Rmu_sc0005710.1_g000007

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005710.1
OG0019378
Physical Location & Seq
Reverse (-)
42566 .. 43044
479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005710.1_g000007.1.cds

Sequence Viewer

Length: 390 bp
atgatagatgaggatacagcaaagaacttggcattccgatacctggtggcttctagacttcagaaaaacagcagtaccaaatgccaaaatctagaagcagttggagtcactttgaatataaaggctggaattcaacacttctgtctccaccctggtggaagagcaattacaaatgggataggtaagagcttatcattaagcgactatgatcttgagccatctagaatggcgctttacagatttggtaatacatcagctgctggcttttggtatgctttgggatacatggaagccaaacaaaggcttaagaggggtgataggattctaatgagtgtggctttggagcaggttttaaatgtactaaggccccttaattatgtcaatgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

129

Amino Acids

14.37

Weight (kDa)

9.55

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019378)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0145521
rosa_multiflora Rmu_sc0002081.1_g000005 Rmu_sc0002835.1_g000015 Rmu_sc0005710.1_g000007 Rmu_sc0021466.1_g000001
rosa_rugosa Rorug01G0320600
rosa_samantha Rh5BG207100 Rh5BG555800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 2 cut(s) 76, 360
AfiI CCNNNNNNNGG 2 cut(s) 43, 300
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 2 cut(s) 115, 134
AjnI CCWGG 2 cut(s) 42, 151
AleI CACNNNNGTG 1 cut(s) 153
AluBI AGCT 2 cut(s) 189, 257
AluI AGCT 2 cut(s) 189, 257
Alw26I GTCTC 1 cut(s) 149
AlwNI CAGNNNCTG 1 cut(s) 260
AoxI GGCC 1 cut(s) 365
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 1 cut(s) 129
AspLEI GCGC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 366
AsuHPI GGTGA 1 cut(s) 326
BaeI ACNNNNGTAYC 2 cut(s) 58, 91
BarI GAAGNNNNNNTAC 2 cut(s) 151, 183
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 226
BciT130I CCWGG 2 cut(s) 44, 153
BciVI GTATCC 2 cut(s) 7, 275
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 3 cut(s) 54, 92, 222
BfoI RGCGCY 1 cut(s) 233
BfrI CTTAAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 337
BfuI GTATCC 2 cut(s) 7, 275
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 2 cut(s) 44, 153
BmgT120I GGNCC 1 cut(s) 366
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 2 cut(s) 44, 153
BpuEI CTTGAG 1 cut(s) 233
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 300
BseBI CCWGG 2 cut(s) 44, 153
BseDI CCNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 2 cut(s) 43, 300
BseXI GCAGC 1 cut(s) 244
BshFI GGCC 1 cut(s) 367
BslI CCNNNNNNNGG 2 cut(s) 43, 300
BsmAI GTCTC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 32
BsnI GGCC 1 cut(s) 367
Bsp143I GATC 1 cut(s) 208
BspANI GGCC 1 cut(s) 367
BspLI GGNNCC 1 cut(s) 368
BspMI ACCTGC 1 cut(s) 337
BspQI GCTCTTC 1 cut(s) 154
BspTI CTTAAG 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 1 cut(s) 208
Bst2UI CCWGG 2 cut(s) 44, 153
Bst6I CTCTTC 1 cut(s) 154
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 362
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 1 cut(s) 232
BstKTI GATC 1 cut(s) 211
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 1 cut(s) 208
BstNI CCWGG 2 cut(s) 44, 153
BstSCI CCNGG 2 cut(s) 42, 151
BstV1I GCAGC 1 cut(s) 244
BstXI CCANNNNNNTGG 1 cut(s) 155
BsuI GTATCC 2 cut(s) 7, 275
BsuRI GGCC 1 cut(s) 367
