Rh2DG379300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0020508
Physical Location & Seq
Reverse (-)
54444845 .. 54446787
1943 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG379300.1

Sequence Viewer

Length: 588 bp
ATGGCCAACATGACACTCACACTCCCCATTTCCACTCTCTTCCACCTCACGACAAAACCCACTTCGAGACTCGCTCTAAGAATCAAAGCCAAAGCCTCCAGAGCCACTGCCATGGCCTCCATATCCACCAAAACCAAGGTGGTGCCTGCAGTCATAGTCGGCGCCGGAAGGGTTGGGAAGGCCTTAAATGACATGGGCAATGAAATGATGATCTCGAGGCTGTTCTTGAGTCTACTCCAAGGCCCAGATGGAACAAATGGAATGCTGGAACCATGGCTTGAAAATAAAGGTCTTGGTGATGCGAACCAAGTGTTGGCATATTTTGCTGTCTCCAAGCTGGGAGAACCTCCAGTTGATGGAATAATCAATACCAATCCTGAAGGACTGACAGCATCATATGGGAAGTGGGCATCTGCAGTGGCTGACAGATTACATGCTGGAGGCCTCACTTGCAAGGTTCTTGGCAAGGAAGCATTTCAGAAGCAGATGTTGGAAAAGTTGATATGGATTTCAGCATTCATGCTTGTTGGAGCTCGTCATCCAGGAGCAACTGTAGGTGGTGTAGAGAAAGATACCGCTCTGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

20.67

Weight (kDa)

9.79

Isoelectric Point (pI)

