Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0019378

Physical Location & Seq

Genomic Coordinates Forward (+)

43974066 .. 43974572

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0320600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGGGAATTGGGTTGGGAAGGAAAGGAGTGTACACCCAGTTGATGAAGGTGAAGGAGTACGTGGAGTTGAATCAAACAGTCTGATCAGAATTAAGGTGCAGATGACTAAAAGAAAGCTCAAGGAGTTTATAGCGCAGGTGGACATGAACAACGGCGGCGATAACTCGGAGGAGCTTGGCGGTGTGATCCTGAAAGAATGCTTGGAAGGTAGGCTTAGTGCTCGTGTTGTCGCTGTTGCTGCTGAAGAAGATCGTGATCGAAAGGTATCAAAGTCTTCGAAGTGTAGGATGTTGAGCACCAGTTCTGAGGAAGAAGAGCACCATCATCTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

111

Amino Acids

12.37

Weight (kDa)

6.1

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019378)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145521
rosa_multiflora	Rmu_sc0002081.1_g000005 Rmu_sc0002835.1_g000015 Rmu_sc0005710.1_g000007 Rmu_sc0021466.1_g000001
rosa_rugosa	Rorug01G0320600
rosa_samantha	Rh5BG207100 Rh5BG555800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
Acc36I	ACCTGC	1 cut(s)	127
AciI	CCGC	2 cut(s)	156, 180
AclWI	GGATC	1 cut(s)	181
AcuI	CTGAAG	1 cut(s)	264
AfaI	GTAC	2 cut(s)	33, 60
AgsI	TTSAA	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
AluBI	AGCT	2 cut(s)	118, 175
AluI	AGCT	2 cut(s)	118, 175
Alw21I	GWGCWC	3 cut(s)	223, 299, 321
AlwI	GGATC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	239
AspLEI	GCGC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	62
AsuII	TTCGAA	1 cut(s)	278
BauI	CACGAG	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	267
Bbv12I	GWGCWC	3 cut(s)	223, 299, 321
BbvI	GCAGC	1 cut(s)	226
BccI	CCATC	1 cut(s)	330
BceAI	ACGGC	1 cut(s)	169
BclI	TGATCA	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	127
BisI	GCNGC	2 cut(s)	157, 240
BlsI	GCNGC	2 cut(s)	158, 241
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BpiI	GAAGAC	1 cut(s)	267
Bpu14I	TTCGAA	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	104
BsaAI	YACGTR	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	255
Bse1I	ACTGG	2 cut(s)	38, 300
Bse8I	GATNNNNATC	1 cut(s)	255
BseGI	GGATG	1 cut(s)	294
BseJI	GATNNNNATC	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	38, 300
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	226
BsgI	GTGCAG	1 cut(s)	119
BsiHKAI	GWGCWC	3 cut(s)	223, 299, 321
BsmI	GAATGC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	3 cut(s)	223, 299, 321
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	84, 186, 250, 256
BspACI	CCGC	2 cut(s)	156, 180
BspCNI	CTCAG	1 cut(s)	298
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	181
BspQI	GCTCTTC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	2 cut(s)	38, 300
BssMI	GATC	4 cut(s)	84, 186, 250, 256
BssSI	CACGAG	1 cut(s)	222
Bst2BI	CACGAG	1 cut(s)	222
Bst4CI	ACNGT	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	309
BstAUI	TGTACA	1 cut(s)	31
BstBAI	YACGTR	1 cut(s)	62
BstBI	TTCGAA	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	215, 306
BstF5I	GGATG	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	136
BstKTI	GATC	4 cut(s)	87, 189, 253, 259
BstMBI	GATC	4 cut(s)	84, 186, 250, 256
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	226
BstV2I	GAAGAC	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	136
Csp6I	GTAC	2 cut(s)	32, 59
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	3 cut(s)	118, 175, 214
CviKI_1	RGCY	3 cut(s)	118, 175, 214
CviQI	GTAC	2 cut(s)	32, 59
DdeI	CTNAG	2 cut(s)	215, 306
DpnI	GATC	4 cut(s)	86, 188, 252, 258
DpnII	GATC	4 cut(s)	84, 186, 250, 256
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco57I	CTGAAG	1 cut(s)	264
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	131, 146
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	157, 240
FokI	GGATG	1 cut(s)	301
Fsp4HI	GCNGC	2 cut(s)	157, 240
GlaI	GCGC	1 cut(s)	135
GluI	GCNGC	2 cut(s)	157, 240
HhaI	GCGC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	148
Hin6I	GCGC	1 cut(s)	134
HinP1I	GCGC	1 cut(s)	134
HinfI	GANTC	1 cut(s)	71
HphI	GGTGA	1 cut(s)	62
Hpy166II	GTNNAC	3 cut(s)	32, 34, 142
Hpy188I	TCNGA	4 cut(s)	84, 89, 169, 307
Hpy188III	TCNNGA	2 cut(s)	190, 254
Hpy8I	GTNNAC	3 cut(s)	32, 34, 142
HpyAV	CCTTC	4 cut(s)	13, 41, 47, 200
HpyCH4III	ACNGT	1 cut(s)	80
HpyCH4IV	ACGT	1 cut(s)	61
HpyCH4V	TGCA	1 cut(s)	100
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	2 cut(s)	215, 306
HpySE526I	ACGT	1 cut(s)	61
Hsp92II	CATG	1 cut(s)	148
HspAI	GCGC	1 cut(s)	134
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	4 cut(s)	84, 186, 250, 256
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	4 cut(s)	51, 122, 203, 313
Lsp1109I	GCAGC	1 cut(s)	226
MaeII	ACGT	1 cut(s)	61
MalI	GATC	4 cut(s)	86, 188, 252, 258
MboI	GATC	4 cut(s)	84, 186, 250, 256
MboII	GAAGA	5 cut(s)	257, 260, 267, 323, 326
MhlI	GDGCHC	3 cut(s)	223, 299, 321
MluCI	AATT	2 cut(s)	7, 90
MnlI	CCTC	2 cut(s)	163, 301
MseI	TTAA	1 cut(s)	93
Mva1269I	GAATGC	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	4 cut(s)	84, 186, 250, 256
NlaIII	CATG	1 cut(s)	148
NspV	TTCGAA	1 cut(s)	278
PaqCI	CACCTGC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	309
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	2 cut(s)	158, 241
Ppu21I	YACGTR	1 cut(s)	62
RsaI	GTAC	2 cut(s)	33, 60
RsaNI	GTAC	2 cut(s)	32, 59
SapI	GCTCTTC	1 cut(s)	309
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	2 cut(s)	157, 240
Sau3AI	GATC	4 cut(s)	84, 186, 250, 256
SduI	GDGCHC	3 cut(s)	223, 299, 321
SetI	ASST	8 cut(s)	52, 64, 99, 120, 141, 177, 211, 267
SfuI	TTCGAA	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	7, 90
SsiI	CCGC	2 cut(s)	156, 180
TaaI	ACNGT	1 cut(s)	80
TaiI	ACGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	259, 278
TasI	AATT	2 cut(s)	7, 90
TatI	WGTACW	1 cut(s)	31
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseI	GCWGC	1 cut(s)	239
TspDTI	ATGAA	2 cut(s)	60, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.