Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0019872

Physical Location & Seq

Genomic Coordinates Forward (+)

54521146 .. 54522021

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034784

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGCCGGCCTCAAGAAAAGAGCTCCTTCTACATATTGCGAATGGGTCCTCTGGCTTTCCCTCACCCTTCACTTCTTCAGCTCCTACCTCATTAGTAACCACCCAAATCAGAACAAGCCCACCAACTCTCTCTCCAAAACCCATTTCCCCAACTTAGCCTCCTGCACCCTTTTCGAATCCGCCATTGACAACACCACCGCCAACGTCGTCTTCGCTCAGCCACCACCAAAGAAAAATGGTGAGAGTGAGAAGGGTCTGGAATGTCTTTGTGAGATGCATAGGATTGGTGGAGATAGTGAGAGGCCAAATTTTAGGACACTGGAAGTTGGGTTTCAAGCTTGTGTAGATATGGAAGCTATAGGAGAAGGTAGATGTTTACATGGTTTTGTTGTGAAAAGTGGAATTGGATGTTCAGAAGTTGTTAAGTCTTTGATTTTGTCTATGTATTCCAGATGTGGGACACTTGGTGAATCCTTGGTTTTGTTTCGTGAATTAAGAAATAGAGATCTTCTATCATGGACGTCAGTTATTGGTGTTATGCTAGATCTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

185

Amino Acids

20.35

Weight (kDa)

