Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0019872

Physical Location & Seq

Genomic Coordinates Reverse (-)

23319066 .. 23332532

Gene Structure 13467 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCAAAGCCAACAAAATTTGCTTTCTACCCGTACACTGCGAACACACTATCCCGGCTTCACCACGATTACTCGACCTACGGGATTAACCCTACACCATCGAATAGTATACCAGGATTGAAAACCGAGAGAATTGAAACCGCTAAAAACAATAACAATATCAAACGATCTCCAAAAAGAGATGTGGTGTGTTGGACTGTAGTTATAATTGGGTATGTGCGGAATGGTGAGAGTGAGAAGGGTCCGGAATGTCTTTGTGAGATGCATAGGATTGGTGGAGATGGTGAGAGGCCAAATTTTAGGACAACGGAAGTTGGGTTTCAAGCTTGTGTGGATATGGGAGCTATAAGAGAAGTGGAATTGGATGTTCGAAAATTTGTTAAGTCTTTGATTTTGTCTATGTATTCCGGATGTGGGACACCTGGTGAATCCTTGGTTTTGTTTCGTGAATTAAGAAATAGAGATCTTCTATCATGGACGTCGGTTATTGGTGCTTATGTTAGATGCGGGTTAGTGGCAAAATGCTTGTGTTTATTTTGGGAAATGCGGGATAGTGACATTGTTGCGGAGAGAAGTGAAGATGAAGATCGTCCGCCCAGGCCTACTAATCACCCGCCCGGACCAACTAATCACCCGCCCGGGCCAACTAATCGGCCGGCTAAACTCCAGGCCGCCTACCGCACGAGTTGGTGTTACTCGCGGAGGCCACCCACCGCCCGGTGCCTAGGCGCGGCCTGGCGGCACAGCGGCCGAGTTTTAGAACACGGGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

257

Amino Acids

28.92

Weight (kDa)

