Rh2BG362200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0020508
Physical Location & Seq
Reverse (-)
50168175 .. 50170395
2221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG362200.1

Sequence Viewer

Length: 570 bp
ATGGAATGCTGGAACCTGGAACCATGGCTTGAAAATAAAGGTCTTGGTGATGCGAACCAAGTGTTGGCATATTTTGCTGTCTCCAAGCTGGGAGAACCTCCAGTTGATGGAATAATCAATACCAATCCTGAAGGACGGACAGCATCATATGGGAAGTGGGCATCTGCAGTGGCTGACAGATTACATGCTGGAGGCCTCACTTGCAAGGTTCTTGGCAAGGAAGCATTTCAGAAGCAGATGTTGGAAAAGTTGATATGGATTTCAGCATTCATGCTTGTTGGAGCTCGTCATCCAGGAGCAACTGTAGGTGGTGTAGAGAAAGATACCGCTCTGAGGTTTCCAGCCTCATTGCAGAGCTTGCCACTGCAGCAGCTGCTGAGAAGTGATTGGTATTTGAAGGAGCCATGGAGGATAGATTATGTGCGTACTCACGAGCTGTTGCCCACTTTCCTACTGCAGTCAAAGAGTTTAAATAGAGAAATGGTTGGTTCTATTCCCTCTCTGAAAGGGCAATTGCAGAAGGAAAGCCTGATCCCTGCCCCCTACATACGGCATGGCTCAAAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

21.05

Weight (kDa)

9.08

Isoelectric Point (pI)

