Rmu_co8451607.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8451607.1
OG0020508
Physical Location & Seq
Reverse (-)
1 .. 1299
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8451607.1_g000001.1.cds

Sequence Viewer

Length: 337 bp
atgctggaaccatggcttgaaaataaaggtcttggtgatgcgaaccaagtgttggcatattttgctgtctccaagctgggagaacctccagttgatggaataatcaataccaatcctgaaggactgacagcatcatatgggaagtgggcatctgcagtggctgacagattacatgctggaggcctcacttgcaaggttcttggcaaggaagcatttcagaagcagatgttggaaaagttgatatggatttcagcattcatgcttgttggagctcgtcatccaggagcaactgtaagtggtgtagagaaagataccgctctgagaacactgtcctttt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.01

Weight (kDa)

6.72

Isoelectric Point (pI)

9.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020508)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0132191
rosa_multiflora Rmu_co8451607.1_g000001 Rmu_sc0009644.1_g000016
rosa_samantha Rh2BG362200 Rh2DG379300
rosa_wichuraiana Rw2G028920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 52, 95
AccBSI CCGCTC 1 cut(s) 317
AciI CCGC 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 138
AfiI CCNNNNNNNGG 2 cut(s) 52, 95
AgsI TTSAA 1 cut(s) 20
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 4 cut(s) 35, 67, 212, 244
AluBI AGCT 2 cut(s) 76, 272
AluI AGCT 2 cut(s) 76, 272
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 73
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 1 cut(s) 181
Asp700I GAANNNNTTC 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 47
BanII GRGCYC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 274
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 73
BfmI CTRYAG 1 cut(s) 153
Bme1390I CCNGG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 3 cut(s) 28, 140, 158
BpmI CTGGAG 2 cut(s) 72, 198
BsaJI CCNNGG 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 276, 306
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 95
Bse1I ACTGG 1 cut(s) 89
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 52, 95
BseMII CTCAG 1 cut(s) 311
BseNI ACTGG 1 cut(s) 89
BseYI CCCAGC 1 cut(s) 76
BshFI GGCC 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 274
BslI CCNNNNNNNGG 2 cut(s) 52, 95
BsmAI GTCTC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 254
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 274
Bsp19I CCATGG 1 cut(s) 11
BspACI CCGC 1 cut(s) 315
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 157
BsrBI CCGCTC 1 cut(s) 317
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 11
BssT1I CCWWGG 1 cut(s) 11
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 2 cut(s) 292, 330
BstAPI GCANNNNNTGC 1 cut(s) 62
BstDEI CTNAG 1 cut(s) 320
BstDSI CCRYGG 1 cut(s) 11
BstF5I GGATG 1 cut(s) 277
BstMAI GTCTC 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 62, 189
BstNI CCWGG 1 cut(s) 282
BstNSI RCATGY 1 cut(s) 176
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 1 cut(s) 153
BsuRI GGCC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 11
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 326
CaiI CAGNNNCTG 1 cut(s) 161
CviAII CATG 3 cut(s) 12, 173, 259
CviJI RGCY 5 cut(s) 16, 76, 161, 183, 272
CviKI_1 RGCY 5 cut(s) 16, 76, 161, 183, 272
DdeI CTNAG 1 cut(s) 320
Ecl136II GAGCTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 11
Eco147I AGGCCT 1 cut(s) 183
Eco24I GRGCYC 1 cut(s) 274
Eco53kI GAGCTC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 11
FaeI CATG 3 cut(s) 15, 176, 262
FaiI YATR 7 cut(s) 13, 58, 136, 138, 174, 244, 260
FatI CATG 3 cut(s) 11, 172, 258
FauNDI CATATG 1 cut(s) 136
FokI GGATG 1 cut(s) 264
FriOI GRGCYC 1 cut(s) 274
GsaI CCCAGC 1 cut(s) 80
GsuI CTGGAG 2 cut(s) 72, 198
HaeIII GGCC 1 cut(s) 183
Hin1II CATG 3 cut(s) 15, 176, 262
HphI GGTGA 1 cut(s) 47
Hpy188I TCNGA 2 cut(s) 219, 321
Hpy188III TCNNGA 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 2 cut(s) 292, 330
HpyCH4V TGCA 2 cut(s) 155, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 189
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 3 cut(s) 15, 176, 262
LmnI GCTCC 2 cut(s) 269, 284
LpnPI CCDG 6 cut(s) 62, 102, 129, 162, 267, 294
LweI GCATC 3 cut(s) 28, 140, 158
MbiI CCGCTC 1 cut(s) 317
MhlI GDGCHC 1 cut(s) 274
MmeI TCCRAC 2 cut(s) 210, 247
MnlI CCTC 3 cut(s) 96, 173, 194
MroXI GAANNNNTTC 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 282
Mva1269I GAATGC 1 cut(s) 254
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 62, 189
NcoI CCATGG 1 cut(s) 11
NdeI CATATG 1 cut(s) 136
NlaIII CATG 3 cut(s) 15, 176, 262
NlaIV GGNNCC 1 cut(s) 9
NspI RCATGY 1 cut(s) 176
PceI AGGCCT 1 cut(s) 183
PctI GAATGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 213
PflMI CCANNNNNTGG 2 cut(s) 52, 95
PfoI TCCNGGA 1 cut(s) 280
Psp124BI GAGCTC 1 cut(s) 274
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 9
PstI CTGCAG 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 274
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 274
SetI ASST 5 cut(s) 31, 78, 88, 198, 274
SfaNI GCATC 3 cut(s) 28, 140, 158
SfcI CTRYAG 1 cut(s) 153
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 1 cut(s) 315
SstI GAGCTC 1 cut(s) 274
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 11
TaaI ACNGT 2 cut(s) 292, 330
TscAI CASTG 2 cut(s) 162, 333
TspDTI ATGAA 1 cut(s) 247
TspRI CASTG 2 cut(s) 162, 333
Van91I CCANNNNNTGG 2 cut(s) 52, 95
XceI RCATGY 1 cut(s) 176
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.