Rw2G028920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0020508
Physical Location & Seq
Reverse (-)
46419287 .. 46422640
3354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028920.1

Sequence Viewer

Length: 567 bp
ATGGAACAAATGGAATGCTGGAACCTGGAACCATGGCTTGAAAATAAAGGTCTTGGTGATGCGAACCAAGTGTTGGCATATTTTGCTGTCTCCAAGCTGGGAGAACCTCCAGTTGATGGAATAATCAATACCAATCCTGAAGGACGGACAGCATCATATGGGAAGTGGGCATCTGCAGTGGCTGACAGATTACATGCTGGAGGCCTCACTTGCAAGGTTCTTGGCAAGGAAGCATTTCAGAAGCAGATGTTGGAAAAGTTGATATGGATTTCAGCATTCATGCTTGTTGGAGCTCGTCATCCAGGAGCAACTGTAGGTGGTGTAGAGAAAGATACCGCTCTGAGGTTTCCAGCCTCATTGCAGAGCTTGCCACTGCAGCAGCTGCTGAGAAGTGATTGGTATTTGAAGGAGCCATGGAGGATAGATTATGTGCGTACTCACGAGCTGTTGCCCACTTTCCTACTGCAGTCAAAGAGTTTAAATAGAGAAATGGTTGGTTCTATTCCCTCTCTGAAAGGGTCCCTGCCCCCTACATACGGCATGGCTCAAAGAATTGAAAGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

188

Amino Acids

20.91

Weight (kDa)

7.71

Isoelectric Point (pI)