9.12

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019872)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111421 RchiOBHm_Chr6g0286681
rosa_laevigata	RLG00000033583 RLG00000034784
rosa_roxburghii	Rroxscaffold_4G00302980
rosa_samantha	Rh2CG230300 Rh6DG290300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	206
AatII	GACGTC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	720
AccI	GTMKAC	1 cut(s)	109
AccII	CGCG	2 cut(s)	700, 731
AccIII	TCCGGA	2 cut(s)	244, 407
AcoI	YGGCCR	2 cut(s)	653, 748
AcsI	RAATTY	3 cut(s)	17, 295, 374
AcyI	GRCGYC	1 cut(s)	479
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	414, 717, 730
AgsI	TTSAA	3 cut(s)	121, 137, 323
AjnI	CCWGG	5 cut(s)	112, 421, 596, 666, 734
AloI	GAACNNNNNNTCC	2 cut(s)	35, 67
AluBI	AGCT	2 cut(s)	326, 344
AluI	AGCT	2 cut(s)	326, 344
Ama87I	CYCGRG	1 cut(s)	638
Aor13HI	TCCGGA	2 cut(s)	244, 407
AoxI	GGCC	8 cut(s)	290, 599, 641, 653, 669, 704, 732, 748
ApoI	RAATTY	3 cut(s)	17, 295, 374
AspA2I	CCTAGG	1 cut(s)	724
AspLEI	GCGC	1 cut(s)	731
AspS9I	GGNCC	3 cut(s)	242, 620, 641
AsuC2I	CCSGG	5 cut(s)	55, 618, 639, 640, 718
AsuHPI	GGTGA	6 cut(s)	53, 239, 296, 437, 602, 623
AsuII	TTCGAA	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	638
AvaII	GGWCC	2 cut(s)	242, 620
AvrII	CCTAGG	1 cut(s)	724
BanI	GGYRCC	1 cut(s)	720
BauI	CACGAG	1 cut(s)	682
BccI	CCATC	2 cut(s)	106, 275
BciT130I	CCWGG	5 cut(s)	114, 423, 598, 668, 736
BcnI	CCSGG	5 cut(s)	55, 618, 639, 640, 718
BfaI	CTAG	1 cut(s)	725
BfmI	CTRYAG	1 cut(s)	198
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	4 cut(s)	672, 732, 740, 748
BlnI	CCTAGG	1 cut(s)	724
BlsI	GCNGC	4 cut(s)	673, 733, 741, 749
Bme18I	GGWCC	2 cut(s)	242, 620
BmeT110I	CYCGRG	1 cut(s)	638
BmgT120I	GGNCC	3 cut(s)	242, 620, 641
BmiI	GGNNCC	2 cut(s)	243, 722
BmsI	GCATC	2 cut(s)	252, 494
BpmI	CTGGAG	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	370
BpuMI	CCSGG	5 cut(s)	55, 618, 639, 640, 718
BsaBI	GATNNNNATC	1 cut(s)	585
BsaHI	GRCGYC	1 cut(s)	479
BsaJI	CCNNGG	4 cut(s)	432, 596, 638, 724
BsaWI	WCCGGW	2 cut(s)	244, 407
Bsc4I	CCNNNNNNNGG	3 cut(s)	414, 717, 730
Bse118I	RCCGGY	1 cut(s)	655
Bse8I	GATNNNNATC	1 cut(s)	585
BseAI	TCCGGA	2 cut(s)	244, 407
BseBI	CCWGG	5 cut(s)	114, 423, 598, 668, 736
BseDI	CCNNGG	4 cut(s)	432, 596, 638, 724
BseGI	GGATG	2 cut(s)	370, 416
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	3 cut(s)	414, 717, 730
BseX3I	CGGCCG	2 cut(s)	653, 748
Bsh1236I	CGCG	2 cut(s)	700, 731
Bsh1285I	CGRYCG	2 cut(s)	656, 751
BshFI	GGCC	8 cut(s)	292, 601, 643, 655, 671, 706, 734, 750
BshNI	GGYRCC	1 cut(s)	720
BsiEI	CGRYCG	2 cut(s)	656, 751
BsiHKCI	CYCGRG	1 cut(s)	638
BsiSI	CCGG	7 cut(s)	55, 245, 408, 618, 639, 656, 718
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	3 cut(s)	414, 717, 730
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	8 cut(s)	292, 601, 643, 655, 671, 706, 734, 750
BsoBI	CYCGRG	1 cut(s)	638
Bsp119I	TTCGAA	1 cut(s)	370
Bsp13I	TCCGGA	2 cut(s)	244, 407
