RchiOBHm_Chr2g0145521

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0019378
Physical Location & Seq
Reverse (-)
63236333 .. 63236831
499 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51538

Sequence Viewer

Length: 381 bp
ATGACTCATGTTTTCACAGTGAACCTCCAAGTTTTTGTGCCAAAAGTGCTTCCACTAACAGAAATAATCCGATACCTGGTGGCTTCTAGGCTTCAGAAAAACAGCAGTACCAAATGCCAAAATCTAGAAGTAGTTGGAGTCAGTTTGAATATAAAGGCTGGAATTCAACACTTCTGTCTCCACCCTGGTGGAAGAGCAATTATAAATGGGATAGGTAAGAGCTTATCATTAAGCGACTATGATCTTGAGCCATCTAGAATGGCGCTTTACAGATTTGGTAACACATCAGCTGCTGGCTTTTGGTATGCTTTGGGATACATGGAAGCCAAACAAAGGCTTAAGGGTGCGTTTGGGGGGGCTTTTTTGCTCCCCTGCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

126

Amino Acids

13.85

Weight (kDa)

9.62

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_C PF02797 57 - 111 4.8e-09 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019378)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0145521
rosa_multiflora Rmu_sc0002081.1_g000005 Rmu_sc0002835.1_g000015 Rmu_sc0005710.1_g000007 Rmu_sc0021466.1_g000001
rosa_rugosa Rorug01G0320600
rosa_samantha Rh5BG207100 Rh5BG555800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 203, 379
AcsI RAATTY 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 76, 333
AflII CTTAAG 1 cut(s) 338
AgsI TTSAA 2 cut(s) 148, 167
AjnI CCWGG 2 cut(s) 75, 184
AleI CACNNNNGTG 1 cut(s) 186
AluBI AGCT 2 cut(s) 222, 290
AluI AGCT 2 cut(s) 222, 290
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 162
AspLEI GCGC 1 cut(s) 265
BaeI ACNNNNGTAYC 2 cut(s) 91, 124
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 2 cut(s) 77, 186
BciVI GTATCC 1 cut(s) 308
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 3 cut(s) 87, 125, 255
BfoI RGCGCY 1 cut(s) 266
BfrI CTTAAG 1 cut(s) 338
BfuI GTATCC 1 cut(s) 308
BisI GCNGC 1 cut(s) 291
BlsI GCNGC 1 cut(s) 292
Bme1390I CCNGG 2 cut(s) 77, 186
BmrFI CCNGG 2 cut(s) 77, 186
BpuEI CTTGAG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 184
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 333
BseBI CCWGG 2 cut(s) 77, 186
BseDI CCNNGG 1 cut(s) 184
BseLI CCNNNNNNNGG 2 cut(s) 76, 333
BseXI GCAGC 1 cut(s) 277
BslI CCNNNNNNNGG 2 cut(s) 76, 333
BsmAI GTCTC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 241
BspQI GCTCTTC 1 cut(s) 187
BspTI CTTAAG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 184
BssMI GATC 1 cut(s) 241
Bst2UI CCWGG 2 cut(s) 77, 186
Bst4CI ACNGT 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 187
BstAFI CTTAAG 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 295
BstH2I RGCGCY 1 cut(s) 266
BstHHI GCGC 1 cut(s) 265
BstKTI GATC 1 cut(s) 244
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 2 cut(s) 77, 186
BstSCI CCNGG 2 cut(s) 75, 184
BstV1I GCAGC 1 cut(s) 277
BstXI CCANNNNNNTGG 1 cut(s) 188
BsuI GTATCC 1 cut(s) 308
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 293
CfoI GCGC 1 cut(s) 265
CsiI ACCWGGT 1 cut(s) 75
Csp6I GTAC 1 cut(s) 108
CviAII CATG 2 cut(s) 8, 319
CviQI GTAC 1 cut(s) 108
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 77
EcoRI GAATTC 1 cut(s) 162
EcoRII CCWGG 2 cut(s) 75, 184
FaeI CATG 2 cut(s) 11, 322
FaiI YATR 7 cut(s) 9, 152, 203, 240, 306, 320, 379
FatI CATG 2 cut(s) 7, 318
Fnu4HI GCNGC 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 291
FspBI CTAG 3 cut(s) 87, 125, 255
GlaI GCGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 291
HaeII RGCGCY 1 cut(s) 266
HhaI GCGC 1 cut(s) 265
Hin1II CATG 2 cut(s) 11, 322
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 2 cut(s) 4, 138
Hpy166II GTNNAC 1 cut(s) 22
Hpy188I TCNGA 2 cut(s) 71, 96
Hpy188III TCNNGA 3 cut(s) 125, 245, 255
Hpy8I GTNNAC 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 19
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
Hsp92II CATG 2 cut(s) 11, 322
HspAI GCGC 1 cut(s) 263
Kzo9I GATC 1 cut(s) 241
LguI GCTCTTC 1 cut(s) 187
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 6 cut(s) 62, 89, 144, 171, 198, 279
Lsp1109I GCAGC 1 cut(s) 277
MabI ACCWGGT 1 cut(s) 75
MaeI CTAG 3 cut(s) 87, 125, 255
MaeIII GTNAC 1 cut(s) 278
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 1 cut(s) 204
MluCI AATT 2 cut(s) 162, 198
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 1 cut(s) 35
MseI TTAA 2 cut(s) 230, 339
MslI CAYNNNNRTG 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 290
MspCI CTTAAG 1 cut(s) 338
MspR9I CCNGG 2 cut(s) 77, 186
MvaI CCWGG 2 cut(s) 77, 186
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 11, 322
OliI CACNNNNGTG 1 cut(s) 186
PciSI GCTCTTC 1 cut(s) 187
PkrI GCNGC 1 cut(s) 292
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PsiI TTATAA 2 cut(s) 203, 379
Psp6I CCWGG 2 cut(s) 75, 184
PspGI CCWGG 2 cut(s) 75, 184
PstNI CAGNNNCTG 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 186
SapI GCTCTTC 1 cut(s) 187
SaqAI TTAA 2 cut(s) 230, 339
SatI GCNGC 1 cut(s) 291
Sau3AI GATC 1 cut(s) 241
SchI GAGTC 1 cut(s) 147
ScrFI CCNGG 2 cut(s) 77, 186
SetI ASST 5 cut(s) 27, 78, 217, 224, 292
SexAI ACCWGGT 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 186
SmlI CTYRAG 2 cut(s) 245, 338
SmoI CTYRAG 2 cut(s) 245, 338
Sse9I AATT 2 cut(s) 162, 198
SspMI CTAG 3 cut(s) 87, 125, 255
StyD4I CCNGG 2 cut(s) 75, 184
TaaI ACNGT 1 cut(s) 19
TasI AATT 2 cut(s) 162, 198
Tru1I TTAA 2 cut(s) 230, 339
Tru9I TTAA 2 cut(s) 230, 339
TscAI CASTG 1 cut(s) 24
TseI GCWGC 1 cut(s) 290
TspRI CASTG 1 cut(s) 24
Vha464I CTTAAG 1 cut(s) 338
XapI RAATTY 1 cut(s) 162
XbaI TCTAGA 2 cut(s) 124, 254
XspI CTAG 3 cut(s) 87, 125, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.