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 262
CaiI CAGNNNCTG 1 cut(s) 260
CfoI GCGC 1 cut(s) 232
Cfr13I GGNCC 1 cut(s) 366
CsiI ACCWGGT 1 cut(s) 42
Csp6I GTAC 2 cut(s) 75, 359
CviAII CATG 1 cut(s) 286
CviQI GTAC 2 cut(s) 75, 359
DdeI CTNAG 1 cut(s) 362
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraI TTTAAA 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 154
EarI CTCTTC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 44
EcoO109I RGGNCCY 1 cut(s) 366
EcoRI GAATTC 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 42, 151
FaeI CATG 1 cut(s) 289
FaiI YATR 5 cut(s) 119, 207, 273, 287, 378
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 3 cut(s) 54, 92, 222
GlaI GCGC 1 cut(s) 231
GluI GCNGC 1 cut(s) 258
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 1 cut(s) 367
HhaI GCGC 1 cut(s) 232
Hin1II CATG 1 cut(s) 289
Hin6I GCGC 1 cut(s) 230
HinP1I GCGC 1 cut(s) 230
HinfI GANTC 2 cut(s) 105, 322
HphI GGTGA 1 cut(s) 326
Hpy188I TCNGA 3 cut(s) 38, 63, 389
Hpy188III TCNNGA 4 cut(s) 54, 92, 212, 222
HpyF3I CTNAG 1 cut(s) 362
Hsp92II CATG 1 cut(s) 289
HspAI GCGC 1 cut(s) 230
Kzo9I GATC 1 cut(s) 208
LguI GCTCTTC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 7 cut(s) 29, 56, 111, 138, 165, 246, 332
Lsp1109I GCAGC 1 cut(s) 244
MabI ACCWGGT 1 cut(s) 42
MaeI CTAG 3 cut(s) 54, 92, 222
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 1 cut(s) 171
MluCI AATT 3 cut(s) 129, 165, 373
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 2 cut(s) 4, 303
MseI TTAA 4 cut(s) 197, 306, 353, 372
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 257
MspCI CTTAAG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 44, 153
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 2 cut(s) 44, 153
NdeII GATC 1 cut(s) 208
NlaIII CATG 1 cut(s) 289
NlaIV GGNNCC 1 cut(s) 368
NmuCI GTSAC 1 cut(s) 106
OliI CACNNNNGTG 1 cut(s) 153
PciSI GCTCTTC 1 cut(s) 154
PctI GAATGC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 322
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
Psp6I CCWGG 2 cut(s) 42, 151
PspGI CCWGG 2 cut(s) 42, 151
PspN4I GGNNCC 1 cut(s) 368
PspPI GGNCC 1 cut(s) 366
PstNI CAGNNNCTG 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 257
RsaI GTAC 2 cut(s) 76, 360
RsaNI GTAC 2 cut(s) 75, 359
RseI CAYNNNNRTG 1 cut(s) 153
SapI GCTCTTC 1 cut(s) 154
SaqAI TTAA 4 cut(s) 197, 306, 353, 372
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 366
SchI GAGTC 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 44, 153
SetI ASST 5 cut(s) 45, 184, 191, 259, 351
SexAI ACCWGGT 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 2 cut(s) 212, 305
SmoI CTYRAG 2 cut(s) 212, 305
Sse9I AATT 3 cut(s) 129, 165, 373
SspMI CTAG 3 cut(s) 54, 92, 222
StyD4I CCNGG 2 cut(s) 42, 151
TasI AATT 3 cut(s) 129, 165, 373
TatI WGTACW 1 cut(s) 358
TfiI GAWTC 1 cut(s) 322
Tru1I TTAA 4 cut(s) 197, 306, 353, 372
Tru9I TTAA 4 cut(s) 197, 306, 353, 372
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 257
Tsp45I GTSAC 1 cut(s) 106
Vha464I CTTAAG 1 cut(s) 305
XapI RAATTY 1 cut(s) 129
XbaI TCTAGA 3 cut(s) 53, 91, 221
XspI CTAG 3 cut(s) 54, 92, 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.