Rw2G018290

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0019875
Physical Location & Seq
Forward (+)
23445328 .. 23446756
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018290.1

Sequence Viewer

Length: 429 bp
ATGTTGAAAGTTACTCCTAAAGCTTTTGGAGGACGAGGAAGGGTGTTCCCTTTTGAGTCCGACTGCAAGCCCGGCGGCCACGTCGGCATTGGACGGGCTAAAATGGAACTTGTGTTCTGTGTTGCAGGGTCTAGTCAAAGAGAAGGCAGCAAGGTAGCAAAGTTGTCCAAGGCGTTTGGAGTACTTAACGACGATATGCAGTGGCGGGTTGATGGATGGGAGTTGGGGCCGATGTCGCCTGGCCATTGGAAGGAGCGCAGACGAACTGGAGGGTGCTTTGAGGTGGTGTGGCGAGATCAGATATCACCTGAGGGTGATGACCGGATGGCAACATCGCTAAGATTCATTGGTGTCAAATCAGGTCGATTTGTTCTGATCTGGGTTGGGCGTTCTGGCTCCGATATGAGGAACGGTGATGTGGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.65

Weight (kDa)

9.77

Isoelectric Point (pI)

34.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019875)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0105231
rosa_multiflora Rmu_sc0004528.1_g000008
rosa_roxburghii Rroxscaffold_2G00131210 Rroxscaffold_4G00315670 Rroxscaffold_6G00404010
rosa_samantha Rh2DG563800
rosa_wichuraiana Rw2G018290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 75, 205
AcoI YGGCCR 2 cut(s) 76, 241
AfaI GTAC 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 250, 405
AgsI TTSAA 1 cut(s) 7
AjiI CACGTC 1 cut(s) 82
AjnI CCWGG 1 cut(s) 238
AloI GAACNNNNNNTCC 2 cut(s) 98, 130
AluBI AGCT 2 cut(s) 23, 426
AluI AGCT 2 cut(s) 23, 426
AoxI GGCC 3 cut(s) 76, 227, 241
ApeKI GCWGC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 3 cut(s) 297, 326, 425
AsuNHI GCTAGC 1 cut(s) 422
AxyI CCTNAGG 1 cut(s) 309
BalI TGGCCA 1 cut(s) 243
BbvI GCAGC 1 cut(s) 159
BccI CCATC 3 cut(s) 206, 210, 319
BciT130I CCWGG 1 cut(s) 240
BcnI CCSGG 1 cut(s) 72
BfaI CTAG 3 cut(s) 132, 423, 427
BglI GCCNNNNNGGC 1 cut(s) 84
BisI GCNGC 2 cut(s) 76, 148
BlsI GCNGC 2 cut(s) 77, 149
BmcAI AGTACT 1 cut(s) 183
Bme1390I CCNGG 2 cut(s) 72, 240
BmgBI CACGTC 1 cut(s) 82
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 2 cut(s) 228, 397
BmrFI CCNGG 2 cut(s) 72, 240
BmtI GCTAGC 1 cut(s) 426
BpmI CTGGAG 1 cut(s) 288
BpuMI CCSGG 1 cut(s) 72
BsaJI CCNNGG 1 cut(s) 168
BsaWI WCCGGW 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 405
Bse1I ACTGG 1 cut(s) 271
Bse21I CCTNAGG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 2 cut(s) 221, 330
BseLI CCNNNNNNNGG 2 cut(s) 250, 405
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 271
BseXI GCAGC 1 cut(s) 159
BshFI GGCC 3 cut(s) 78, 229, 243
BsiSI CCGG 2 cut(s) 72, 322
BslI CCNNNNNNNGG 2 cut(s) 250, 405
BsnI GGCC 3 cut(s) 78, 229, 243
Bsp143I GATC 2 cut(s) 295, 375
BspACI CCGC 2 cut(s) 75, 205
BspANI GGCC 3 cut(s) 78, 229, 243
BspCNI CTCAG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 228, 397
BspOI GCTAGC 1 cut(s) 426
BsrI ACTGG 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 2 cut(s) 295, 375
BssT1I CCWWGG 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 413
BstC8I GCNNGC 2 cut(s) 68, 424
BstDEI CTNAG 2 cut(s) 309, 338
BstF5I GGATG 2 cut(s) 221, 330
BstHHI GCGC 1 cut(s) 258
BstKTI GATC 2 cut(s) 298, 378
BstMBI GATC 2 cut(s) 295, 375
BstMWI GCNNNNNNNGC 3 cut(s) 72, 84, 235
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 70, 238
BstV1I GCAGC 1 cut(s) 159
Bsu36I CCTNAGG 1 cut(s) 309
BsuRI GGCC 3 cut(s) 78, 229, 243
