Rh2DG563800

2-alkenal reductase (NADP( )-dependent)-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0019875
Physical Location & Seq
Reverse (-)
79296233 .. 79296508
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG563800.1

Sequence Viewer

Length: 276 bp
ATGGGTGAGATTAGTGAAGAAATGAGGACGACAGAAGTGGAAAGCAGAGAGTGGTACATGGCTGCTTATGCACCTGAAAGTGCTCCGACCTCCGGTCATCTCAAACTCCGCACAATCAAAATCTCACTTGCGTACGATTCGATCCCTGACCAACATGTTGTCCTCGAGACCCTCTTCCTCTCCCTTGATCCGTACTTGCGAAGCAGGATGACTGGCCGAGAAGACGGCCTCTGCTCTCCCCAGTACAACCTCAACGAGTTTATAGTTAATTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ADH_N_2 ADH_zinc_N

Protein Analysis

91

Amino Acids

10.48

Weight (kDa)

4.74

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N_2 PF16884 17 - 77 3.1e-06 N-terminal domain of oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019875)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0105231
rosa_multiflora Rmu_sc0004528.1_g000008
rosa_roxburghii Rroxscaffold_2G00131210 Rroxscaffold_4G00315670 Rroxscaffold_6G00404010
rosa_samantha Rh2DG563800
rosa_wichuraiana Rw2G018290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 109
AclWI GGATC 2 cut(s) 136, 182
AcoI YGGCCR 1 cut(s) 214
AfaI GTAC 4 cut(s) 56, 134, 194, 245
AfiI CCNNNNNNNGG 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 154
AhdI GACNNNNNGTC 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 161
AlwI GGATC 2 cut(s) 136, 182
Ama87I CYCGRG 1 cut(s) 164
AoxI GGCC 2 cut(s) 214, 226
ApeKI GCWGC 1 cut(s) 62
AsuHPI GGTGA 1 cut(s) 17
AvaI CYCGRG 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 1 cut(s) 49
BceAI ACGGC 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 161
BfaI CTAG 1 cut(s) 274
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
BmeRI GACNNNNNGTC 1 cut(s) 93
BmeT110I CYCGRG 1 cut(s) 164
BmrI ACTGGG 1 cut(s) 235
BmuI ACTGGG 1 cut(s) 235
BpiI GAAGAC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 92
Bse1I ACTGG 2 cut(s) 217, 241
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 217, 241
BseXI GCAGC 1 cut(s) 49
BshFI GGCC 2 cut(s) 216, 228
BsiHKAI GWGCWC 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 1 cut(s) 93
BsiWI CGTACG 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 92
BsmAI GTCTC 1 cut(s) 161
BsnI GGCC 2 cut(s) 216, 228
Bso31I GGTCTC 1 cut(s) 161
BsoBI CYCGRG 1 cut(s) 164
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 2 cut(s) 141, 187
BspACI CCGC 1 cut(s) 109
BspANI GGCC 2 cut(s) 216, 228
BspPI GGATC 2 cut(s) 136, 182
BspTNI GGTCTC 1 cut(s) 161
BsrI ACTGG 2 cut(s) 217, 241
BssMI GATC 2 cut(s) 141, 187
Bst6I CTCTTC 1 cut(s) 179
BstF5I GGATG 1 cut(s) 213
BstKTI GATC 2 cut(s) 144, 190
BstMAI GTCTC 1 cut(s) 161
BstMBI GATC 2 cut(s) 141, 187
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNSI RCATGY 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 228
BsuRI GGCC 2 cut(s) 216, 228
BtsCI GGATG 1 cut(s) 213
Csp6I GTAC 4 cut(s) 55, 133, 193, 244
CviAII CATG 2 cut(s) 58, 155
CviJI RGCY 3 cut(s) 62, 216, 228
CviKI_1 RGCY 3 cut(s) 62, 216, 228
CviQI GTAC 4 cut(s) 55, 133, 193, 244
DpnI GATC 2 cut(s) 143, 189
DpnII GATC 2 cut(s) 141, 187
DriI GACNNNNNGTC 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 179
Eam1105I GACNNNNNGTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 179
Eco31I GGTCTC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 164
FaeI CATG 2 cut(s) 61, 158
FaiI YATR 4 cut(s) 59, 69, 156, 263
FatI CATG 2 cut(s) 57, 154
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 1 cut(s) 274
GluI GCNGC 1 cut(s) 63
HaeIII GGCC 2 cut(s) 216, 228
HapII CCGG 1 cut(s) 93
Hin1II CATG 2 cut(s) 61, 158
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 93
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 1 cut(s) 87
Hpy188III TCNNGA 1 cut(s) 166
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
Hsp92II CATG 2 cut(s) 61, 158
Kzo9I GATC 2 cut(s) 141, 187
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 6 cut(s) 87, 106, 159, 190, 198, 254
Lsp1109I GCAGC 1 cut(s) 49
MaeI CTAG 1 cut(s) 274
MalI GATC 2 cut(s) 143, 189
MboI GATC 2 cut(s) 141, 187
MboII GAAGA 3 cut(s) 29, 166, 233
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 1 cut(s) 268
MmeI TCCRAC 1 cut(s) 110
MnlI CCTC 7 cut(s) 18, 100, 173, 182, 188, 239, 260
MseI TTAA 1 cut(s) 267
MspI CCGG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 2 cut(s) 141, 187
NlaIII CATG 2 cut(s) 61, 158
NmeAIII GCCGAG 1 cut(s) 242
NspI RCATGY 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 164
PciI ACATGT 1 cut(s) 154
PfeI GAWTC 1 cut(s) 137
Pfl23II CGTACG 1 cut(s) 132
PkrI GCNGC 1 cut(s) 64
PscI ACATGT 1 cut(s) 154
PspLI CGTACG 1 cut(s) 132
RsaI GTAC 4 cut(s) 56, 134, 194, 245
RsaNI GTAC 4 cut(s) 55, 133, 193, 244
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 141, 187
SduI GDGCHC 1 cut(s) 85
SetI ASST 3 cut(s) 76, 92, 252
Sfr274I CTCGAG 1 cut(s) 164
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 268
SsiI CCGC 1 cut(s) 109
SspMI CTAG 1 cut(s) 274
TaqI TCGA 2 cut(s) 140, 165
TasI AATT 1 cut(s) 268
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseI GCWGC 1 cut(s) 62
TspGWI ACGGA 1 cut(s) 180
XceI RCATGY 1 cut(s) 158
XhoI CTCGAG 1 cut(s) 164
XspI CTAG 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.