41.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020508)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0132191
rosa_multiflora Rmu_co8451607.1_g000001 Rmu_sc0009644.1_g000016
rosa_samantha Rh2BG362200 Rh2DG379300
rosa_wichuraiana Rw2G028920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 73, 116
AccBSI CCGCTC 1 cut(s) 338
AciI CCGC 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 436
AfiI CCNNNNNNNGG 4 cut(s) 73, 116, 342, 536
AgsI TTSAA 3 cut(s) 41, 406, 557
AjnI CCWGG 2 cut(s) 24, 301
AjuI GAANNNNNNNTTGG 4 cut(s) 56, 88, 233, 265
AluBI AGCT 5 cut(s) 97, 293, 366, 382, 445
AluI AGCT 5 cut(s) 97, 293, 366, 382, 445
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 1 cut(s) 94
AlwNI CAGNNNCTG 3 cut(s) 182, 382, 385
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 3 cut(s) 376, 379, 382
Asp700I GAANNNNTTC 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 519
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 519
BanII GRGCYC 1 cut(s) 295
BauI CACGAG 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 3 cut(s) 369, 388, 391
BccI CCATC 1 cut(s) 110
BceAI ACGGC 1 cut(s) 553
BciT130I CCWGG 2 cut(s) 26, 303
BcoDI GTCTC 1 cut(s) 94
BfmI CTRYAG 4 cut(s) 174, 312, 374, 464
BisI GCNGC 3 cut(s) 377, 380, 383
BlsI GCNGC 3 cut(s) 378, 381, 384
Bme1390I CCNGG 2 cut(s) 26, 303
Bme18I GGWCC 1 cut(s) 519
BmgT120I GGNCC 1 cut(s) 519
BmiI GGNNCC 5 cut(s) 23, 30, 411, 520, 521
BmrFI CCNGG 2 cut(s) 26, 303
BmsI GCATC 3 cut(s) 49, 161, 179
BpmI CTGGAG 2 cut(s) 93, 219
BsaJI CCNNGG 2 cut(s) 32, 413
BsaXI ACNNNNNCTCC 2 cut(s) 297, 327
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 116, 342, 536
Bse1I ACTGG 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 356
BseBI CCWGG 2 cut(s) 26, 303
BseDI CCNNGG 2 cut(s) 32, 413
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 4 cut(s) 73, 116, 342, 536
BseMI GCAATG 1 cut(s) 356
BseMII CTCAG 2 cut(s) 332, 377
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 3 cut(s) 369, 388, 391
BseYI CCCAGC 1 cut(s) 97
BshFI GGCC 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 295
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 4 cut(s) 73, 116, 342, 536
BsmAI GTCTC 1 cut(s) 94
BsmFI GGGAC 1 cut(s) 505
BsmI GAATGC 2 cut(s) 20, 275
BsnI GGCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 295
Bsp19I CCATGG 2 cut(s) 32, 413
BspACI CCGC 1 cut(s) 336
BspANI GGCC 1 cut(s) 204
BspCNI CTCAG 2 cut(s) 333, 378
BspLI GGNNCC 5 cut(s) 23, 30, 411, 520, 521
BspMAI CTGCAG 3 cut(s) 178, 378, 468
BsrBI CCGCTC 1 cut(s) 338
BsrDI GCAATG 1 cut(s) 356
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 2 cut(s) 32, 413
BssSI CACGAG 1 cut(s) 440
BssT1I CCWWGG 2 cut(s) 32, 413
Bst2BI CACGAG 1 cut(s) 440
Bst2UI CCWGG 2 cut(s) 26, 303
Bst4CI ACNGT 1 cut(s) 313
BstAPI GCANNNNNTGC 3 cut(s) 83, 367, 382
BstC8I GCNNGC 1 cut(s) 368
BstDEI CTNAG 2 cut(s) 341, 386
BstDSI CCRYGG 2 cut(s) 32, 413
BstF5I GGATG 1 cut(s) 298
BstMAI GTCTC 1 cut(s) 94
BstMWI GCNNNNNNNGC 5 cut(s) 83, 210, 367, 376, 382
BstNI CCWGG 2 cut(s) 26, 303
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 2 cut(s) 24, 301
BstSFI CTRYAG 4 cut(s) 174, 312, 374, 464
BstV1I GCAGC 3 cut(s) 369, 388, 391
BsuRI GGCC 1 cut(s) 204
BtgI CCRYGG 2 cut(s) 32, 413
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 2 cut(s) 183, 371
BtsIMutI CAGTG 2 cut(s) 183, 371
Cac8I GCNNGC 1 cut(s) 368
CaiI CAGNNNCTG 3 cut(s) 182, 382, 385
Cfr13I GGNCC 1 cut(s) 519
Csp6I GTAC 1 cut(s) 435
CviAII CATG 5 cut(s) 33, 194, 280, 414, 541