13.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020508)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0132191
rosa_multiflora Rmu_co8451607.1_g000001 Rmu_sc0009644.1_g000016
rosa_samantha Rh2BG362200 Rh2DG379300
rosa_wichuraiana Rw2G028920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 142, 161
AccB7I CCANNNNNTGG 2 cut(s) 313, 356
AccBSI CCGCTC 1 cut(s) 578
AccI GTMKAC 1 cut(s) 232
AciI CCGC 1 cut(s) 576
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 399
AcyI GRCGYC 1 cut(s) 162
AfiI CCNNNNNNNGG 3 cut(s) 313, 356, 582
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 1 cut(s) 541
AjuI GAANNNNNNNTTGG 4 cut(s) 296, 328, 473, 505
AluBI AGCT 2 cut(s) 337, 533
AluI AGCT 2 cut(s) 337, 533
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 2 cut(s) 61, 334
AlwNI CAGNNNCTG 1 cut(s) 422
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 5 cut(s) 3, 114, 180, 241, 442
Asp700I GAANNNNTTC 1 cut(s) 474
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 214
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 142, 161
BanII GRGCYC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 535
BccI CCATC 2 cut(s) 242, 350
BciT130I CCWGG 1 cut(s) 543
BcoDI GTCTC 2 cut(s) 61, 334
BfmI CTRYAG 3 cut(s) 147, 414, 552
BfoI RGCGCY 1 cut(s) 165
Bme1390I CCNGG 1 cut(s) 543
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 3 cut(s) 144, 163, 270
BmrFI CCNGG 1 cut(s) 543
BmsI GCATC 3 cut(s) 289, 401, 419
BplI GAGNNNNNCTC 2 cut(s) 58, 90
BpmI CTGGAG 3 cut(s) 82, 333, 459
BpuEI CTTGAG 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 4 cut(s) 111, 135, 238, 272
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 537, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 356, 582
Bse1I ACTGG 1 cut(s) 350
Bse3DI GCAATG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 543
BseDI CCNNGG 4 cut(s) 111, 135, 238, 272
BseGI GGATG 1 cut(s) 538
BseLI CCNNNNNNNGG 3 cut(s) 313, 356, 582
BseMI GCAATG 1 cut(s) 205
BseMII CTCAG 1 cut(s) 572
BseNI ACTGG 1 cut(s) 350
BseYI CCCAGC 1 cut(s) 337
BshFI GGCC 5 cut(s) 5, 116, 182, 243, 444
BshNI GGYRCC 2 cut(s) 142, 161
BsiHKAI GWGCWC 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 3 cut(s) 313, 356, 582
BsmAI GTCTC 2 cut(s) 61, 334
BsmI GAATGC 2 cut(s) 267, 515
BsnI GGCC 5 cut(s) 5, 116, 182, 243, 444
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 1 cut(s) 210
Bsp19I CCATGG 2 cut(s) 111, 272
BspACI CCGC 1 cut(s) 576
BspANI GGCC 5 cut(s) 5, 116, 182, 243, 444
BspCNI CTCAG 1 cut(s) 573
BspLI GGNNCC 3 cut(s) 144, 163, 270
BspMAI CTGCAG 2 cut(s) 151, 418
BspT107I GGYRCC 2 cut(s) 142, 161
BsrBI CCGCTC 1 cut(s) 578
BsrDI GCAATG 1 cut(s) 205
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 4 cut(s) 111, 135, 238, 272
BssMI GATC 1 cut(s) 210
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 4 cut(s) 111, 135, 238, 272
Bst2UI CCWGG 1 cut(s) 543
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 1 cut(s) 44
BstACI GRCGYC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 77, 581
BstDSI CCRYGG 2 cut(s) 111, 272
BstF5I GGATG 1 cut(s) 538
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 2 cut(s) 61, 334
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 3 cut(s) 101, 323, 450
BstNI CCWGG 1 cut(s) 543
BstNSI RCATGY 1 cut(s) 437
BstSCI CCNGG 1 cut(s) 541
BstSFI CTRYAG 3 cut(s) 147, 414, 552
BstXI CCANNNNNNTGG 1 cut(s) 112
BsuRI GGCC 5 cut(s) 5, 116, 182, 243, 444
BtgI CCRYGG 2 cut(s) 111, 272
BtsCI GGATG 1 cut(s) 538
BtsI GCAGTG 2 cut(s) 105, 423
BtsIMutI CAGTG 2 cut(s) 105, 423
Cac8I GCNNGC 1 cut(s) 147
CaiI CAGNNNCTG 1 cut(s) 422
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 1 cut(s) 242
CviAII CATG 6 cut(s) 10, 112, 193, 273, 434, 520
DdeI CTNAG 2 cut(s) 77, 581
DinI GGCGCC 1 cut(s) 163
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Ecl136II GAGCTC 1 cut(s) 533
Eco130I CCWWGG 4 cut(s) 111, 135, 238, 272
