Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019872

Physical Location & Seq

Genomic Coordinates Reverse (-)

29254776 .. 29255654

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033583

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGTACTCGAAATGTGGTCGAATAAGGGATGCATGTGTCGTGTTCAATGAAATTACTGAGAGAGATGTGGTGTGTTGGACCGCGGTTGTAATTGGGTATGTGCAGAATGGTGAGAGTGAGAAGGGTCTGGAATGTCTTTTTGAGATGCATAGGATTGGTGGAGATGGTGAGAGGCCAAATTTTAGGACACTGGAAGTTAGATGTGGGACACCTGGTGAATCCTTGGTTTTGTTTCGTGAATTAAGAAATAGAGATCTTCTATCATGGACGTCGGTTATTGGTGCTTATGCTAGATCTGGGTTAGTGGCAGAATGCTTATGTTTATTTTGGGAAATACAGGATAGTGATATTGTTGCGGATGAAATCGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

125

Amino Acids

13.98

Weight (kDa)

4.81

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019872)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111421 RchiOBHm_Chr6g0286681
rosa_laevigata	RLG00000033583 RLG00000034784
rosa_roxburghii	Rroxscaffold_4G00302980
rosa_samantha	Rh2CG230300 Rh6DG290300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	272
AccII	CGCG	1 cut(s)	83
AciI	CCGC	3 cut(s)	81, 83, 356
AcsI	RAATTY	1 cut(s)	178
AcyI	GRCGYC	1 cut(s)	269
AdeI	CACNNNGTG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	46
AjnI	CCWGG	1 cut(s)	211
AoxI	GGCC	1 cut(s)	173
ApoI	RAATTY	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	3 cut(s)	122, 179, 227
AvaII	GGWCC	1 cut(s)	78
BccI	CCATC	1 cut(s)	158
BciT130I	CCWGG	1 cut(s)	213
BfaI	CTAG	1 cut(s)	291
BglII	AGATCT	2 cut(s)	253, 293
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	19, 135
BsaHI	GRCGYC	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	81, 222
Bse1I	ACTGG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	213
BseDI	CCNNGG	2 cut(s)	81, 222
BseGI	GGATG	2 cut(s)	34, 364
BseMII	CTCAG	1 cut(s)	48
BseNI	ACTGG	1 cut(s)	195
BsgI	GTGCAG	1 cut(s)	122
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	175
BslFI	GGGAC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	220
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	175
Bsp143I	GATC	2 cut(s)	253, 293
BspACI	CCGC	3 cut(s)	81, 83, 356
BspANI	GGCC	1 cut(s)	175
BspCNI	CTCAG	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	81, 222
BssMI	GATC	2 cut(s)	253, 293
BssNI	GRCGYC	1 cut(s)	269
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	213
BstACI	GRCGYC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	57
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	34, 364
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	2 cut(s)	256, 296
BstMBI	GATC	2 cut(s)	253, 293
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	211
BstUI	CGCG	1 cut(s)	83
BstX2I	RGATCY	2 cut(s)	253, 293
BstYI	RGATCY	2 cut(s)	253, 293
BsuRI	GGCC	1 cut(s)	175
BtgI	CCRYGG	1 cut(s)	81
BtsCI	GGATG	2 cut(s)	34, 364
BtsIMutI	CAGTG	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	78
Cfr42I	CCGCGG	1 cut(s)	84
CsiI	ACCWGGT	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	33, 264
CviJI	RGCY	1 cut(s)	175
CviKI_1	RGCY	1 cut(s)	175
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	57
DpnI	GATC	2 cut(s)	255, 295
DpnII	GATC	2 cut(s)	253, 293
DraIII	CACNNNGTG	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	2 cut(s)	34, 150
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	36, 267
FaiI	YATR	6 cut(s)	34, 99, 150, 265, 288, 319
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	2 cut(s)	32, 263
FokI	GGATG	2 cut(s)	41, 371
FspBI	CTAG	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	175
Hin1I	GRCGYC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	36, 267
HinfI	GANTC	1 cut(s)	218
HphI	GGTGA	3 cut(s)	122, 179, 227
Hpy188III	TCNNGA	3 cut(s)	128, 236, 367
Hpy99I	CGWCG	1 cut(s)	274
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	3 cut(s)	32, 103, 148
HpyF3I	CTNAG	1 cut(s)	57
HpySE526I	ACGT	1 cut(s)	269
Hsp92I	GRCGYC	1 cut(s)	269
Hsp92II	CATG	2 cut(s)	36, 267
KspI	CCGCGG	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	253, 293
LpnPI	CCDG	6 cut(s)	113, 176, 198, 225, 282, 323
LweI	GCATC	2 cut(s)	19, 135
MabI	ACCWGGT	1 cut(s)	211
MaeI	CTAG	1 cut(s)	291
MaeII	ACGT	1 cut(s)	269
MalI	GATC	2 cut(s)	255, 295
MboI	GATC	2 cut(s)	253, 293
MboII	GAAGA	1 cut(s)	248
MflI	RGATCY	2 cut(s)	253, 293
MluCI	AATT	4 cut(s)	51, 90, 178, 239
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	1 cut(s)	165
Mph1103I	ATGCAT	2 cut(s)	34, 150
MseI	TTAA	1 cut(s)	242
MspA1I	CMGCKG	1 cut(s)	83
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	1 cut(s)	83
NdeII	GATC	2 cut(s)	253, 293
NlaIII	CATG	2 cut(s)	36, 267
NsiI	ATGCAT	2 cut(s)	34, 150
NspI	RCATGY	1 cut(s)	36
PctI	GAATGC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	78
PsuI	RGATCY	2 cut(s)	253, 293
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SacII	CCGCGG	1 cut(s)	84
SaqAI	TTAA	1 cut(s)	242
Sau3AI	GATC	2 cut(s)	253, 293
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	213
SetI	ASST	2 cut(s)	214, 272
SexAI	ACCWGGT	1 cut(s)	211
SfaNI	GCATC	2 cut(s)	19, 135
Sfr303I	CCGCGG	1 cut(s)	84
SgrBI	CCGCGG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	78
Sse9I	AATT	4 cut(s)	51, 90, 178, 239
SsiI	CCGC	3 cut(s)	81, 83, 356
SspMI	CTAG	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	2 cut(s)	8, 19
TasI	AATT	4 cut(s)	51, 90, 178, 239
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	1 cut(s)	195
TspDTI	ATGAA	2 cut(s)	63, 375
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	78
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	36
XspI	CTAG	1 cut(s)	291
ZraI	GACGTC	1 cut(s)	270
Zsp2I	ATGCAT	2 cut(s)	34, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.