CviQI GTAC 1 cut(s) 435
DdeI CTNAG 2 cut(s) 341, 386
DraI TTTAAA 1 cut(s) 480
Ecl136II GAGCTC 1 cut(s) 293
Eco130I CCWWGG 2 cut(s) 32, 413
Eco147I AGGCCT 1 cut(s) 204
Eco24I GRGCYC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 519
Eco53kI GAGCTC 1 cut(s) 293
Eco57I CTGAAG 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 293
EcoO109I RGGNCCY 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 24, 301
EcoT14I CCWWGG 2 cut(s) 32, 413
EcoT38I GRGCYC 1 cut(s) 295
ErhI CCWWGG 2 cut(s) 32, 413
FaeI CATG 5 cut(s) 36, 197, 283, 417, 544
FaqI GGGAC 1 cut(s) 505
FatI CATG 5 cut(s) 32, 193, 279, 413, 540
FauNDI CATATG 1 cut(s) 157
Fnu4HI GCNGC 3 cut(s) 377, 380, 383
FokI GGATG 1 cut(s) 285
FriOI GRGCYC 1 cut(s) 295
Fsp4HI GCNGC 3 cut(s) 377, 380, 383
GluI GCNGC 3 cut(s) 377, 380, 383
GsaI CCCAGC 1 cut(s) 101
GsuI CTGGAG 2 cut(s) 93, 219
HaeIII GGCC 1 cut(s) 204
Hin1II CATG 5 cut(s) 36, 197, 283, 417, 544
HphI GGTGA 1 cut(s) 68
Hpy188I TCNGA 3 cut(s) 240, 342, 513
Hpy188III TCNNGA 2 cut(s) 137, 440
HpyAV CCTTC 2 cut(s) 134, 400
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4V TGCA 5 cut(s) 176, 213, 361, 376, 466
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 210, 367, 376, 382
HpyF3I CTNAG 2 cut(s) 341, 386
Hsp92II CATG 5 cut(s) 36, 197, 283, 417, 544
KflI GGGWCCC 1 cut(s) 519
LmnI GCTCC 3 cut(s) 290, 305, 409
Lsp1109I GCAGC 3 cut(s) 369, 388, 391
LweI GCATC 3 cut(s) 49, 161, 179
MbiI CCGCTC 1 cut(s) 338
MhlI GDGCHC 1 cut(s) 295
MluCI AATT 1 cut(s) 552
MmeI TCCRAC 2 cut(s) 231, 268
MnlI CCTC 7 cut(s) 117, 194, 215, 336, 364, 411, 517
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 2 cut(s) 479, 565
MspA1I CMGCKG 1 cut(s) 382
MspR9I CCNGG 2 cut(s) 26, 303
Mva1269I GAATGC 2 cut(s) 20, 275
MvaI CCWGG 2 cut(s) 26, 303
MwoI GCNNNNNNNGC 5 cut(s) 83, 210, 367, 376, 382
NcoI CCATGG 2 cut(s) 32, 413
NdeI CATATG 1 cut(s) 157
NlaIII CATG 5 cut(s) 36, 197, 283, 417, 544
NlaIV GGNNCC 5 cut(s) 23, 30, 411, 520, 521
NspI RCATGY 1 cut(s) 197
PceI AGGCCT 1 cut(s) 204
PctI GAATGC 2 cut(s) 20, 275
PdmI GAANNNNTTC 1 cut(s) 234
PflMI CCANNNNNTGG 2 cut(s) 73, 116
PfoI TCCNGGA 1 cut(s) 301
PkrI GCNGC 3 cut(s) 378, 381, 384
PpuMI RGGWCCY 1 cut(s) 519
Psp124BI GAGCTC 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 519
Psp6I CCWGG 2 cut(s) 24, 301
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 2 cut(s) 24, 301
PspN4I GGNNCC 5 cut(s) 23, 30, 411, 520, 521
PspPI GGNCC 1 cut(s) 519
PspPPI RGGWCCY 1 cut(s) 519
PstI CTGCAG 3 cut(s) 178, 378, 468
PstNI CAGNNNCTG 3 cut(s) 182, 382, 385
PvuII CAGCTG 1 cut(s) 382
RsaI GTAC 1 cut(s) 436
RsaNI GTAC 1 cut(s) 435
SacI GAGCTC 1 cut(s) 295
SaqAI TTAA 2 cut(s) 479, 565
SatI GCNGC 3 cut(s) 377, 380, 383
Sau96I GGNCC 1 cut(s) 519
ScrFI CCNGG 2 cut(s) 26, 303
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 3 cut(s) 49, 161, 179
SfcI CTRYAG 4 cut(s) 174, 312, 374, 464
SinI GGWCC 1 cut(s) 519
Sse9I AATT 1 cut(s) 552
SseBI AGGCCT 1 cut(s) 204
SsiI CCGC 1 cut(s) 336
SstI GAGCTC 1 cut(s) 295
StuI AGGCCT 1 cut(s) 204
StyD4I CCNGG 2 cut(s) 24, 301
StyI CCWWGG 2 cut(s) 32, 413
TaaI ACNGT 1 cut(s) 313
TasI AATT 1 cut(s) 552
Tru1I TTAA 2 cut(s) 479, 565
Tru9I TTAA 2 cut(s) 479, 565
TscAI CASTG 2 cut(s) 183, 378
TseI GCWGC 3 cut(s) 376, 379, 382
TspDTI ATGAA 1 cut(s) 268
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 2 cut(s) 183, 378
Van91I CCANNNNNTGG 2 cut(s) 73, 116
VpaK11BI GGWCC 1 cut(s) 519
XceI RCATGY 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.