Eco147I AGGCCT 2 cut(s) 182, 444
Eco24I GRGCYC 1 cut(s) 535
Eco53kI GAGCTC 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 533
EcoRII CCWGG 1 cut(s) 541
EcoT14I CCWWGG 4 cut(s) 111, 135, 238, 272
EcoT38I GRGCYC 1 cut(s) 535
EgeI GGCGCC 1 cut(s) 163
EheI GGCGCC 1 cut(s) 163
ErhI CCWWGG 4 cut(s) 111, 135, 238, 272
FaeI CATG 6 cut(s) 13, 115, 196, 276, 437, 523
FatI CATG 6 cut(s) 9, 111, 192, 272, 433, 519
FauNDI CATATG 1 cut(s) 397
FblI GTMKAC 1 cut(s) 232
FokI GGATG 1 cut(s) 525
FriOI GRGCYC 1 cut(s) 535
GlaI GCGC 1 cut(s) 163
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 3 cut(s) 82, 333, 459
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 5 cut(s) 5, 116, 182, 243, 444
HapII CCGG 1 cut(s) 165
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 6 cut(s) 13, 115, 196, 276, 437, 523
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 3 cut(s) 69, 81, 229
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 233
Hpy188I TCNGA 2 cut(s) 480, 582
Hpy188III TCNNGA 6 cut(s) 49, 66, 99, 214, 226, 377
Hpy8I GTNNAC 1 cut(s) 233
HpyAV CCTTC 3 cut(s) 162, 172, 374
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4V TGCA 3 cut(s) 149, 416, 453
HpyF10VI GCNNNNNNNGC 3 cut(s) 101, 323, 450
HpyF3I CTNAG 2 cut(s) 77, 581
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 6 cut(s) 13, 115, 196, 276, 437, 523
HspAI GCGC 1 cut(s) 162
KasI GGCGCC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 210
LmnI GCTCC 2 cut(s) 530, 545
LweI GCATC 3 cut(s) 289, 401, 419
MalI GATC 1 cut(s) 212
MbiI CCGCTC 1 cut(s) 578
MboI GATC 1 cut(s) 210
MboII GAAGA 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 535
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
Mly113I GGCGCC 1 cut(s) 162
MlyI GAGTC 2 cut(s) 63, 238
MmeI TCCRAC 2 cut(s) 471, 508
MnlI CCTC 8 cut(s) 56, 106, 127, 210, 357, 434, 455, 576
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 474
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 543
Mva1269I GAATGC 2 cut(s) 267, 515
MvaI CCWGG 1 cut(s) 543
MwoI GCNNNNNNNGC 3 cut(s) 101, 323, 450
NarI GGCGCC 1 cut(s) 162
NcoI CCATGG 2 cut(s) 111, 272
NdeI CATATG 1 cut(s) 397
NdeII GATC 1 cut(s) 210
NlaIII CATG 6 cut(s) 13, 115, 196, 276, 437, 523
NlaIV GGNNCC 3 cut(s) 144, 163, 270
NspI RCATGY 1 cut(s) 437
PaeR7I CTCGAG 1 cut(s) 214
PceI AGGCCT 2 cut(s) 182, 444
PctI GAATGC 2 cut(s) 267, 515
PdmI GAANNNNTTC 1 cut(s) 474
PfeI GAWTC 1 cut(s) 81
PflMI CCANNNNNTGG 2 cut(s) 313, 356
PfoI TCCNGGA 1 cut(s) 541
PleI GAGTC 2 cut(s) 63, 237
PluTI GGCGCC 1 cut(s) 165
PpsI GAGTC 2 cut(s) 63, 237
Psp124BI GAGCTC 1 cut(s) 535
Psp6I CCWGG 1 cut(s) 541
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 1 cut(s) 541
PspN4I GGNNCC 3 cut(s) 144, 163, 270
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 2 cut(s) 151, 418
PstNI CAGNNNCTG 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 535
SaqAI TTAA 1 cut(s) 185
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 2 cut(s) 63, 238
ScrFI CCNGG 1 cut(s) 543
SduI GDGCHC 1 cut(s) 535
SetI ASST 9 cut(s) 48, 141, 292, 339, 349, 459, 535, 559, 587
SfaNI GCATC 3 cut(s) 289, 401, 419
SfcI CTRYAG 3 cut(s) 147, 414, 552
SfoI GGCGCC 1 cut(s) 163
Sfr274I CTCGAG 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 2 cut(s) 214, 226
SmoI CTYRAG 2 cut(s) 214, 226
SseBI AGGCCT 2 cut(s) 182, 444
SsiI CCGC 1 cut(s) 576
SspDI GGCGCC 1 cut(s) 161
SstI GAGCTC 1 cut(s) 535
StuI AGGCCT 2 cut(s) 182, 444
StyD4I CCNGG 1 cut(s) 541
StyI CCWWGG 4 cut(s) 111, 135, 238, 272
TaaI ACNGT 1 cut(s) 553
TaqI TCGA 2 cut(s) 65, 215
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TscAI CASTG 2 cut(s) 112, 423
TspDTI ATGAA 2 cut(s) 216, 508
TspRI CASTG 2 cut(s) 112, 423
Van91I CCANNNNNTGG 2 cut(s) 313, 356
XceI RCATGY 1 cut(s) 437
XcmI CCANNNNNNNNNTGG 2 cut(s) 136, 245
XhoI CTCGAG 1 cut(s) 214
XmiI GTMKAC 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.