6.94

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019872)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0111421 RchiOBHm_Chr6g0286681
rosa_laevigata	RLG00000033583 RLG00000034784
rosa_roxburghii	Rroxscaffold_4G00302980
rosa_samantha	Rh2CG230300 Rh6DG290300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	524
AciI	CCGC	2 cut(s)	180, 198
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	61
AcyI	GRCGYC	1 cut(s)	521
AdeI	CACNNNGTG	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	456
AgsI	TTSAA	1 cut(s)	335
AjuI	GAANNNNNNNTTGG	4 cut(s)	128, 160, 194, 226
AluBI	AGCT	4 cut(s)	23, 81, 338, 356
AluI	AGCT	4 cut(s)	23, 81, 338, 356
Alw21I	GWGCWC	1 cut(s)	25
AoxI	GGCC	3 cut(s)	3, 7, 302
ApoI	RAATTY	1 cut(s)	307
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	3 cut(s)	55, 251, 479
AsuII	TTCGAA	1 cut(s)	174
AvaII	GGWCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	202
Bbv12I	GWGCWC	1 cut(s)	25
BcgI	CGANNNNNNTGC	2 cut(s)	154, 188
BfaI	CTAG	1 cut(s)	542
BfmI	CTRYAG	1 cut(s)	357
BglII	AGATCT	2 cut(s)	505, 544
BlpI	GCTNAGC	1 cut(s)	216
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	47
BmsI	GCATC	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	202
Bpu1102I	GCTNAGC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	174
BsaHI	GRCGYC	1 cut(s)	521
BsaJI	CCNNGG	1 cut(s)	474
BsaXI	ACNNNNNCTCC	4 cut(s)	116, 143, 146, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	456
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	324
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	413
BseLI	CCNNNNNNNGG	1 cut(s)	456
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	1 cut(s)	324
BsgI	GTGCAG	1 cut(s)	148
BshFI	GGCC	3 cut(s)	5, 9, 304
BsiHKAI	GWGCWC	1 cut(s)	25
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	472
BsnI	GGCC	3 cut(s)	5, 9, 304
Bsp119I	TTCGAA	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	505, 544
Bsp1720I	GCTNAGC	1 cut(s)	216
BspACI	CCGC	2 cut(s)	180, 198
BspANI	GGCC	3 cut(s)	5, 9, 304
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	47
BspT104I	TTCGAA	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	2 cut(s)	505, 544
BssNI	GRCGYC	1 cut(s)	521
BssT1I	CCWWGG	1 cut(s)	474
BstACI	GRCGYC	1 cut(s)	521
BstBI	TTCGAA	1 cut(s)	174
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	2 cut(s)	154, 216
BstF5I	GGATG	1 cut(s)	413
BstKTI	GATC	2 cut(s)	508, 547
BstMBI	GATC	2 cut(s)	505, 544
BstSFI	CTRYAG	1 cut(s)	357
BstV2I	GAAGAC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	505, 544
BstYI	RGATCY	2 cut(s)	505, 544
BsuRI	GGCC	3 cut(s)	5, 9, 304
BtsCI	GGATG	1 cut(s)	413
BtsIMutI	CAGTG	1 cut(s)	317
Cac8I	GCNNGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	46
CviAII	CATG	2 cut(s)	380, 516
DdeI	CTNAG	2 cut(s)	154, 216
DpnI	GATC	2 cut(s)	507, 546
DpnII	GATC	2 cut(s)	505, 544
DraIII	CACNNNGTG	1 cut(s)	467
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	169
Ecl136II	GAGCTC	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	474
Eco24I	GRGCYC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	46
Eco53kI	GAGCTC	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	474
EcoT22I	ATGCAT	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	25
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	2 cut(s)	383, 519
FaiI	YATR	8 cut(s)	34, 279, 350, 359, 381, 443, 517, 539
FalI	AAGNNNNNCTT	2 cut(s)	10, 42
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	2 cut(s)	379, 515
FokI	GGATG	1 cut(s)	420
FriOI	GRGCYC	1 cut(s)	25
FseI	GGCCGGCC	1 cut(s)	9
FspBI	CTAG	1 cut(s)	542
HaeIII	GGCC	3 cut(s)	5, 9, 304
HapII	CCGG	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	521
Hin1II	CATG	2 cut(s)	383, 519
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	2 cut(s)	176, 470
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	3 cut(s)	55, 251, 479
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	111, 415
Hpy188III	TCNNGA	4 cut(s)	13, 257, 450, 488
Hpy8I	GTNNAC	1 cut(s)	377
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	36, 77, 244, 359
HpyCH4IV	ACGT	2 cut(s)	204, 521
HpyCH4V	TGCA	2 cut(s)	165, 277
HpyF3I	CTNAG	2 cut(s)	154, 216
HpySE526I	ACGT	2 cut(s)	204, 521
Hsp92I	GRCGYC	1 cut(s)	521
Hsp92II	CATG	2 cut(s)	383, 519
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	505, 544
LmnI	GCTCC	2 cut(s)	28, 86
LpnPI	CCDG	7 cut(s)	19, 37, 175, 242, 305, 463, 533
LweI	GCATC	1 cut(s)	264
MaeI	CTAG	1 cut(s)	542
MaeII	ACGT	2 cut(s)	204, 521
MaeIII	GTNAC	1 cut(s)	95
MalI	GATC	2 cut(s)	507, 546
MboI	GATC	2 cut(s)	505, 544
MboII	GAAGA	3 cut(s)	67, 202, 500
MflI	RGATCY	2 cut(s)	505, 544
MhlI	GDGCHC	1 cut(s)	25
MluCI	AATT	3 cut(s)	307, 402, 491
MnlI	CCTC	6 cut(s)	20, 59, 71, 98, 169, 294
Mph1103I	ATGCAT	1 cut(s)	279
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	2 cut(s)	423, 494
MspI	CCGG	1 cut(s)	6
NaeI	GCCGGC	1 cut(s)	7
NdeII	GATC	2 cut(s)	505, 544
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	2 cut(s)	383, 519
NlaIV	GGNNCC	1 cut(s)	47
NsiI	ATGCAT	1 cut(s)	279
NspV	TTCGAA	1 cut(s)	174
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	176, 470
PpuMI	RGGWCCY	1 cut(s)	46
Psp124BI	GAGCTC	1 cut(s)	25
Psp5II	RGGWCCY	1 cut(s)	46
PspN4I	GGNNCC	1 cut(s)	47
PspPI	GGNCC	1 cut(s)	46
PspPPI	RGGWCCY	1 cut(s)	46
PsuI	RGATCY	2 cut(s)	505, 544
RigI	GGCCGGCC	1 cut(s)	9
SacI	GAGCTC	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	423, 494
Sau3AI	GATC	2 cut(s)	505, 544
Sau96I	GGNCC	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	25
SetI	ASST	8 cut(s)	25, 83, 90, 207, 340, 358, 370, 524
SfaNI	GCATC	1 cut(s)	264
SfcI	CTRYAG	1 cut(s)	357
SfuI	TTCGAA	1 cut(s)	174
SinI	GGWCC	1 cut(s)	46
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
Sse9I	AATT	3 cut(s)	307, 402, 491
SsiI	CCGC	2 cut(s)	180, 198
SspMI	CTAG	1 cut(s)	542
SstI	GAGCTC	1 cut(s)	25
StyI	CCWWGG	1 cut(s)	474
TaiI	ACGT	2 cut(s)	207, 524
TaqI	TCGA	1 cut(s)	174
TasI	AATT	3 cut(s)	307, 402, 491
TfiI	GAWTC	2 cut(s)	176, 470
Tru1I	TTAA	2 cut(s)	423, 494
Tru9I	TTAA	2 cut(s)	423, 494
TscAI	CASTG	1 cut(s)	324
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	46
XapI	RAATTY	1 cut(s)	307
XspI	CTAG	1 cut(s)	542
ZraI	GACGTC	1 cut(s)	522
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.