Rmu_sc0009644.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009644.1
OG0020508
Physical Location & Seq
Forward (+)
40122 .. 42319
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009644.1_g000016.1.cds

Sequence Viewer

Length: 558 bp
atgctggaaccatggcttgaaaataaaggtcttggtgatgcgaaccaagtgttggcatattttgctgtctccaagctgggagaacctccagttgatggaataatcaataccaatcctgaaggactgacagcatcatatgggaagtgggcatctgcagtggctgacagattacatgctggaggcctcacttgcaaggttcttggcaaggaagcatttcagaagcagatgttggaaaagttgatatggatttcagcattcatgcttgttggagctcgtcatccaggagcaactgtaagtggtgtagagaaagataccgctctgaggtttccagcctcattgcagagcttgccactgcagcagctgctgagaagtgattggtatttgaaggagccatggaggatagattatgtgcgtactcacgagctgttgcccactttcctaatgcagtcaaagagtttaaatagagaaatggttggttcgattccctctctgaaagggcaattgcagaaggaaagcctgacccctgtcccctacatacggcatggctcaaagaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

20.54

Weight (kDa)

9.19

Isoelectric Point (pI)

32.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020508)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0132191
rosa_multiflora Rmu_co8451607.1_g000001 Rmu_sc0009644.1_g000016
rosa_samantha Rh2BG362200 Rh2DG379300
rosa_wichuraiana Rw2G028920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 52, 95
AccBSI CCGCTC 1 cut(s) 317
AciI CCGC 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 4 cut(s) 52, 95, 321, 537
AgsI TTSAA 2 cut(s) 20, 385
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 4 cut(s) 35, 67, 212, 244
AluBI AGCT 5 cut(s) 76, 272, 345, 361, 424
AluI AGCT 5 cut(s) 76, 272, 345, 361, 424
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 73
AlwNI CAGNNNCTG 3 cut(s) 161, 361, 364
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 3 cut(s) 355, 358, 361
Asp700I GAANNNNTTC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 47
BanII GRGCYC 1 cut(s) 274
BauI CACGAG 1 cut(s) 419
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 3 cut(s) 348, 367, 370
BccI CCATC 1 cut(s) 89
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 73
BfmI CTRYAG 2 cut(s) 153, 353
BisI GCNGC 3 cut(s) 356, 359, 362
BlsI GCNGC 3 cut(s) 357, 360, 363
Bme1390I CCNGG 1 cut(s) 282
BmiI GGNNCC 2 cut(s) 9, 390
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 3 cut(s) 28, 140, 158
BoxI GACNNNNGTC 1 cut(s) 524
BpmI CTGGAG 2 cut(s) 72, 198
BsaJI CCNNGG 2 cut(s) 11, 392
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 95, 321, 537
Bse1I ACTGG 1 cut(s) 89
Bse3DI GCAATG 1 cut(s) 335
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 11, 392
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 4 cut(s) 52, 95, 321, 537
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 2 cut(s) 311, 356
BseNI ACTGG 1 cut(s) 89
BseXI GCAGC 3 cut(s) 348, 367, 370
BseYI CCCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 274
BslFI GGGAC 1 cut(s) 512
BslI CCNNNNNNNGG 4 cut(s) 52, 95, 321, 537
BsmAI GTCTC 1 cut(s) 73
BsmFI GGGAC 1 cut(s) 512
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 274
Bsp19I CCATGG 2 cut(s) 11, 392
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 312, 357
BspLI GGNNCC 2 cut(s) 9, 390
BspMAI CTGCAG 2 cut(s) 157, 357
BsrBI CCGCTC 1 cut(s) 317
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 2 cut(s) 11, 392
BssSI CACGAG 1 cut(s) 419
BssT1I CCWWGG 2 cut(s) 11, 392
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 292
BstAPI GCANNNNNTGC 3 cut(s) 62, 346, 361
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 2 cut(s) 320, 365
BstDSI CCRYGG 2 cut(s) 11, 392
BstF5I GGATG 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 73
BstMWI GCNNNNNNNGC 5 cut(s) 62, 189, 346, 355, 361
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 176
