Rh5BG555800

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0019378
Physical Location & Seq
Forward (+)
88402813 .. 88405406
2594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG555800.1

Sequence Viewer

Length: 465 bp
ATGGCCTCGTCCATCACCCAAATCTCTCTCTACCTTCTACTCCTAACCCTCTTCTCAGAAAGCCAATTATCTCAATCCTTCAGAGACCTCAAACCCAACCCCAACCCCAACCGTCCATCCACCTCGCTCCAATCAATCACAGACGTCCATGACCTCCTCCCCAAGTACGACCTCCCAAGGGGTCTGTTACCCGACAACAAAAACAGCAGTACCAAATGCCAAAATCTAGAAGCAGTTGGAGTCAGTTTGAATATAAAGGCTGGAATTCAACACTTCTGTCTCCACCCTGGTGGAAGAGCAATTATAAATGGGATAGGTAAGAGCTTATCATTAAGCGACTATGATCTTGAGCCATCTAGAATGGCGCTTTACAGATTTGGTAACACATCAGCTGCTGGCTTTTGGTATGCTTTAGGATACATGGAAGCCAATAACAAAGGCTTAAGAGGGGTGATAGGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

154

Amino Acids

16.86

Weight (kDa)

8.95

Isoelectric Point (pI)

41.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chal_sti_synt_C PF02797 91 - 143 2.1e-08 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019378)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0145521
rosa_multiflora Rmu_sc0002081.1_g000005 Rmu_sc0002835.1_g000015 Rmu_sc0005710.1_g000007 Rmu_sc0021466.1_g000001
rosa_rugosa Rorug01G0320600
rosa_samantha Rh5BG207100 Rh5BG555800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 305
AatII GACGTC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 264
AcuI CTGAAG 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 2 cut(s) 167, 211
AfiI CCNNNNNNNGG 1 cut(s) 178
AflII CTTAAG 1 cut(s) 442
AgsI TTSAA 2 cut(s) 250, 269
AjnI CCWGG 1 cut(s) 286
AleI CACNNNNGTG 1 cut(s) 288
AluBI AGCT 2 cut(s) 324, 392
AluI AGCT 2 cut(s) 324, 392
Alw26I GTCTC 2 cut(s) 78, 284
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 392
ApoI RAATTY 1 cut(s) 264
AspLEI GCGC 1 cut(s) 367
AsuHPI GGTGA 2 cut(s) 7, 463
BaeI ACNNNNGTAYC 2 cut(s) 193, 226
BbvI GCAGC 1 cut(s) 379
BccI CCATC 3 cut(s) 20, 124, 361
BciT130I CCWGG 1 cut(s) 288
BciVI GTATCC 1 cut(s) 410
BcoDI GTCTC 2 cut(s) 78, 284
BfaI CTAG 2 cut(s) 227, 357
BfoI RGCGCY 1 cut(s) 368
BfrI CTTAAG 1 cut(s) 442
BfuI GTATCC 1 cut(s) 410
BisI GCNGC 1 cut(s) 393
BlsI GCNGC 1 cut(s) 394
Bme1390I CCNGG 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 288
BpuEI CTTGAG 1 cut(s) 368
BsaHI GRCGYC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 176, 286
Bsc4I CCNNNNNNNGG 1 cut(s) 178
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 176, 286
BseGI GGATG 1 cut(s) 116
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 1 cut(s) 69
BseRI GAGGAG 1 cut(s) 146
BseXI GCAGC 1 cut(s) 379
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 2 cut(s) 78, 284
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 343
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 68
BspQI GCTCTTC 1 cut(s) 289
BspTI CTTAAG 1 cut(s) 442
BspTNI GGTCTC 1 cut(s) 78
BssECI CCNNGG 2 cut(s) 176, 286
BssMI GATC 1 cut(s) 343
BssNI GRCGYC 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 2 cut(s) 56, 289
BstACI GRCGYC 1 cut(s) 144
BstAFI CTTAAG 1 cut(s) 442
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 1 cut(s) 55
BstF5I GGATG 1 cut(s) 116
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 1 cut(s) 346
BstMAI GTCTC 2 cut(s) 78, 284
BstMBI GATC 1 cut(s) 343
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 286
