RchiOBHm_Chr2g0105231

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019875
Physical Location & Seq
Reverse (-)
16570192 .. 16570725
534 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47945

Sequence Viewer

Length: 534 bp
ATGACGGCGCAAACTAGATCGTTTGCAGACTCTGACGTCGGCGGGGGTTGGCAGGTGGGATCGGATTCCATCTGTCCTCGAGCGGCGCGCAGACTCTTTGGTGGTTGTTTGAATTTTGGGTGGCGGGATCGGCGGTCTCTGAGCGGTGAAGACCCAGTGGCAGCTTCGCTAGGTTCCTCTGATCTTCGATCGGATTCGTTTGCTTCTGTTGGGTTCGGGCAGCTTTGCTTGGATCAGGGATGGGGTGGCACGTCTTGCCGGTGTGGGGATAATGGAAGGTTGGAGGGTCAGACTGCCCTTCCATGGCGTCAAGGGAGCAGCAGTGGAGCTATCAGCGGCAGGACGAGAGGGCTGCATCATGCCTTCTGCAGTTCTCTTTTTAGGCTTGGGCTTGGTGGCATATGGGCCTGGGCTATGGCTCTAGGCCTAATTTATTTTTCAGTTTATTTATCTATTTTAATTTATTGTTTTACACTTTTCGTTCGACGTGGCTTTATGCCGGTAATAAGTCCTTACCATTTTTTGGTAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.08

Weight (kDa)

