RchiOBHm_Chr2g0160201

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
76187046 .. 76187846
801 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52868

Sequence Viewer

Length: 801 bp
ATGAAAATTCTAGCATTATATGCTCCCTATTTTCTCTTACTTTCATGCATACCGCAAAATTACCATTCCATTAAAGCCCAAGTAATTGACAATTTTTTGAACTGTAACGGAACTGTCAATTATACTTCCGGGAGTGTCTATGAGCATAGGTTGAACCTCACCCTCAATTCCCTTGTTGCCAATGCCTCTCTCACAGGATTCTACATGACAAATGTCGGTGACACAAATGACAAAGTTTATGGACTTGTTCAATGCAGGGGAGACCTCTCCAAAAATGATTGCAATACTTGTGCAAAAACAGCAGCCACAAAGACCAGGCAACTATGTCTAAGCCAGAAGGAGGCTTCCATTGGCTATGTTAATTGTTCATTACAGTATTCCAACCGGCGTTTCTTCTCTACTTTCAACAGCTTTCCCAGATTAAATTTACACAATTACAAGACAGCACCTGATCCGGTTCTTTATAATCGTCAGTTGGGTAACTTGGTTAAGAATCTATCTTCAAAAGCAGCATCTGATCCTTCCAGATTTGCCATTGGGTTCACAAGTAACACAGATTTCATTGATATATATGGTATGGCTCAGTGCACCCAAGACTTGGCAGAGAACAGCTGCTTAATTTGCCTGCAAGAGATTGCTTTTTATATTCCCCAGGATGGAACAGTTGGGGTTACATTGCTTTCAAGGAGTTGCAATCTTCGCTATGAGATATATTCGTTTTCTGTGTCGCCATCACGCAATCAAACACCTCCATCACCACAGACAACACTTCATATTTTTCACGCATTACATCACCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

266

Amino Acids

29.72

Weight (kDa)

8.59

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 35 - 129 4.6e-21 Salt stress response/antifungal
Stress-antifung PF01657 152 - 237 8.3e-10 Salt stress response/antifungal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018493)

