Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019872

Physical Location & Seq

Genomic Coordinates Forward (+)

23051203 .. 23051559

Gene Structure 357 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48501

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTACTCGAAATGTGGTCGAATGGGGGATGCGTGTGTTGTGTTCGATGAAATTACTGAGAGAGATGTGGTGTGTTGGACTGCAGTTATAATTGGGTATGTGCAAAATGGTGAGAGTGAGAAGGGTCTGGAATGTCTTTATGAGATGCATAGGATTGGTGGAGATGGTGAGAGGCCAAATTTTAGGACACTGGAAGTTGGGTTTCAAGCTTGTGTGGATATCAGTGAAGGTAGATGTTTACATGGTTTTGTTATGAAAAGTGGAATTGGATGTTCAAACGCTGTTAAGTCTTTGATTTTGTCTATGTATTCCGATGTGGGACACTTGGTGAATCCTTGGTTTTGTTTCGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

118

Amino Acids

13.1

Weight (kDa)

5.06

Isoelectric Point (pI)

35.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	24 - 53	3.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0019872)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111421 RchiOBHm_Chr6g0286681
rosa_laevigata	RLG00000033583 RLG00000034784
rosa_roxburghii	Rroxscaffold_4G00302980
rosa_samantha	Rh2CG230300 Rh6DG290300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	89
AcsI	RAATTY	1 cut(s)	178
AdeI	CACNNNGTG	1 cut(s)	328
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	2 cut(s)	206, 276
AluBI	AGCT	1 cut(s)	209
AluI	AGCT	1 cut(s)	209
AoxI	GGCC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	178
AsuHPI	GGTGA	3 cut(s)	122, 179, 340
BccI	CCATC	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	19, 135
BsaJI	CCNNGG	1 cut(s)	335
Bse1I	ACTGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	2 cut(s)	34, 275
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	195
BshFI	GGCC	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	175
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	34, 275
BstSFI	CTRYAG	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	34, 275
BtsIMutI	CAGTG	2 cut(s)	188, 229
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	2 cut(s)	175, 209
CviKI_1	RGCY	2 cut(s)	175, 209
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	57
DraIII	CACNNNGTG	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	335
Eco32I	GATATC	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	335
EcoT22I	ATGCAT	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	1 cut(s)	245
FaiI	YATR	7 cut(s)	89, 99, 141, 150, 243, 254, 305
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	1 cut(s)	241
FokI	GGATG	2 cut(s)	41, 282
HaeIII	GGCC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	245
HindIII	AAGCTT	1 cut(s)	207
HinfI	GANTC	1 cut(s)	331
HphI	GGTGA	3 cut(s)	122, 179, 340
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	313
Hpy188III	TCNNGA	2 cut(s)	128, 349
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	115, 221
HpyCH4V	TGCA	3 cut(s)	83, 103, 148
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	245
LpnPI	CCDG	2 cut(s)	113, 176
LweI	GCATC	2 cut(s)	19, 135
MluCI	AATT	5 cut(s)	51, 90, 178, 264, 352
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	1 cut(s)	165
Mph1103I	ATGCAT	1 cut(s)	150
MseI	TTAA	1 cut(s)	285
NlaIII	CATG	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	331
PsiI	TTATAA	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	85
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	285
SetI	ASST	2 cut(s)	211, 232
SfaNI	GCATC	2 cut(s)	19, 135
SfcI	CTRYAG	1 cut(s)	81
SgeI	CNNG	9 cut(s)	19, 45, 140, 203, 218, 222, 254, 337, 348
Sse9I	AATT	5 cut(s)	51, 90, 178, 264, 352
StyI	CCWWGG	1 cut(s)	335
TaqI	TCGA	3 cut(s)	8, 19, 45
TasI	AATT	5 cut(s)	51, 90, 178, 264, 352
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	2 cut(s)	195, 229
TspDTI	ATGAA	2 cut(s)	63, 269
TspRI	CASTG	2 cut(s)	195, 229
XapI	RAATTY	1 cut(s)	178
Zsp2I	ATGCAT	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.