9.03

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019875)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0105231
rosa_multiflora Rmu_sc0004528.1_g000008
rosa_roxburghii Rroxscaffold_2G00131210 Rroxscaffold_4G00315670 Rroxscaffold_6G00404010
rosa_samantha Rh2DG563800
rosa_wichuraiana Rw2G018290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
AasI GACNNNNNNGTC 1 cut(s) 35
AatII GACGTC 1 cut(s) 39
Acc36I ACCTGC 1 cut(s) 43
AccB7I CCANNNNNTGG 1 cut(s) 523
AccBSI CCGCTC 2 cut(s) 83, 144
AccII CGCG 1 cut(s) 88
AciI CCGC 6 cut(s) 42, 83, 124, 133, 144, 336
AclWI GGATC 3 cut(s) 67, 135, 240
AcsI RAATTY 1 cut(s) 112
AcyI GRCGYC 2 cut(s) 36, 307
AfiI CCNNNNNNNGG 3 cut(s) 265, 303, 523
AgsI TTSAA 1 cut(s) 112
AjiI CACGTC 2 cut(s) 252, 488
AjnI CCWGG 1 cut(s) 407
AluBI AGCT 3 cut(s) 164, 223, 329
AluI AGCT 3 cut(s) 164, 223, 329
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 3 cut(s) 67, 135, 240
AlwNI CAGNNNCTG 1 cut(s) 32
Ama87I CYCGRG 1 cut(s) 78
AoxI GGCC 2 cut(s) 405, 424
ApeKI GCWGC 4 cut(s) 161, 220, 318, 352
ApoI RAATTY 1 cut(s) 112
AspLEI GCGC 3 cut(s) 10, 88, 90
AspS9I GGNCC 1 cut(s) 405
AsuHPI GGTGA 1 cut(s) 158
AvaI CYCGRG 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 4 cut(s) 173, 232, 330, 339
BccI CCATC 2 cut(s) 77, 234
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 1 cut(s) 409
BcoDI GTCTC 1 cut(s) 141
BfaI CTAG 3 cut(s) 15, 170, 422
BfmI CTRYAG 1 cut(s) 367
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 6 cut(s) 84, 162, 221, 319, 337, 353
BlsI GCNGC 6 cut(s) 85, 163, 222, 320, 338, 354
Bme1390I CCNGG 1 cut(s) 409
BmeT110I CYCGRG 1 cut(s) 78
BmgBI CACGTC 2 cut(s) 252, 488
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 409
BmrI ACTGGG 1 cut(s) 149
BmsI GCATC 1 cut(s) 364
BmuI ACTGGG 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 156
BsaHI GRCGYC 2 cut(s) 36, 307
BsaI GGTCTC 1 cut(s) 141
BsaJI CCNNGG 2 cut(s) 302, 408
BsaXI ACNNNNNCTCC 2 cut(s) 307, 337
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 303, 523
Bse118I RCCGGY 2 cut(s) 258, 499
Bse1I ACTGG 1 cut(s) 155
BseBI CCWGG 1 cut(s) 409
BseDI CCNNGG 2 cut(s) 302, 408
BseGI GGATG 1 cut(s) 245
BseLI CCNNNNNNNGG 3 cut(s) 265, 303, 523
BseMII CTCAG 1 cut(s) 131
BseNI ACTGG 1 cut(s) 155
BsePI GCGCGC 1 cut(s) 86
BseXI GCAGC 4 cut(s) 173, 232, 330, 339
Bsh1236I CGCG 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 191
BshFI GGCC 2 cut(s) 407, 426
BsiEI CGRYCG 1 cut(s) 191
BsiHKCI CYCGRG 1 cut(s) 78
BsiSI CCGG 2 cut(s) 259, 500
BslI CCNNNNNNNGG 3 cut(s) 265, 303, 523
BsmAI GTCTC 1 cut(s) 141
BsnI GGCC 2 cut(s) 407, 426
Bso31I GGTCTC 1 cut(s) 141
BsoBI CYCGRG 1 cut(s) 78
Bsp143I GATC 6 cut(s) 17, 59, 127, 181, 188, 232
Bsp19I CCATGG 1 cut(s) 302
BspACI CCGC 6 cut(s) 42, 83, 124, 133, 144, 336
BspANI GGCC 2 cut(s) 407, 426
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 175
BspMAI CTGCAG 1 cut(s) 371
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 3 cut(s) 67, 135, 240
BspTNI GGTCTC 1 cut(s) 141
BsrBI CCGCTC 2 cut(s) 83, 144
BsrFI RCCGGY 2 cut(s) 258, 499
BsrI ACTGG 1 cut(s) 155
BssAI RCCGGY 2 cut(s) 258, 499
BssECI CCNNGG 2 cut(s) 302, 408
BssHII GCGCGC 1 cut(s) 86
BssMI GATC 6 cut(s) 17, 59, 127, 181, 188, 232
BssNI GRCGYC 2 cut(s) 36, 307
BssT1I CCWWGG 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 409
BstACI GRCGYC 2 cut(s) 36, 307
BstAPI GCANNNNNTGC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 140
BstDSI CCRYGG 1 cut(s) 302
BstF5I GGATG 1 cut(s) 245
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 3 cut(s) 10, 88, 90
BstKTI GATC 6 cut(s) 20, 62, 130, 184, 191, 235
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 6 cut(s) 17, 59, 127, 181, 188, 232
BstMCI CGRYCG 1 cut(s) 191
BstMWI GCNNNNNNNGC 2 cut(s) 130, 255
BstNI CCWGG 1 cut(s) 409
BstSCI CCNGG 1 cut(s) 407
BstSFI CTRYAG 1 cut(s) 367
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 4 cut(s) 173, 232, 330, 339
BstV2I GAAGAC 1 cut(s) 156
BsuRI GGCC 2 cut(s) 407, 426
BtgI CCRYGG 1 cut(s) 302
BtrI CACGTC 2 cut(s) 252, 488
BtsCI GGATG 1 cut(s) 245
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 162, 328
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 3 cut(s) 10, 88, 90
Cfr10I RCCGGY 2 cut(s) 258, 499
