Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0019872

Physical Location & Seq

Genomic Coordinates Forward (+)

23295864 .. 23296199

Gene Structure 336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG230300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGGGATGCGTGTGTTGTGTTCGATGAAATTACTGAGAGAGATGTGGTGTGTTGGACTGCAGTTATAATTGGGTATGTGCAAAATGGTGAGAGTGAGAAGGGTCTGGAATGTCTTTATGAGATGCATAGGATTGGTGGAGATGGTGAGAGGCCAAATTTTAGGACACTGGAAGTTGGGTTTCAAGCTTGTGTGGATATCAGTGAAGGTAGATGTTTACATGGTTTTGTTATGAAAAGTGGAATTGGATGTTCAAACGCTGTTAAGTCTTTGATTTTGTCTATGTATTCCGATGTGGGACACTTGGTGAATCCTTGGTTTTGTTTCGTGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

111

Amino Acids

12.27

Weight (kDa)

4.73

Isoelectric Point (pI)

34.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	17 - 46	3.1e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019872)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111421 RchiOBHm_Chr6g0286681
rosa_laevigata	RLG00000033583 RLG00000034784
rosa_roxburghii	Rroxscaffold_4G00302980
rosa_samantha	Rh2CG230300 Rh6DG290300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AcsI	RAATTY	1 cut(s)	157
AdeI	CACNNNGTG	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	185, 255
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AoxI	GGCC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	157
AsuHPI	GGTGA	3 cut(s)	101, 158, 319
BccI	CCATC	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	114
BsaJI	CCNNGG	1 cut(s)	314
Bse1I	ACTGG	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	2 cut(s)	13, 254
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	154
BslFI	GGGAC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	154
BspANI	GGCC	1 cut(s)	154
BspCNI	CTCAG	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	314
BssT1I	CCWWGG	1 cut(s)	314
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	13, 254
BstSFI	CTRYAG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	13, 254
BtsIMutI	CAGTG	2 cut(s)	167, 208
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	2 cut(s)	154, 188
CviKI_1	RGCY	2 cut(s)	154, 188
DdeI	CTNAG	1 cut(s)	36
DraIII	CACNNNGTG	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	314
Eco32I	GATATC	1 cut(s)	199
EcoRV	GATATC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	314
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	1 cut(s)	224
FaiI	YATR	7 cut(s)	68, 78, 120, 129, 222, 233, 284
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	1 cut(s)	220
FokI	GGATG	2 cut(s)	20, 261
HaeIII	GGCC	1 cut(s)	154
Hin1II	CATG	1 cut(s)	224
HindIII	AAGCTT	1 cut(s)	186
HinfI	GANTC	1 cut(s)	310
HphI	GGTGA	3 cut(s)	101, 158, 319
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	2 cut(s)	107, 328
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	94, 200
HpyCH4V	TGCA	3 cut(s)	62, 82, 127
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	1 cut(s)	224
LpnPI	CCDG	2 cut(s)	92, 155
LweI	GCATC	1 cut(s)	114
MluCI	AATT	5 cut(s)	30, 69, 157, 243, 331
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	1 cut(s)	144
Mph1103I	ATGCAT	1 cut(s)	129
MseI	TTAA	1 cut(s)	264
NlaIII	CATG	1 cut(s)	224
NsiI	ATGCAT	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	310
PsiI	TTATAA	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	64
SaqAI	TTAA	1 cut(s)	264
SetI	ASST	2 cut(s)	190, 211
SfaNI	GCATC	1 cut(s)	114
SfcI	CTRYAG	1 cut(s)	60
SgeI	CNNG	8 cut(s)	24, 119, 182, 197, 201, 233, 316, 327
Sse9I	AATT	5 cut(s)	30, 69, 157, 243, 331
StyI	CCWWGG	1 cut(s)	314
TaqI	TCGA	1 cut(s)	24
TasI	AATT	5 cut(s)	30, 69, 157, 243, 331
TfiI	GAWTC	1 cut(s)	310
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	174, 208
TspDTI	ATGAA	2 cut(s)	42, 248
TspRI	CASTG	2 cut(s)	174, 208
XapI	RAATTY	1 cut(s)	157
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.