Bsp143I	GATC	3 cut(s)	167, 463, 586
BspANI	GGCC	8 cut(s)	292, 601, 643, 655, 671, 706, 734, 750
BspEI	TCCGGA	2 cut(s)	244, 407
BspFNI	CGCG	2 cut(s)	700, 731
BspLI	GGNNCC	2 cut(s)	243, 722
BspT104I	TTCGAA	1 cut(s)	370
BspT107I	GGYRCC	1 cut(s)	720
BsrFI	RCCGGY	1 cut(s)	655
BssAI	RCCGGY	1 cut(s)	655
BssECI	CCNNGG	4 cut(s)	432, 596, 638, 724
BssMI	GATC	3 cut(s)	167, 463, 586
BssNAI	GTATAC	1 cut(s)	110
BssNI	GRCGYC	1 cut(s)	479
BssSI	CACGAG	1 cut(s)	682
BssT1I	CCWWGG	2 cut(s)	432, 724
Bst1107I	GTATAC	1 cut(s)	110
Bst2BI	CACGAG	1 cut(s)	682
Bst2UI	CCWGG	5 cut(s)	114, 423, 598, 668, 736
Bst4CI	ACNGT	1 cut(s)	199
BstACI	GRCGYC	1 cut(s)	479
BstBI	TTCGAA	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	657
BstF5I	GGATG	2 cut(s)	370, 416
BstFNI	CGCG	2 cut(s)	700, 731
BstHHI	GCGC	1 cut(s)	731
BstKTI	GATC	3 cut(s)	170, 466, 589
BstMBI	GATC	3 cut(s)	167, 463, 586
BstMCI	CGRYCG	2 cut(s)	656, 751
BstNI	CCWGG	5 cut(s)	114, 423, 598, 668, 736
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	2 cut(s)	700, 731
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BstZ17I	GTATAC	1 cut(s)	110
BstZI	CGGCCG	2 cut(s)	653, 748
BsuRI	GGCC	8 cut(s)	292, 601, 643, 655, 671, 706, 734, 750
BtsCI	GGATG	2 cut(s)	370, 416
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	657
CfoI	GCGC	1 cut(s)	731
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	3 cut(s)	242, 620, 641
Cfr9I	CCCGGG	1 cut(s)	638
CsiI	ACCWGGT	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	474
CviQI	GTAC	1 cut(s)	34
DpnI	GATC	3 cut(s)	169, 465, 588
DpnII	GATC	3 cut(s)	167, 463, 586
DraIII	CACNNNGTG	1 cut(s)	425
EaeI	YGGCCR	2 cut(s)	653, 748
EagI	CGGCCG	2 cut(s)	653, 748
EciI	GGCGGA	1 cut(s)	582
EclXI	CGGCCG	2 cut(s)	653, 748
Eco130I	CCWWGG	2 cut(s)	432, 724
Eco147I	AGGCCT	1 cut(s)	601
Eco47I	GGWCC	2 cut(s)	242, 620
Eco52I	CGGCCG	2 cut(s)	653, 748
Eco88I	CYCGRG	1 cut(s)	638
EcoRII	CCWGG	5 cut(s)	112, 421, 596, 666, 734
EcoT14I	CCWWGG	2 cut(s)	432, 724
EcoT22I	ATGCAT	1 cut(s)	267
ErhI	CCWWGG	2 cut(s)	432, 724
FaeI	CATG	1 cut(s)	477
FaiI	YATR	9 cut(s)	110, 206, 216, 267, 338, 347, 401, 475, 498
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	1 cut(s)	473
FauI	CCCGC	4 cut(s)	500, 540, 621, 642
FblI	GTMKAC	1 cut(s)	109
Fnu4HI	GCNGC	4 cut(s)	672, 732, 740, 748
FokI	GGATG	2 cut(s)	377, 423
Fsp4HI	GCNGC	4 cut(s)	672, 732, 740, 748
FspBI	CTAG	1 cut(s)	725
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	4 cut(s)	672, 732, 740, 748
GsuI	CTGGAG	1 cut(s)	650
HaeIII	GGCC	8 cut(s)	292, 601, 643, 655, 671, 706, 734, 750
HapII	CCGG	7 cut(s)	55, 245, 408, 618, 639, 656, 718
HhaI	GCGC	1 cut(s)	731
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	1 cut(s)	477
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	1 cut(s)	428
HpaII	CCGG	7 cut(s)	55, 245, 408, 618, 639, 656, 718
HphI	GGTGA	6 cut(s)	53, 239, 296, 437, 602, 623
Hpy166II	GTNNAC	2 cut(s)	36, 110
Hpy188III	TCNNGA	3 cut(s)	245, 408, 446
Hpy8I	GTNNAC	2 cut(s)	36, 110