BstV1I GCAGC 1 cut(s) 379
BstXI CCANNNNNNTGG 1 cut(s) 290
BsuI GTATCC 1 cut(s) 410
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 397
CaiI CAGNNNCTG 1 cut(s) 395
CfoI GCGC 1 cut(s) 367
Csp6I GTAC 2 cut(s) 166, 210
CviAII CATG 2 cut(s) 149, 421
CviJI RGCY 9 cut(s) 5, 63, 260, 324, 352, 392, 399, 428, 441
CviKI_1 RGCY 9 cut(s) 5, 63, 260, 324, 352, 392, 399, 428, 441
CviQI GTAC 2 cut(s) 166, 210
DdeI CTNAG 1 cut(s) 55
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
Eam1104I CTCTTC 2 cut(s) 56, 289
EarI CTCTTC 2 cut(s) 56, 289
Eco130I CCWWGG 1 cut(s) 176
Eco31I GGTCTC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 2 cut(s) 152, 424
FaiI YATR 6 cut(s) 150, 254, 305, 342, 408, 422
FatI CATG 2 cut(s) 148, 420
Fnu4HI GCNGC 1 cut(s) 393
FokI GGATG 1 cut(s) 103
Fsp4HI GCNGC 1 cut(s) 393
FspBI CTAG 2 cut(s) 227, 357
GlaI GCGC 1 cut(s) 366
GluI GCNGC 1 cut(s) 393
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 367
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 2 cut(s) 152, 424
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HinfI GANTC 2 cut(s) 240, 459
HphI GGTGA 2 cut(s) 7, 463
Hpy188I TCNGA 2 cut(s) 58, 83
Hpy188III TCNNGA 3 cut(s) 227, 347, 357
HpyAV CCTTC 2 cut(s) 44, 88
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 144
HpyF3I CTNAG 1 cut(s) 55
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 152, 424
HspAI GCGC 1 cut(s) 365
Kzo9I GATC 1 cut(s) 343
LguI GCTCTTC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 4 cut(s) 246, 273, 300, 381
Lsp1109I GCAGC 1 cut(s) 379
MaeI CTAG 2 cut(s) 227, 357
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 186, 380
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 2 cut(s) 43, 306
MluCI AATT 3 cut(s) 65, 264, 300
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 8 cut(s) 16, 59, 98, 133, 164, 167, 182, 440
MseI TTAA 2 cut(s) 332, 443
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 392
MspCI CTTAAG 1 cut(s) 442
MspR9I CCNGG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 288
NdeII GATC 1 cut(s) 343
NlaIII CATG 2 cut(s) 152, 424
OliI CACNNNNGTG 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 289
PfeI GAWTC 1 cut(s) 459
PkrI GCNGC 1 cut(s) 394
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PsiI TTATAA 1 cut(s) 305
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PstNI CAGNNNCTG 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 2 cut(s) 167, 211
RsaNI GTAC 2 cut(s) 166, 210
RseI CAYNNNNRTG 1 cut(s) 288
SapI GCTCTTC 1 cut(s) 289
SaqAI TTAA 2 cut(s) 332, 443
SatI GCNGC 1 cut(s) 393
Sau3AI GATC 1 cut(s) 343
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 288
SetI ASST 9 cut(s) 36, 90, 125, 147, 156, 174, 319, 326, 394
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 347, 442
SmoI CTYRAG 2 cut(s) 347, 442
Sse9I AATT 3 cut(s) 65, 264, 300
SspMI CTAG 2 cut(s) 227, 357
StyD4I CCNGG 1 cut(s) 286
StyI CCWWGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 1 cut(s) 147
TasI AATT 3 cut(s) 65, 264, 300
TfiI GAWTC 1 cut(s) 459
Tru1I TTAA 2 cut(s) 332, 443
Tru9I TTAA 2 cut(s) 332, 443
TseI GCWGC 1 cut(s) 392
Vha464I CTTAAG 1 cut(s) 442
XapI RAATTY 1 cut(s) 264
XbaI TCTAGA 2 cut(s) 226, 356
XspI CTAG 2 cut(s) 227, 357
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.