RchiOBHm_Chr2g0132191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0020508
Physical Location & Seq
Reverse (-)
48622415 .. 48625587
3173 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50347

Sequence Viewer

Length: 633 bp
ATGGAATGCTGGAACCTGGAACCATGGCTTGAAAATAAAGGTCTTGGTGATGCGAACCAAGTGTTGGCATATTTTGCTGTCTCCAAGCTGGGAGAACCTCCAGTTGATGGAATAATCAATACCAATCCTGAAGGACGGACAGCATCATATGGGAAGTGGGCATCTGCAGTGGCTGACAGATTACATGCTGGAGGCCTCACTTGCAAGGTTCTTGGCAAGGAAGCATTTCAGAAGCAGATGTTGGAAAAGTTGATATGGATTTCAGCATTCATGCTTGTTGGAGCTCGTCATCCAGGAGCAACTGTAGGTGGTGTAGAGAAAGATACCGCTCTGAGGTTTCCAGCCTCATTGCAGAGCTTGCCACTGCAGCAGCTGCTGAGAAGTGATTGGTATTTGAAGGAGCCATGGAGGATAGATTATGTGCGTACTCACGAGCTGTTGCCCACTTTCCTACTGCAGTCAAAGAGAAATGGTTGGTTCTATTCCCTCTCTGAAAGGGCAATTGCAGAAGGAAAGCCTGATCCCTGCCCCCTACATACGGCATGGCTCAAAGAATTGAAAGTTGTTAAGAAAAAAACCAGACTTCAGCGTATGAATGATTTGGATCTCTCTGTTGGAGATATGAGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.69

Weight (kDa)