BtgZI GCGATG 1 cut(s) 318
BtrI CACGTC 1 cut(s) 82
BtsCI GGATG 2 cut(s) 221, 330
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 206
Cac8I GCNNGC 2 cut(s) 68, 424
CfoI GCGC 1 cut(s) 258
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 182
CviJI RGCY 9 cut(s) 23, 70, 78, 98, 229, 243, 396, 422, 426
CviKI_1 RGCY 9 cut(s) 23, 70, 78, 98, 229, 243, 396, 422, 426
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 2 cut(s) 309, 338
DpnI GATC 2 cut(s) 297, 377
DpnII GATC 2 cut(s) 295, 375
EaeI YGGCCR 2 cut(s) 76, 241
Eco130I CCWWGG 1 cut(s) 168
Eco32I GATATC 1 cut(s) 303
Eco81I CCTNAGG 1 cut(s) 309
EcoRII CCWGG 1 cut(s) 238
EcoRV GATATC 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 168
ErhI CCWWGG 1 cut(s) 168
FaiI YATR 2 cut(s) 197, 404
FauI CCCGC 1 cut(s) 198
Fnu4HI GCNGC 2 cut(s) 76, 148
FokI GGATG 2 cut(s) 228, 337
Fsp4HI GCNGC 2 cut(s) 76, 148
FspBI CTAG 3 cut(s) 132, 423, 427
GlaI GCGC 1 cut(s) 257
GluI GCNGC 2 cut(s) 76, 148
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 3 cut(s) 78, 229, 243
HapII CCGG 2 cut(s) 72, 322
HhaI GCGC 1 cut(s) 258
Hin6I GCGC 1 cut(s) 256
HinP1I GCGC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 2 cut(s) 56, 342
HpaII CCGG 2 cut(s) 72, 322
HphI GGTGA 3 cut(s) 297, 326, 425
Hpy188I TCNGA 4 cut(s) 61, 300, 375, 400
Hpy99I CGWCG 2 cut(s) 86, 194
HpyAV CCTTC 3 cut(s) 33, 137, 244
HpyCH4III ACNGT 1 cut(s) 413
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 3 cut(s) 66, 125, 199
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 84, 235
HpyF3I CTNAG 2 cut(s) 309, 338
HpySE526I ACGT 1 cut(s) 81
HspAI GCGC 1 cut(s) 256
Kzo9I GATC 2 cut(s) 295, 375
LmnI GCTCC 2 cut(s) 253, 401
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 3 cut(s) 132, 423, 427
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 10
MalI GATC 2 cut(s) 297, 377
MboI GATC 2 cut(s) 295, 375
MlsI TGGCCA 1 cut(s) 243
MluNI TGGCCA 1 cut(s) 243
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 6 cut(s) 23, 29, 263, 274, 304, 399
Mox20I TGGCCA 1 cut(s) 243
MscI TGGCCA 1 cut(s) 243
MseI TTAA 1 cut(s) 186
Msp20I TGGCCA 1 cut(s) 243
MspI CCGG 2 cut(s) 72, 322
MspR9I CCNGG 2 cut(s) 72, 240
MvaI CCWGG 1 cut(s) 240
MwoI GCNNNNNNNGC 3 cut(s) 72, 84, 235
NciI CCSGG 1 cut(s) 72
NdeII GATC 2 cut(s) 295, 375
NheI GCTAGC 1 cut(s) 422
NlaIV GGNNCC 2 cut(s) 228, 397
PfeI GAWTC 1 cut(s) 342
PkrI GCNGC 2 cut(s) 77, 149
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
PspN4I GGNNCC 2 cut(s) 228, 397
PspPI GGNCC 1 cut(s) 227
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 76, 148
Sau3AI GATC 2 cut(s) 295, 375
Sau96I GGNCC 1 cut(s) 227
ScaI AGTACT 1 cut(s) 183
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 2 cut(s) 72, 240
SetI ASST 7 cut(s) 25, 84, 156, 285, 310, 364, 428
SsiI CCGC 2 cut(s) 75, 205
SspMI CTAG 3 cut(s) 132, 423, 427
StyD4I CCNGG 2 cut(s) 70, 238
StyI CCWWGG 1 cut(s) 168
TaaI ACNGT 1 cut(s) 413
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 364
TatI WGTACW 1 cut(s) 181
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 206
TseI GCWGC 1 cut(s) 147
TspDTI ATGAA 1 cut(s) 334
TspRI CASTG 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XspI CTAG 3 cut(s) 132, 423, 427
ZrmI AGTACT 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.