Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002081.1

Orthogroup ID

OG0019378

Physical Location & Seq

Genomic Coordinates Reverse (-)

26783 .. 27412

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002081.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

atgttgaaattgaagtggttggtcagaacccagattggctcaagtgacaaggcttatgaatgttgcatacaacttgaagatgaaagtggacatctaggctttcgacttaccaaacacctcacagaagcaccagctcttgctttcacagtgaacctccaagtttttgtgccaaaagtgcttccactaacagaaataatccgatacctggtggcttctaggcttcagaaaaacagcagtaccaaatgccaaaatctagaagcagttggagtcagtttgaatataaaggctggaattcaacacttctgtctccaccctggtggaagagcaattataaatgggataggtaagagcttatcattaagcgactatgatcttgagccatctagaatggcgctttacagatttggtaacacatcagctgctggcttttggtatgctttgggatacatggaagccaaaaatttgttaacgggtttttaccgggttccaacggaaaacccgcaaacccgtcgggttaagcccgcgaaacccgttaacttaacgggtttttaccgggtcggcccgttaaaaacccggcctgttaaaaacccgacccgtacccgcactatacccgcccgttgccaggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

209

Amino Acids

23.32

Weight (kDa)

9.95

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019378)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145521
rosa_multiflora	Rmu_sc0002081.1_g000005 Rmu_sc0002835.1_g000015 Rmu_sc0005710.1_g000007 Rmu_sc0021466.1_g000001
rosa_rugosa	Rorug01G0320600
rosa_samantha	Rh5BG207100 Rh5BG555800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	332
AccII	CGCG	1 cut(s)	524
AciI	CCGC	4 cut(s)	500, 522, 601, 612
AcsI	RAATTY	2 cut(s)	291, 460
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	238, 598
AfiI	CCNNNNNNNGG	2 cut(s)	205, 622
AgsI	TTSAA	5 cut(s)	7, 13, 77, 277, 296
AjnI	CCWGG	3 cut(s)	204, 313, 621
AleI	CACNNNNGTG	1 cut(s)	315
AluBI	AGCT	3 cut(s)	134, 351, 419
AluI	AGCT	3 cut(s)	134, 351, 419
Alw26I	GTCTC	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	422
AoxI	GGCC	3 cut(s)	559, 575, 624
ApeKI	GCWGC	1 cut(s)	419
ApoI	RAATTY	2 cut(s)	291, 460
AspLEI	GCGC	1 cut(s)	394
AspS9I	GGNCC	1 cut(s)	560
AsuC2I	CCSGG	3 cut(s)	482, 554, 574
BaeI	ACNNNNGTAYC	2 cut(s)	220, 253
BbvI	GCAGC	1 cut(s)	406
BccI	CCATC	1 cut(s)	388
BcgI	CGANNNNNNTGC	2 cut(s)	491, 525
BciT130I	CCWGG	3 cut(s)	206, 315, 623
BciVI	GTATCC	1 cut(s)	437
BcnI	CCSGG	3 cut(s)	482, 554, 574
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	4 cut(s)	95, 216, 254, 384
BfoI	RGCGCY	1 cut(s)	395
BfuI	GTATCC	1 cut(s)	437
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
Bme1390I	CCNGG	6 cut(s)	206, 315, 482, 554, 574, 623
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	486
BmrFI	CCNGG	6 cut(s)	206, 315, 482, 554, 574, 623
BpuEI	CTTGAG	2 cut(s)	25, 395
BpuMI	CCSGG	3 cut(s)	482, 554, 574
BsaJI	CCNNGG	1 cut(s)	313
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 622
BseBI	CCWGG	3 cut(s)	206, 315, 623
BseDI	CCNNGG	1 cut(s)	313
BseLI	CCNNNNNNNGG	2 cut(s)	205, 622
BseXI	GCAGC	1 cut(s)	406
Bsh1236I	CGCG	1 cut(s)	524
BshFI	GGCC	3 cut(s)	561, 577, 626
BsiSI	CCGG	3 cut(s)	481, 553, 574
BslI	CCNNNNNNNGG	2 cut(s)	205, 622
BsmAI	GTCTC	1 cut(s)	311
BsnI	GGCC	3 cut(s)	561, 577, 626
Bsp143I	GATC	1 cut(s)	370
BspACI	CCGC	4 cut(s)	500, 522, 601, 612
BspANI	GGCC	3 cut(s)	561, 577, 626
BspFNI	CGCG	1 cut(s)	524
BspLI	GGNNCC	1 cut(s)	486
BspQI	GCTCTTC	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	1 cut(s)	370
Bst2UI	CCWGG	3 cut(s)	206, 315, 623
Bst4CI	ACNGT	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	316
BstC8I	GCNNGC	2 cut(s)	424, 522
BstFNI	CGCG	1 cut(s)	524
BstH2I	RGCGCY	1 cut(s)	395
BstHHI	GCGC	1 cut(s)	394
BstKTI	GATC	1 cut(s)	373
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	1 cut(s)	175
BstNI	CCWGG	3 cut(s)	206, 315, 623
BstSCI	CCNGG	6 cut(s)	204, 313, 480, 552, 572, 621
BstUI	CGCG	1 cut(s)	524
BstV1I	GCAGC	1 cut(s)	406
BstXI	CCANNNNNNTGG	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	437
BsuRI	GGCC	3 cut(s)	561, 577, 626