Hpy99I	CGWCG	1 cut(s)	484
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	1 cut(s)	265
HpySE526I	ACGT	1 cut(s)	479
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	1 cut(s)	477
HspAI	GCGC	1 cut(s)	729
Kpn2I	TCCGGA	2 cut(s)	244, 407
KroI	GCCGGC	1 cut(s)	655
KroNI	GCCGGC	1 cut(s)	657
Kzo9I	GATC	3 cut(s)	167, 463, 586
LmnI	GCTCC	1 cut(s)	341
LweI	GCATC	2 cut(s)	252, 494
MabI	ACCWGGT	1 cut(s)	421
MaeI	CTAG	1 cut(s)	725
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	2 cut(s)	554, 692
MalI	GATC	3 cut(s)	169, 465, 588
MboI	GATC	3 cut(s)	167, 463, 586
MboII	GAAGA	3 cut(s)	458, 590, 596
MflI	RGATCY	1 cut(s)	463
MluCI	AATT	8 cut(s)	17, 132, 207, 295, 359, 374, 449, 769
MmeI	TCCRAC	1 cut(s)	173
MnlI	CCTC	2 cut(s)	282, 696
Mph1103I	ATGCAT	1 cut(s)	267
MroI	TCCGGA	2 cut(s)	244, 407
MroNI	GCCGGC	1 cut(s)	655
MseI	TTAA	4 cut(s)	87, 381, 452, 772
MspA1I	CMGCKG	1 cut(s)	747
MspI	CCGG	7 cut(s)	55, 245, 408, 618, 639, 656, 718
MvaI	CCWGG	5 cut(s)	114, 423, 598, 668, 736
MvnI	CGCG	2 cut(s)	700, 731
NaeI	GCCGGC	1 cut(s)	657
NciI	CCSGG	5 cut(s)	55, 618, 639, 640, 718
NdeII	GATC	3 cut(s)	167, 463, 586
NgoMIV	GCCGGC	1 cut(s)	655
NlaIII	CATG	1 cut(s)	477
NlaIV	GGNNCC	2 cut(s)	243, 722
NmuCI	GTSAC	1 cut(s)	554
NsiI	ATGCAT	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	370
PceI	AGGCCT	1 cut(s)	601
PdiI	GCCGGC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	4 cut(s)	673, 733, 741, 749
PsiI	TTATAA	1 cut(s)	206
Psp6I	CCWGG	5 cut(s)	112, 421, 596, 666, 734
PspGI	CCWGG	5 cut(s)	112, 421, 596, 666, 734
PspN4I	GGNNCC	2 cut(s)	243, 722
PspPI	GGNCC	3 cut(s)	242, 620, 641
PsuI	RGATCY	1 cut(s)	463
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	4 cut(s)	87, 381, 452, 772
SatI	GCNGC	4 cut(s)	672, 732, 740, 748
Sau3AI	GATC	3 cut(s)	167, 463, 586
Sau96I	GGNCC	3 cut(s)	242, 620, 641
SetI	ASST	5 cut(s)	80, 328, 346, 424, 482
SexAI	ACCWGGT	1 cut(s)	421
SfaNI	GCATC	2 cut(s)	252, 494
SfcI	CTRYAG	1 cut(s)	198
SfuI	TTCGAA	1 cut(s)	370
SinI	GGWCC	2 cut(s)	242, 620
SmaI	CCCGGG	1 cut(s)	640
SrfI	GCCCGGGC	1 cut(s)	640
Sse9I	AATT	8 cut(s)	17, 132, 207, 295, 359, 374, 449, 769
SseBI	AGGCCT	1 cut(s)	601
SspMI	CTAG	1 cut(s)	725
StuI	AGGCCT	1 cut(s)	601
StyI	CCWWGG	2 cut(s)	432, 724
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	3 cut(s)	74, 101, 370
TasI	AATT	8 cut(s)	17, 132, 207, 295, 359, 374, 449, 769
TauI	GCSGC	4 cut(s)	674, 734, 742, 750
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	4 cut(s)	87, 381, 452, 772
Tru9I	TTAA	4 cut(s)	87, 381, 452, 772
TscAI	CASTG	1 cut(s)	43
TseFI	GTSAC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	554
TspDTI	ATGAA	1 cut(s)	597
TspGWI	ACGGA	1 cut(s)	323
TspMI	CCCGGG	1 cut(s)	638
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	242, 620
XapI	RAATTY	3 cut(s)	17, 295, 374
XmaI	CCCGGG	1 cut(s)	638
XmaJI	CCTAGG	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	1 cut(s)	725
ZraI	GACGTC	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.