9.1

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020508)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0132191
rosa_multiflora Rmu_co8451607.1_g000001 Rmu_sc0009644.1_g000016
rosa_samantha Rh2BG362200 Rh2DG379300
rosa_wichuraiana Rw2G028920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 64, 107
AccBSI CCGCTC 1 cut(s) 329
AciI CCGC 1 cut(s) 327
AclWI GGATC 2 cut(s) 515, 612
AcuI CTGAAG 2 cut(s) 150, 569
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 4 cut(s) 64, 107, 333, 538
AgsI TTSAA 3 cut(s) 32, 397, 559
AjnI CCWGG 2 cut(s) 15, 292
AjuI GAANNNNNNNTTGG 4 cut(s) 47, 79, 224, 256
AluBI AGCT 5 cut(s) 88, 284, 357, 373, 436
AluI AGCT 5 cut(s) 88, 284, 357, 373, 436
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 2 cut(s) 515, 612
AlwNI CAGNNNCTG 3 cut(s) 173, 373, 376
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 3 cut(s) 367, 370, 373
Asp700I GAANNNNTTC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 286
BauI CACGAG 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 3 cut(s) 360, 379, 382
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 555
BciT130I CCWGG 2 cut(s) 17, 294
BcoDI GTCTC 1 cut(s) 85
BfmI CTRYAG 4 cut(s) 165, 303, 365, 455
BisI GCNGC 3 cut(s) 368, 371, 374
BlsI GCNGC 3 cut(s) 369, 372, 375
Bme1390I CCNGG 2 cut(s) 17, 294
BmiI GGNNCC 3 cut(s) 14, 21, 402
BmrFI CCNGG 2 cut(s) 17, 294
BmsI GCATC 3 cut(s) 40, 152, 170
BpmI CTGGAG 2 cut(s) 84, 210
BsaBI GATNNNNATC 1 cut(s) 603
BsaJI CCNNGG 2 cut(s) 23, 404
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 107, 333, 538
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 347
Bse8I GATNNNNATC 1 cut(s) 603
BseBI CCWGG 2 cut(s) 17, 294
BseDI CCNNGG 2 cut(s) 23, 404
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 4 cut(s) 64, 107, 333, 538
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 323, 368
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 3 cut(s) 360, 379, 382
BseYI CCCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 286
BslI CCNNNNNNNGG 4 cut(s) 64, 107, 333, 538
BsmAI GTCTC 1 cut(s) 85
BsmI GAATGC 2 cut(s) 11, 266
BsnI GGCC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 2 cut(s) 520, 604
Bsp19I CCATGG 2 cut(s) 23, 404
BspACI CCGC 1 cut(s) 327
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 2 cut(s) 324, 369
BspLI GGNNCC 3 cut(s) 14, 21, 402
BspMAI CTGCAG 3 cut(s) 169, 369, 459
BspPI GGATC 2 cut(s) 515, 612
BsrBI CCGCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 23, 404
BssMI GATC 2 cut(s) 520, 604
BssSI CACGAG 1 cut(s) 431
BssT1I CCWWGG 2 cut(s) 23, 404
Bst2BI CACGAG 1 cut(s) 431
Bst2UI CCWGG 2 cut(s) 17, 294
Bst4CI ACNGT 1 cut(s) 304
BstAPI GCANNNNNTGC 3 cut(s) 74, 358, 373
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 2 cut(s) 332, 377
BstDSI CCRYGG 2 cut(s) 23, 404
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 2 cut(s) 523, 607
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 520, 604
BstMWI GCNNNNNNNGC 5 cut(s) 74, 201, 358, 367, 373
BstNI CCWGG 2 cut(s) 17, 294
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 15, 292
BstSFI CTRYAG 4 cut(s) 165, 303, 365, 455
BstV1I GCAGC 3 cut(s) 360, 379, 382
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BsuRI GGCC 1 cut(s) 195
BtgI CCRYGG 2 cut(s) 23, 404
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 2 cut(s) 174, 362
BtsIMutI CAGTG 2 cut(s) 174, 362
Cac8I GCNNGC 1 cut(s) 359
CaiI CAGNNNCTG 3 cut(s) 173, 373, 376
Csp6I GTAC 1 cut(s) 426
CviAII CATG 5 cut(s) 24, 185, 271, 405, 543
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 2 cut(s) 332, 377
DpnI GATC 2 cut(s) 522, 606
DpnII GATC 2 cut(s) 520, 604
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 2 cut(s) 23, 404
Eco147I AGGCCT 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 2 cut(s) 150, 569
EcoICRI GAGCTC 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 15, 292
EcoT14I CCWWGG 2 cut(s) 23, 404
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 2 cut(s) 23, 404
FaeI CATG 5 cut(s) 27, 188, 274, 408, 546
FatI CATG 5 cut(s) 23, 184, 270, 404, 542
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 368, 371, 374
FokI GGATG 1 cut(s) 276
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 368, 371, 374
GluI GCNGC 3 cut(s) 368, 371, 374
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 2 cut(s) 84, 210
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 5 cut(s) 27, 188, 274, 408, 546
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 3 cut(s) 231, 333, 493
Hpy188III TCNNGA 2 cut(s) 128, 431
HpyAV CCTTC 3 cut(s) 125, 391, 503
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 6 cut(s) 167, 204, 352, 367, 457, 506
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 201, 358, 367, 373
HpyF3I CTNAG 2 cut(s) 332, 377
Hsp92II CATG 5 cut(s) 27, 188, 274, 408, 546
Kzo9I GATC 2 cut(s) 520, 604
LmnI GCTCC 3 cut(s) 281, 296, 400
Lsp1109I GCAGC 3 cut(s) 360, 379, 382
LweI GCATC 3 cut(s) 40, 152, 170
MalI GATC 2 cut(s) 522, 606
MbiI CCGCTC 1 cut(s) 329
MboI GATC 2 cut(s) 520, 604
MfeI CAATTG 1 cut(s) 501
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 2 cut(s) 501, 554
MmeI TCCRAC 3 cut(s) 222, 259, 595
MnlI CCTC 8 cut(s) 108, 185, 206, 327, 355, 402, 497, 618
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 2 cut(s) 567, 631
MspA1I CMGCKG 1 cut(s) 373
MspR9I CCNGG 2 cut(s) 17, 294
MunI CAATTG 1 cut(s) 501
Mva1269I GAATGC 2 cut(s) 11, 266
MvaI CCWGG 2 cut(s) 17, 294
MwoI GCNNNNNNNGC 5 cut(s) 74, 201, 358, 367, 373
NcoI CCATGG 2 cut(s) 23, 404
NdeI CATATG 1 cut(s) 148
NdeII GATC 2 cut(s) 520, 604
NlaIII CATG 5 cut(s) 27, 188, 274, 408, 546
NlaIV GGNNCC 3 cut(s) 14, 21, 402
NspI RCATGY 1 cut(s) 188
PceI AGGCCT 1 cut(s) 195
PctI GAATGC 2 cut(s) 11, 266
PdmI GAANNNNTTC 1 cut(s) 225
PflMI CCANNNNNTGG 2 cut(s) 64, 107
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 3 cut(s) 369, 372, 375
Psp124BI GAGCTC 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 15, 292
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 2 cut(s) 15, 292
PspN4I GGNNCC 3 cut(s) 14, 21, 402
PstI CTGCAG 3 cut(s) 169, 369, 459
PstNI CAGNNNCTG 3 cut(s) 173, 373, 376
PsuI RGATCY 1 cut(s) 604
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 2 cut(s) 567, 631
SatI GCNGC 3 cut(s) 368, 371, 374
Sau3AI GATC 2 cut(s) 520, 604
ScrFI CCNGG 2 cut(s) 17, 294
SduI GDGCHC 1 cut(s) 286
SfaNI GCATC 3 cut(s) 40, 152, 170
SfcI CTRYAG 4 cut(s) 165, 303, 365, 455
Sse9I AATT 2 cut(s) 501, 554
SseBI AGGCCT 1 cut(s) 195
SsiI CCGC 1 cut(s) 327
SstI GAGCTC 1 cut(s) 286
StuI AGGCCT 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 15, 292
StyI CCWWGG 2 cut(s) 23, 404
TaaI ACNGT 1 cut(s) 304
TasI AATT 2 cut(s) 501, 554
Tru1I TTAA 2 cut(s) 567, 631
Tru9I TTAA 2 cut(s) 567, 631
TscAI CASTG 2 cut(s) 174, 369
TseI GCWGC 3 cut(s) 367, 370, 373
TspDTI ATGAA 2 cut(s) 259, 608
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 2 cut(s) 174, 369
Van91I CCANNNNNTGG 2 cut(s) 64, 107
XceI RCATGY 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.