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	2 cut(s)	424, 522
CaiI	CAGNNNCTG	1 cut(s)	422
CfoI	GCGC	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	560
CsiI	ACCWGGT	1 cut(s)	204
Csp6I	GTAC	2 cut(s)	237, 597
CviAII	CATG	1 cut(s)	448
CviQI	GTAC	2 cut(s)	237, 597
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	316
EarI	CTCTTC	1 cut(s)	316
Eco147I	AGGCCT	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	291
EcoRII	CCWGG	3 cut(s)	204, 313, 621
FaeI	CATG	1 cut(s)	451
FaiI	YATR	8 cut(s)	57, 68, 281, 332, 369, 435, 449, 608
FatI	CATG	1 cut(s)	447
FauI	CCCGC	4 cut(s)	507, 529, 608, 619
Fnu4HI	GCNGC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	420
FspBI	CTAG	4 cut(s)	95, 216, 254, 384
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	395
HaeIII	GGCC	3 cut(s)	561, 577, 626
HapII	CCGG	3 cut(s)	481, 553, 574
HhaI	GCGC	1 cut(s)	394
Hin1II	CATG	1 cut(s)	451
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HincII	GTYRAC	2 cut(s)	468, 535
HindII	GTYRAC	2 cut(s)	468, 535
HinfI	GANTC	1 cut(s)	267
HpaI	GTTAAC	2 cut(s)	468, 535
HpaII	CCGG	3 cut(s)	481, 553, 574
Hpy166II	GTNNAC	4 cut(s)	89, 151, 468, 535
Hpy188I	TCNGA	3 cut(s)	26, 200, 225
Hpy188III	TCNNGA	3 cut(s)	254, 374, 384
Hpy8I	GTNNAC	4 cut(s)	89, 151, 468, 535
Hpy99I	CGWCG	1 cut(s)	513
HpyCH4III	ACNGT	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	1 cut(s)	175
Hsp92II	CATG	1 cut(s)	451
HspAI	GCGC	1 cut(s)	392
KspAI	GTTAAC	2 cut(s)	468, 535
Kzo9I	GATC	1 cut(s)	370
LguI	GCTCTTC	1 cut(s)	316
Lsp1109I	GCAGC	1 cut(s)	406
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	4 cut(s)	95, 216, 254, 384
MaeIII	GTNAC	2 cut(s)	44, 407
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	2 cut(s)	89, 333
MluCI	AATT	4 cut(s)	8, 291, 327, 460
MlyI	GAGTC	1 cut(s)	276
MmeI	TCCRAC	2 cut(s)	244, 512
MnlI	CCTC	2 cut(s)	128, 164
MseI	TTAA	7 cut(s)	359, 467, 516, 534, 539, 566, 582
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	3 cut(s)	481, 553, 574
MspR9I	CCNGG	6 cut(s)	206, 315, 482, 554, 574, 623
MvaI	CCWGG	3 cut(s)	206, 315, 623
MvnI	CGCG	1 cut(s)	524
MwoI	GCNNNNNNNGC	1 cut(s)	175
NciI	CCSGG	3 cut(s)	482, 554, 574
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	1 cut(s)	486
NmuCI	GTSAC	1 cut(s)	44
OliI	CACNNNNGTG	1 cut(s)	315
PceI	AGGCCT	1 cut(s)	626
PciSI	GCTCTTC	1 cut(s)	316
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	275
PpsI	GAGTC	1 cut(s)	275
PsiI	TTATAA	1 cut(s)	332
Psp6I	CCWGG	3 cut(s)	204, 313, 621
PspGI	CCWGG	3 cut(s)	204, 313, 621
PspN4I	GGNNCC	1 cut(s)	486
PspPI	GGNCC	1 cut(s)	560
PstNI	CAGNNNCTG	1 cut(s)	422
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	238, 598
RsaNI	GTAC	2 cut(s)	237, 597
RseI	CAYNNNNRTG	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	316
SaqAI	TTAA	7 cut(s)	359, 467, 516, 534, 539, 566, 582
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	1 cut(s)	560
SchI	GAGTC	1 cut(s)	276
ScrFI	CCNGG	6 cut(s)	206, 315, 482, 554, 574, 623
SetI	ASST	7 cut(s)	120, 136, 156, 207, 346, 353, 421
SexAI	ACCWGGT	1 cut(s)	204
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	40, 374
SmoI	CTYRAG	2 cut(s)	40, 374
Sse9I	AATT	4 cut(s)	8, 291, 327, 460
SseBI	AGGCCT	1 cut(s)	626
SsiI	CCGC	4 cut(s)	500, 522, 601, 612
SspMI	CTAG	4 cut(s)	95, 216, 254, 384
StuI	AGGCCT	1 cut(s)	626
StyD4I	CCNGG	6 cut(s)	204, 313, 480, 552, 572, 621
TaaI	ACNGT	1 cut(s)	148
TaqI	TCGA	1 cut(s)	103
TasI	AATT	4 cut(s)	8, 291, 327, 460
Tru1I	TTAA	7 cut(s)	359, 467, 516, 534, 539, 566, 582
Tru9I	TTAA	7 cut(s)	359, 467, 516, 534, 539, 566, 582
TscAI	CASTG	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	72, 96
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	1 cut(s)	153
XapI	RAATTY	2 cut(s)	291, 460
XbaI	TCTAGA	2 cut(s)	253, 383
XspI	CTAG	4 cut(s)	95, 216, 254, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.