38.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020508)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0132191
rosa_multiflora Rmu_co8451607.1_g000001 Rmu_sc0009644.1_g000016
rosa_samantha Rh2BG362200 Rh2DG379300
rosa_wichuraiana Rw2G028920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 64, 107
AccBSI CCGCTC 1 cut(s) 329
AciI CCGC 1 cut(s) 327
AclWI GGATC 1 cut(s) 526
AcuI CTGAAG 1 cut(s) 150
AfaI GTAC 1 cut(s) 427
AfiI CCNNNNNNNGG 4 cut(s) 64, 107, 333, 549
AgsI TTSAA 2 cut(s) 32, 397
AjnI CCWGG 2 cut(s) 15, 292
AjuI GAANNNNNNNTTGG 4 cut(s) 47, 79, 224, 256
AluBI AGCT 5 cut(s) 88, 284, 357, 373, 436
AluI AGCT 5 cut(s) 88, 284, 357, 373, 436
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 1 cut(s) 526
AlwNI CAGNNNCTG 3 cut(s) 173, 373, 376
AoxI GGCC 1 cut(s) 193
ApeKI GCWGC 3 cut(s) 367, 370, 373
Asp700I GAANNNNTTC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 286
BauI CACGAG 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 3 cut(s) 360, 379, 382
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 566
BciT130I CCWGG 2 cut(s) 17, 294
BcoDI GTCTC 1 cut(s) 85
BfmI CTRYAG 4 cut(s) 165, 303, 365, 455
BisI GCNGC 3 cut(s) 368, 371, 374
BlsI GCNGC 3 cut(s) 369, 372, 375
Bme1390I CCNGG 2 cut(s) 17, 294
BmiI GGNNCC 3 cut(s) 14, 21, 402
BmrFI CCNGG 2 cut(s) 17, 294
BmsI GCATC 3 cut(s) 40, 152, 170
BpmI CTGGAG 2 cut(s) 84, 210
BsaJI CCNNGG 2 cut(s) 23, 404
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 107, 333, 549
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 347
BseBI CCWGG 2 cut(s) 17, 294
BseDI CCNNGG 2 cut(s) 23, 404
BseGI GGATG 1 cut(s) 289
BseLI CCNNNNNNNGG 4 cut(s) 64, 107, 333, 549
BseMI GCAATG 1 cut(s) 347
BseMII CTCAG 2 cut(s) 323, 368
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 3 cut(s) 360, 379, 382
BseYI CCCAGC 1 cut(s) 88
BshFI GGCC 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 286
BslI CCNNNNNNNGG 4 cut(s) 64, 107, 333, 549
BsmAI GTCTC 1 cut(s) 85
BsmI GAATGC 2 cut(s) 11, 266
BsnI GGCC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 531
Bsp19I CCATGG 2 cut(s) 23, 404
BspACI CCGC 1 cut(s) 327
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 2 cut(s) 324, 369
BspLI GGNNCC 3 cut(s) 14, 21, 402
BspMAI CTGCAG 3 cut(s) 169, 369, 459
BspPI GGATC 1 cut(s) 526
BsrBI CCGCTC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 347
BsrI ACTGG 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 23, 404
BssMI GATC 1 cut(s) 531
BssSI CACGAG 1 cut(s) 431
BssT1I CCWWGG 2 cut(s) 23, 404
Bst2BI CACGAG 1 cut(s) 431
Bst2UI CCWGG 2 cut(s) 17, 294
Bst4CI ACNGT 1 cut(s) 304
BstAPI GCANNNNNTGC 3 cut(s) 74, 358, 373
BstC8I GCNNGC 1 cut(s) 359
BstDEI CTNAG 2 cut(s) 332, 377
BstDSI CCRYGG 2 cut(s) 23, 404
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 1 cut(s) 534
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 1 cut(s) 531
BstMWI GCNNNNNNNGC 5 cut(s) 74, 201, 358, 367, 373
BstNI CCWGG 2 cut(s) 17, 294
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 2 cut(s) 15, 292
BstSFI CTRYAG 4 cut(s) 165, 303, 365, 455
BstV1I GCAGC 3 cut(s) 360, 379, 382
BsuRI GGCC 1 cut(s) 195
BtgI CCRYGG 2 cut(s) 23, 404
BtsCI GGATG 1 cut(s) 289
BtsI GCAGTG 2 cut(s) 174, 362
BtsIMutI CAGTG 2 cut(s) 174, 362
Cac8I GCNNGC 1 cut(s) 359
CaiI CAGNNNCTG 3 cut(s) 173, 373, 376
Csp6I GTAC 1 cut(s) 426
CviAII CATG 5 cut(s) 24, 185, 271, 405, 554
CviQI GTAC 1 cut(s) 426
DdeI CTNAG 2 cut(s) 332, 377
DpnI GATC 1 cut(s) 533
DpnII GATC 1 cut(s) 531
DraI TTTAAA 1 cut(s) 471
Ecl136II GAGCTC 1 cut(s) 284
Eco130I CCWWGG 2 cut(s) 23, 404
Eco147I AGGCCT 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 150
EcoICRI GAGCTC 1 cut(s) 284
EcoRII CCWGG 2 cut(s) 15, 292
EcoT14I CCWWGG 2 cut(s) 23, 404
EcoT38I GRGCYC 1 cut(s) 286
ErhI CCWWGG 2 cut(s) 23, 404
FaeI CATG 5 cut(s) 27, 188, 274, 408, 557
FatI CATG 5 cut(s) 23, 184, 270, 404, 553
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 3 cut(s) 368, 371, 374
FokI GGATG 1 cut(s) 276
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 3 cut(s) 368, 371, 374
GluI GCNGC 3 cut(s) 368, 371, 374
GsaI CCCAGC 1 cut(s) 92
GsuI CTGGAG 2 cut(s) 84, 210
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 5 cut(s) 27, 188, 274, 408, 557
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 3 cut(s) 231, 333, 504
Hpy188III TCNNGA 2 cut(s) 128, 431
HpyAV CCTTC 3 cut(s) 125, 391, 514
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 6 cut(s) 167, 204, 352, 367, 457, 517
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 201, 358, 367, 373
HpyF3I CTNAG 2 cut(s) 332, 377
Hsp92II CATG 5 cut(s) 27, 188, 274, 408, 557
Kzo9I GATC 1 cut(s) 531
LmnI GCTCC 3 cut(s) 281, 296, 400
Lsp1109I GCAGC 3 cut(s) 360, 379, 382
LweI GCATC 3 cut(s) 40, 152, 170
MalI GATC 1 cut(s) 533
MbiI CCGCTC 1 cut(s) 329
MboI GATC 1 cut(s) 531
MfeI CAATTG 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 2 cut(s) 512, 565
MmeI TCCRAC 2 cut(s) 222, 259
MnlI CCTC 7 cut(s) 108, 185, 206, 327, 355, 402, 508
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 373
MspR9I CCNGG 2 cut(s) 17, 294
MunI CAATTG 1 cut(s) 512
Mva1269I GAATGC 2 cut(s) 11, 266
MvaI CCWGG 2 cut(s) 17, 294
MwoI GCNNNNNNNGC 5 cut(s) 74, 201, 358, 367, 373
NcoI CCATGG 2 cut(s) 23, 404
NdeI CATATG 1 cut(s) 148
NdeII GATC 1 cut(s) 531
NlaIII CATG 5 cut(s) 27, 188, 274, 408, 557
NlaIV GGNNCC 3 cut(s) 14, 21, 402
NspI RCATGY 1 cut(s) 188
PceI AGGCCT 1 cut(s) 195
PctI GAATGC 2 cut(s) 11, 266
PdmI GAANNNNTTC 1 cut(s) 225
PflMI CCANNNNNTGG 2 cut(s) 64, 107
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 3 cut(s) 369, 372, 375
Psp124BI GAGCTC 1 cut(s) 286
Psp6I CCWGG 2 cut(s) 15, 292
PspFI CCCAGC 1 cut(s) 88
PspGI CCWGG 2 cut(s) 15, 292
PspN4I GGNNCC 3 cut(s) 14, 21, 402
PstI CTGCAG 3 cut(s) 169, 369, 459
PstNI CAGNNNCTG 3 cut(s) 173, 373, 376
PvuII CAGCTG 1 cut(s) 373
RsaI GTAC 1 cut(s) 427
RsaNI GTAC 1 cut(s) 426
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 470
SatI GCNGC 3 cut(s) 368, 371, 374
Sau3AI GATC 1 cut(s) 531
ScrFI CCNGG 2 cut(s) 17, 294
SduI GDGCHC 1 cut(s) 286
SfaNI GCATC 3 cut(s) 40, 152, 170
SfcI CTRYAG 4 cut(s) 165, 303, 365, 455
Sse9I AATT 2 cut(s) 512, 565
SseBI AGGCCT 1 cut(s) 195
SsiI CCGC 1 cut(s) 327
SstI GAGCTC 1 cut(s) 286
StuI AGGCCT 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 15, 292
StyI CCWWGG 2 cut(s) 23, 404
TaaI ACNGT 1 cut(s) 304
TasI AATT 2 cut(s) 512, 565
Tru1I TTAA 1 cut(s) 470
Tru9I TTAA 1 cut(s) 470
TscAI CASTG 2 cut(s) 174, 369
TseI GCWGC 3 cut(s) 367, 370, 373
TspDTI ATGAA 1 cut(s) 259
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 2 cut(s) 174, 369
Van91I CCANNNNNTGG 2 cut(s) 64, 107
XceI RCATGY 1 cut(s) 188
XmnI GAANNNNTTC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.