGATCY 1 cut(s) 103
BstYI RGATCY 1 cut(s) 103
BsuRI GGCC 2 cut(s) 124, 272
BtgI CCRYGG 1 cut(s) 24
BtsCI GGATG 3 cut(s) 181, 406, 436
Cac8I GCNNGC 4 cut(s) 76, 80, 84, 126
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 39
Cfr42I CCGCGG 1 cut(s) 27
CpoI CGGWCCG 1 cut(s) 39
Csp6I GTAC 1 cut(s) 169
CspI CGGWCCG 1 cut(s) 39
CviAII CATG 2 cut(s) 148, 310
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 2 cut(s) 278, 354
EarI CTCTTC 2 cut(s) 278, 354
Eco130I CCWWGG 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 39
Eco47III AGCGCT 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 357
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 151, 313
FaiI YATR 2 cut(s) 149, 311
FatI CATG 2 cut(s) 147, 309
Fnu4HI GCNGC 3 cut(s) 24, 27, 204
FokI GGATG 3 cut(s) 168, 413, 443
Fsp4HI GCNGC 3 cut(s) 24, 27, 204
GlaI GCGC 1 cut(s) 67
GluI GCNGC 3 cut(s) 24, 27, 204
GsaI CCCAGC 2 cut(s) 72, 99
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 124, 272
HhaI GCGC 1 cut(s) 68
Hin1II CATG 2 cut(s) 151, 313
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HinfI GANTC 1 cut(s) 365
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 2 cut(s) 319, 391
Hpy188I TCNGA 6 cut(s) 33, 43, 161, 247, 370, 385
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 2 cut(s) 319, 391
HpyAV CCTTC 5 cut(s) 85, 145, 169, 283, 332
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 121, 257
HpyF3I CTNAG 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 2 cut(s) 151, 313
HspAI GCGC 1 cut(s) 66
KspI CCGCGG 1 cut(s) 27
Kzo9I GATC 1 cut(s) 103
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 8 cut(s) 31, 54, 81, 96, 138, 204, 254, 281
LweI GCATC 1 cut(s) 238
MaeII ACGT 1 cut(s) 315
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 4 cut(s) 130, 295, 371, 446
MflI RGATCY 1 cut(s) 103
MlyI GAGTC 1 cut(s) 374
MnlI CCTC 8 cut(s) 114, 145, 279, 349, 355, 391, 397, 421
MseI TTAA 1 cut(s) 53
MspA1I CMGCKG 2 cut(s) 26, 206
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 26
MwoI GCNNNNNNNGC 3 cut(s) 92, 121, 257
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 151, 313
NlaIV GGNNCC 1 cut(s) 30
PceI AGGCCT 1 cut(s) 124
PkrI GCNGC 3 cut(s) 25, 28, 205
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp6I CCWGG 1 cut(s) 267
PspFI CCCAGC 2 cut(s) 68, 95
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 39
PsuI RGATCY 1 cut(s) 103
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
Rsr2I CGGWCCG 1 cut(s) 39
RsrII CGGWCCG 1 cut(s) 39
SacII CCGCGG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 3 cut(s) 24, 27, 204
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 374
ScrFI CCNGG 1 cut(s) 269
SetI ASST 5 cut(s) 10, 220, 294, 318, 337
SfaNI GCATC 1 cut(s) 238
Sfr303I CCGCGG 1 cut(s) 27
SgrBI CCGCGG 1 cut(s) 27
SinI GGWCC 1 cut(s) 39
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 3 cut(s) 24, 26, 204
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 318
TatI WGTACW 1 cut(s) 168
TauI GCSGC 3 cut(s) 26, 29, 206
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 17, 136, 447
VpaK11BI GGWCC 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.