BstPAI GACNNNNGTC 1 cut(s) 524
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 2 cut(s) 153, 353
BstV1I GCAGC 3 cut(s) 348, 367, 370
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 2 cut(s) 11, 392
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 2 cut(s) 162, 350
BtsIMutI CAGTG 2 cut(s) 162, 350
Cac8I GCNNGC 1 cut(s) 347
CaiI CAGNNNCTG 3 cut(s) 161, 361, 364
Csp6I GTAC 1 cut(s) 414
CviAII CATG 5 cut(s) 12, 173, 259, 393, 542
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 2 cut(s) 320, 365
DraI TTTAAA 1 cut(s) 459
Ecl136II GAGCTC 1 cut(s) 272
Eco130I CCWWGG 2 cut(s) 11, 392
Eco147I AGGCCT 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 2 cut(s) 11, 392
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 2 cut(s) 11, 392
FaeI CATG 5 cut(s) 15, 176, 262, 396, 545
FaqI GGGAC 1 cut(s) 512
FatI CATG 5 cut(s) 11, 172, 258, 392, 541
FauNDI CATATG 1 cut(s) 136
Fnu4HI GCNGC 3 cut(s) 356, 359, 362
FokI GGATG 1 cut(s) 264
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 3 cut(s) 356, 359, 362
GluI GCNGC 3 cut(s) 356, 359, 362
GsaI CCCAGC 1 cut(s) 80
GsuI CTGGAG 2 cut(s) 72, 198
HaeIII GGCC 1 cut(s) 183
Hin1II CATG 5 cut(s) 15, 176, 262, 396, 545
HinfI GANTC 1 cut(s) 481
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 3 cut(s) 219, 321, 492
Hpy188III TCNNGA 2 cut(s) 116, 419
HpyAV CCTTC 3 cut(s) 113, 379, 502
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4V TGCA 6 cut(s) 155, 192, 340, 355, 445, 505
HpyF10VI GCNNNNNNNGC 5 cut(s) 62, 189, 346, 355, 361
HpyF3I CTNAG 2 cut(s) 320, 365
Hsp92II CATG 5 cut(s) 15, 176, 262, 396, 545
LmnI GCTCC 3 cut(s) 269, 284, 388
LpnPI CCDG 9 cut(s) 62, 102, 129, 162, 267, 294, 342, 530, 537
Lsp1109I GCAGC 3 cut(s) 348, 367, 370
LweI GCATC 3 cut(s) 28, 140, 158
MbiI CCGCTC 1 cut(s) 317
MfeI CAATTG 1 cut(s) 500
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 2 cut(s) 500, 553
MmeI TCCRAC 2 cut(s) 210, 247
MnlI CCTC 7 cut(s) 96, 173, 194, 315, 343, 390, 496
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 1 cut(s) 458
MspA1I CMGCKG 1 cut(s) 361
MspR9I CCNGG 1 cut(s) 282
MunI CAATTG 1 cut(s) 500
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 5 cut(s) 62, 189, 346, 355, 361
NcoI CCATGG 2 cut(s) 11, 392
NdeI CATATG 1 cut(s) 136
NlaIII CATG 5 cut(s) 15, 176, 262, 396, 545
NlaIV GGNNCC 2 cut(s) 9, 390
NspI RCATGY 1 cut(s) 176
PceI AGGCCT 1 cut(s) 183
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 1 cut(s) 481
PflMI CCANNNNNTGG 2 cut(s) 52, 95
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 3 cut(s) 357, 360, 363
PshAI GACNNNNGTC 1 cut(s) 524
Psp124BI GAGCTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 2 cut(s) 9, 390
PstI CTGCAG 2 cut(s) 157, 357
PstNI CAGNNNCTG 3 cut(s) 161, 361, 364
PvuII CAGCTG 1 cut(s) 361
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SacI GAGCTC 1 cut(s) 274
SaqAI TTAA 1 cut(s) 458
SatI GCNGC 3 cut(s) 356, 359, 362
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 274
SetI ASST 9 cut(s) 31, 78, 88, 198, 274, 326, 347, 363, 426
SfaNI GCATC 3 cut(s) 28, 140, 158
SfcI CTRYAG 2 cut(s) 153, 353
Sse9I AATT 2 cut(s) 500, 553
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 1 cut(s) 315
SstI GAGCTC 1 cut(s) 274
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 2 cut(s) 11, 392
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 1 cut(s) 479
TasI AATT 2 cut(s) 500, 553
TfiI GAWTC 1 cut(s) 481
Tru1I TTAA 1 cut(s) 458
Tru9I TTAA 1 cut(s) 458
TscAI CASTG 2 cut(s) 162, 357
TseI GCWGC 3 cut(s) 355, 358, 361
TspDTI ATGAA 1 cut(s) 247
TspRI CASTG 2 cut(s) 162, 357
Van91I CCANNNNNTGG 2 cut(s) 52, 95
XceI RCATGY 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.