Cfr13I GGNCC 1 cut(s) 405
CseI GACGC 1 cut(s) 296
CviAII CATG 2 cut(s) 303, 359
DdeI CTNAG 1 cut(s) 140
DpnI GATC 6 cut(s) 19, 61, 129, 183, 190, 234
DpnII GATC 6 cut(s) 17, 59, 127, 181, 188, 232
DrdI GACNNNNNNGTC 1 cut(s) 35
DseDI GACNNNNNNGTC 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 302
Eco147I AGGCCT 1 cut(s) 426
Eco31I GGTCTC 1 cut(s) 141
Eco88I CYCGRG 1 cut(s) 78
EcoRII CCWGG 1 cut(s) 407
EcoT14I CCWWGG 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 2 cut(s) 306, 362
FaiI YATR 6 cut(s) 304, 360, 401, 403, 416, 497
FatI CATG 2 cut(s) 302, 358
FauI CCCGC 2 cut(s) 35, 117
FauNDI CATATG 1 cut(s) 401
Fnu4HI GCNGC 6 cut(s) 84, 162, 221, 319, 337, 353
FokI GGATG 1 cut(s) 252
Fsp4HI GCNGC 6 cut(s) 84, 162, 221, 319, 337, 353
FspBI CTAG 3 cut(s) 15, 170, 422
GlaI GCGC 3 cut(s) 9, 87, 89
GluI GCNGC 6 cut(s) 84, 162, 221, 319, 337, 353
HaeIII GGCC 2 cut(s) 407, 426
HapII CCGG 2 cut(s) 259, 500
HgaI GACGC 1 cut(s) 296
HhaI GCGC 3 cut(s) 10, 88, 90
Hin1I GRCGYC 2 cut(s) 36, 307
Hin1II CATG 2 cut(s) 306, 362
Hin6I GCGC 3 cut(s) 8, 86, 88
HinP1I GCGC 3 cut(s) 8, 86, 88
HinfI GANTC 4 cut(s) 29, 65, 93, 194
HpaII CCGG 2 cut(s) 259, 500
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 6 cut(s) 34, 64, 141, 181, 193, 291
Hpy99I CGWCG 2 cut(s) 41, 489
HpyAV CCTTC 3 cut(s) 270, 308, 373
HpyCH4IV ACGT 3 cut(s) 36, 251, 487
HpyCH4V TGCA 3 cut(s) 26, 355, 369
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 255
HpyF3I CTNAG 1 cut(s) 140
HpySE526I ACGT 3 cut(s) 36, 251, 487
Hsp92I GRCGYC 2 cut(s) 36, 307
Hsp92II CATG 2 cut(s) 306, 362
HspAI GCGC 3 cut(s) 8, 86, 88
Kzo9I GATC 6 cut(s) 17, 59, 127, 181, 188, 232
LmnI GCTCC 2 cut(s) 315, 326
LpnPI CCDG 8 cut(s) 38, 168, 221, 272, 325, 394, 421, 513
Lsp1109I GCAGC 4 cut(s) 173, 232, 330, 339
LweI GCATC 1 cut(s) 364
MaeI CTAG 3 cut(s) 15, 170, 422
MaeII ACGT 3 cut(s) 36, 251, 487
MalI GATC 6 cut(s) 19, 61, 129, 183, 190, 234
MbiI CCGCTC 2 cut(s) 83, 144
MboI GATC 6 cut(s) 17, 59, 127, 181, 188, 232
MboII GAAGA 2 cut(s) 161, 176
MluCI AATT 3 cut(s) 112, 429, 459
MlyI GAGTC 2 cut(s) 23, 87
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 4 cut(s) 87, 187, 277, 341
MseI TTAA 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 2 cut(s) 259, 500
MspR9I CCNGG 1 cut(s) 409
MvaI CCWGG 1 cut(s) 409
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 2 cut(s) 130, 255
NcoI CCATGG 1 cut(s) 302
NdeI CATATG 1 cut(s) 401
NdeII GATC 6 cut(s) 17, 59, 127, 181, 188, 232
NlaIII CATG 2 cut(s) 306, 362
NlaIV GGNNCC 1 cut(s) 175
PaeR7I CTCGAG 1 cut(s) 78
PaqCI CACCTGC 1 cut(s) 43
PauI GCGCGC 1 cut(s) 86
PceI AGGCCT 1 cut(s) 426
PfeI GAWTC 2 cut(s) 65, 194
PflMI CCANNNNNTGG 1 cut(s) 523
PkrI GCNGC 6 cut(s) 85, 163, 222, 320, 338, 354
Ple19I CGATCG 1 cut(s) 191
PleI GAGTC 2 cut(s) 23, 87
PpsI GAGTC 2 cut(s) 23, 87
Psp6I CCWGG 1 cut(s) 407
PspGI CCWGG 1 cut(s) 407
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 1 cut(s) 405
PspXI VCTCGAGB 1 cut(s) 78
PstI CTGCAG 1 cut(s) 371
PstNI CAGNNNCTG 1 cut(s) 32
PteI GCGCGC 1 cut(s) 86
PvuI CGATCG 1 cut(s) 191
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 6 cut(s) 84, 162, 221, 319, 337, 353
Sau3AI GATC 6 cut(s) 17, 59, 127, 181, 188, 232
Sau96I GGNCC 1 cut(s) 405
SchI GAGTC 2 cut(s) 23, 87
ScrFI CCNGG 1 cut(s) 409
SetI ASST 9 cut(s) 39, 57, 166, 175, 225, 254, 281, 331, 490
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 367
Sfr274I CTCGAG 1 cut(s) 78
SlaI CTCGAG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
Sse9I AATT 3 cut(s) 112, 429, 459
SseBI AGGCCT 1 cut(s) 426
SsiI CCGC 6 cut(s) 42, 83, 124, 133, 144, 336
SspMI CTAG 3 cut(s) 15, 170, 422
StuI AGGCCT 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 407
StyI CCWWGG 1 cut(s) 302
TaiI ACGT 3 cut(s) 39, 254, 490
TaqI TCGA 3 cut(s) 79, 187, 484
TasI AATT 3 cut(s) 112, 429, 459
TauI GCSGC 2 cut(s) 86, 339
TfiI GAWTC 2 cut(s) 65, 194
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TscAI CASTG 2 cut(s) 162, 328
TseI GCWGC 4 cut(s) 161, 220, 318, 352
TspRI CASTG 2 cut(s) 162, 328
Van91I CCANNNNNTGG 1 cut(s) 523
XapI RAATTY 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 78
XspI CTAG 3 cut(s) 15, 170, 422
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.