Pentatricopeptide repeat-containing protein At4g39952
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0111421 RchiOBHm_Chr6g0286681 |
| rosa_laevigata | RLG00000033583 RLG00000034784 |
| rosa_roxburghii | Rroxscaffold_4G00302980 |
| rosa_samantha | Rh2CG230300 Rh6DG290300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 89, 252, 330 |
| AcsI | RAATTY | 1 cut(s) | 178 |
| AfaI | GTAC | 1 cut(s) | 5 |
| AgsI | TTSAA | 1 cut(s) | 206 |
| AluBI | AGCT | 5 cut(s) | 209, 227, 239, 265, 340 |
| AluI | AGCT | 5 cut(s) | 209, 227, 239, 265, 340 |
| Alw21I | GWGCWC | 1 cut(s) | 45 |
| Alw26I | GTCTC | 1 cut(s) | 307 |
| AoxI | GGCC | 2 cut(s) | 173, 259 |
| ApeKI | GCWGC | 2 cut(s) | 239, 242 |
| ApoI | RAATTY | 1 cut(s) | 178 |
| AsuHPI | GGTGA | 1 cut(s) | 122 |
| Bbv12I | GWGCWC | 1 cut(s) | 45 |
| BbvI | GCAGC | 2 cut(s) | 226, 229 |
| BccI | CCATC | 1 cut(s) | 158 |
| BcoDI | GTCTC | 1 cut(s) | 307 |
| BfaI | CTAG | 2 cut(s) | 191, 346 |
| BfmI | CTRYAG | 1 cut(s) | 228 |
| BisI | GCNGC | 2 cut(s) | 240, 243 |
| BlsI | GCNGC | 2 cut(s) | 241, 244 |
| BmsI | GCATC | 2 cut(s) | 19, 135 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 153, 183 |
| BseGI | GGATG | 1 cut(s) | 34 |
| BseMII | CTCAG | 2 cut(s) | 48, 72 |
| BseXI | GCAGC | 2 cut(s) | 226, 229 |
| BshFI | GGCC | 2 cut(s) | 175, 261 |
| BsiHKAI | GWGCWC | 1 cut(s) | 45 |
| BsmAI | GTCTC | 1 cut(s) | 307 |
| BsnI | GGCC | 2 cut(s) | 175, 261 |
| Bsp1286I | GDGCHC | 1 cut(s) | 45 |
| BspANI | GGCC | 2 cut(s) | 175, 261 |
| BspCNI | CTCAG | 2 cut(s) | 49, 73 |
| BstC8I | GCNNGC | 1 cut(s) | 263 |
| BstDEI | CTNAG | 2 cut(s) | 57, 81 |
| BstF5I | GGATG | 1 cut(s) | 34 |
| BstMAI | GTCTC | 1 cut(s) | 307 |
| BstSFI | CTRYAG | 1 cut(s) | 228 |
| BstV1I | GCAGC | 2 cut(s) | 226, 229 |
| BsuRI | GGCC | 2 cut(s) | 175, 261 |
| BtsCI | GGATG | 1 cut(s) | 34 |
| Cac8I | GCNNGC | 1 cut(s) | 263 |
| Csp6I | GTAC | 1 cut(s) | 4 |
| CviJI | RGCY | 7 cut(s) | 175, 209, 227, 239, 261, 265, 340 |
| CviKI_1 | RGCY | 7 cut(s) | 175, 209, 227, 239, 261, 265, 340 |
| CviQI | GTAC | 1 cut(s) | 4 |
| DdeI | CTNAG | 2 cut(s) | 57, 81 |
| EcoT22I | ATGCAT | 1 cut(s) | 150 |
| FaiI | YATR | 8 cut(s) | 89, 99, 105, 150, 221, 230, 252, 330 |
| Fnu4HI | GCNGC | 2 cut(s) | 240, 243 |
| FokI | GGATG | 1 cut(s) | 41 |
| Fsp4HI | GCNGC | 2 cut(s) | 240, 243 |
| FspBI | CTAG | 2 cut(s) | 191, 346 |
| GluI | GCNGC | 2 cut(s) | 240, 243 |
| HaeIII | GGCC | 2 cut(s) | 175, 261 |
| HindIII | AAGCTT | 1 cut(s) | 207 |
| HphI | GGTGA | 1 cut(s) | 122 |
| Hpy188I | TCNGA | 1 cut(s) | 336 |
| Hpy188III | TCNNGA | 1 cut(s) | 128 |
| HpyAV | CCTTC | 1 cut(s) | 115 |
| HpyCH4V | TGCA | 3 cut(s) | 103, 148, 298 |
| HpyF3I | CTNAG | 2 cut(s) | 57, 81 |
| LpnPI | CCDG | 3 cut(s) | 113, 275, 291 |
| Lsp1109I | GCAGC | 2 cut(s) | 226, 229 |
| LweI | GCATC | 2 cut(s) | 19, 135 |
| MaeI | CTAG | 2 cut(s) | 191, 346 |
| MhlI | GDGCHC | 1 cut(s) | 45 |
| MluCI | AATT | 3 cut(s) | 51, 90, 178 |
| MmeI | TCCRAC | 1 cut(s) | 56 |
| MnlI | CCTC | 3 cut(s) | 76, 165, 251 |
| Mph1103I | ATGCAT | 1 cut(s) | 150 |
| MslI | CAYNNNNRTG | 1 cut(s) | 108 |
| NsiI | ATGCAT | 1 cut(s) | 150 |
| PkrI | GCNGC | 2 cut(s) | 241, 244 |
| PsiI | TTATAA | 3 cut(s) | 89, 252, 330 |
| RsaI | GTAC | 1 cut(s) | 5 |
| RsaNI | GTAC | 1 cut(s) | 4 |
| RseI | CAYNNNNRTG | 1 cut(s) | 108 |
| SatI | GCNGC | 2 cut(s) | 240, 243 |
| SduI | GDGCHC | 1 cut(s) | 45 |
| SetI | ASST | 6 cut(s) | 87, 211, 229, 241, 267, 342 |
| SfaNI | GCATC | 2 cut(s) | 19, 135 |
| SfcI | CTRYAG | 1 cut(s) | 228 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 108 |
| Sse9I | AATT | 3 cut(s) | 51, 90, 178 |
| SspMI | CTAG | 2 cut(s) | 191, 346 |
| TaqI | TCGA | 3 cut(s) | 8, 19, 45 |
| TasI | AATT | 3 cut(s) | 51, 90, 178 |
| TatI | WGTACW | 1 cut(s) | 3 |
| TseI | GCWGC | 2 cut(s) | 239, 242 |
| TspDTI | ATGAA | 1 cut(s) | 63 |
| XapI | RAATTY | 1 cut(s) | 178 |
| XspI | CTAG | 2 cut(s) | 191, 346 |
| Zsp2I | ATGCAT | 1 cut(s) | 150 |