Species Orthologous Gene IDs
malus_domestica MD09G1104200.v1.1 MD17G1091900.v1.1
prunus_persica Prupe.3G221500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160201
rosa_laevigata RLG00000021204
rosa_rugosa Rorug02G0482400
rosa_samantha Rh2BG561000 Rh2CG531600 Rh2DG569700
rosa_wichuraiana Rw2G045300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AccB7I CCANNNNNTGG 1 cut(s) 598
AciI CCGC 1 cut(s) 53
AclWI GGATC 2 cut(s) 446, 512
AcsI RAATTY 2 cut(s) 6, 424
AfiI CCNNNNNNNGG 3 cut(s) 340, 598, 656
AgsI TTSAA 6 cut(s) 100, 154, 251, 406, 504, 684
AjnI CCWGG 2 cut(s) 314, 651
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 2 cut(s) 411, 612
AluI AGCT 2 cut(s) 411, 612
Alw21I GWGCWC 1 cut(s) 590
Alw26I GTCTC 1 cut(s) 255
Alw44I GTGCAC 1 cut(s) 586
AlwI GGATC 2 cut(s) 446, 512
AlwNI CAGNNNCTG 2 cut(s) 449, 515
ApaLI GTGCAC 1 cut(s) 586
ApeKI GCWGC 3 cut(s) 302, 509, 612
ApoI RAATTY 2 cut(s) 6, 424
AsuC2I CCSGG 1 cut(s) 130
AsuHPI GGTGA 4 cut(s) 151, 230, 747, 785
BaeGI GKGCMC 1 cut(s) 590
Bbv12I GWGCWC 1 cut(s) 590
BbvI GCAGC 3 cut(s) 314, 521, 599
BccI CCATC 3 cut(s) 650, 739, 760
BciT130I CCWGG 2 cut(s) 316, 653
BcnI CCSGG 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 1 cut(s) 11
BisI GCNGC 3 cut(s) 303, 510, 613
BlsI GCNGC 3 cut(s) 304, 511, 614
Bme1390I CCNGG 3 cut(s) 130, 316, 653
BmrFI CCNGG 3 cut(s) 130, 316, 653
BmsI GCATC 1 cut(s) 521
BoxI GACNNNNGTC 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 651
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 598, 656
Bse118I RCCGGY 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 674
BseBI CCWGG 2 cut(s) 316, 653
BseDI CCNNGG 1 cut(s) 651
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 3 cut(s) 340, 598, 656
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 1 cut(s) 596
BseSI GKGCMC 1 cut(s) 590
BseXI GCAGC 3 cut(s) 314, 521, 599
BsiHKAI GWGCWC 1 cut(s) 590
BsiSI CCGG 3 cut(s) 129, 385, 455
BslI CCNNNNNNNGG 3 cut(s) 340, 598, 656
BsmAI GTCTC 1 cut(s) 255
Bso31I GGTCTC 1 cut(s) 255
Bsp1286I GDGCHC 1 cut(s) 590
Bsp143I GATC 2 cut(s) 451, 517
BspACI CCGC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 595
BspPI GGATC 2 cut(s) 446, 512
BspTNI GGTCTC 1 cut(s) 255
BsrDI GCAATG 1 cut(s) 674
BsrFI RCCGGY 1 cut(s) 384
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 651
BssMI GATC 2 cut(s) 451, 517
Bst2UI CCWGG 2 cut(s) 316, 653
Bst4CI ACNGT 4 cut(s) 104, 115, 375, 664
BstAPI GCANNNNNTGC 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 626
BstDEI CTNAG 2 cut(s) 329, 582
BstF5I GGATG 1 cut(s) 661
BstKTI GATC 2 cut(s) 454, 520
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 2 cut(s) 451, 517
BstMWI GCNNNNNNNGC 4 cut(s) 20, 299, 621, 699
BstNI CCWGG 2 cut(s) 316, 653
BstPAI GACNNNNGTC 1 cut(s) 212
BstSCI CCNGG 3 cut(s) 128, 314, 651
BstSLI GKGCMC 1 cut(s) 590
BstV1I GCAGC 3 cut(s) 314, 521, 599
BtsCI GGATG 1 cut(s) 661
BtsIMutI CAGTG 1 cut(s) 590
Cac8I GCNNGC 1 cut(s) 626
CaiI CAGNNNCTG 2 cut(s) 449, 515
Cfr10I RCCGGY 1 cut(s) 384
CviAII CATG 2 cut(s) 45, 205
CviJI RGCY 8 cut(s) 77, 305, 333, 344, 354, 411, 581, 612
CviKI_1 RGCY 8 cut(s) 77, 305, 333, 344, 354, 411, 581, 612
DdeI CTNAG 2 cut(s) 329, 582
DpnI GATC 2 cut(s) 453, 519
DpnII GATC 2 cut(s) 451, 517
Eco31I GGTCTC 1 cut(s) 255
EcoRII CCWGG 2 cut(s) 314, 651
EcoT22I ATGCAT 1 cut(s) 50
FaeI CATG 2 cut(s) 48, 208
FatI CATG 2 cut(s) 44, 204
Fnu4HI GCNGC 3 cut(s) 303, 510, 613
FokI GGATG 1 cut(s) 668
Fsp4HI GCNGC 3 cut(s) 303, 510, 613
FspBI CTAG 1 cut(s) 11
GluI GCNGC 3 cut(s) 303, 510, 613
HapII CCGG 3 cut(s) 129, 385, 455
Hin1II CATG 2 cut(s) 48, 208
HinfI GANTC 2 cut(s) 198, 493
HpaII CCGG 3 cut(s) 129, 385, 455
HphI GGTGA 4 cut(s) 151, 230, 747, 785
Hpy166II GTNNAC 2 cut(s) 543, 588
Hpy188I TCNGA 1 cut(s) 517
Hpy188III TCNNGA 1 cut(s) 525
Hpy8I GTNNAC 2 cut(s) 543, 588
HpyAV CCTTC 2 cut(s) 331, 531
HpyCH4III ACNGT 4 cut(s) 104, 115, 375, 664
HpyCH4V TGCA 7 cut(s) 48, 255, 282, 293, 588, 628, 693
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 299, 621, 699
HpyF3I CTNAG 2 cut(s) 329, 582
Hsp92II CATG 2 cut(s) 48, 208
Kzo9I GATC 2 cut(s) 451, 517
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 3 cut(s) 314, 521, 599
LweI GCATC 1 cut(s) 521
MaeI CTAG 1 cut(s) 11
MaeIII GTNAC 5 cut(s) 104, 218, 479, 548, 670
MalI GATC 2 cut(s) 453, 519
MboI GATC 2 cut(s) 451, 517
MboII GAAGA 3 cut(s) 385, 492, 689
MhlI GDGCHC 1 cut(s) 590
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 6 cut(s) 167, 173, 196, 275, 334, 759
Mph1103I ATGCAT 1 cut(s) 50
MseI TTAA 6 cut(s) 72, 360, 422, 489, 617, 799
MspA1I CMGCKG 1 cut(s) 612
MspI CCGG 3 cut(s) 129, 385, 455
MspR9I CCNGG 3 cut(s) 130, 316, 653
MvaI CCWGG 2 cut(s) 316, 653
MwoI GCNNNNNNNGC 4 cut(s) 20, 299, 621, 699
NciI CCSGG 1 cut(s) 130
NdeII GATC 2 cut(s) 451, 517
NlaIII CATG 2 cut(s) 48, 208
NmuCI GTSAC 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 50
PfeI GAWTC 2 cut(s) 198, 493
PflMI CCANNNNNTGG 1 cut(s) 598
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 3 cut(s) 304, 511, 614
PshAI GACNNNNGTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 465
Psp6I CCWGG 2 cut(s) 314, 651
PspGI CCWGG 2 cut(s) 314, 651
PstNI CAGNNNCTG 2 cut(s) 449, 515
PvuII CAGCTG 1 cut(s) 612
SaqAI TTAA 6 cut(s) 72, 360, 422, 489, 617, 799
SatI GCNGC 3 cut(s) 303, 510, 613
Sau3AI GATC 2 cut(s) 451, 517
ScrFI CCNGG 3 cut(s) 130, 316, 653
SduI GDGCHC 1 cut(s) 590
SetI ASST 7 cut(s) 152, 159, 267, 413, 451, 614, 751
SfaNI GCATC 1 cut(s) 521
SsiI CCGC 1 cut(s) 53
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 3 cut(s) 128, 314, 651
TaaI ACNGT 4 cut(s) 104, 115, 375, 664
TfiI GAWTC 2 cut(s) 198, 493
Tru1I TTAA 6 cut(s) 72, 360, 422, 489, 617, 799
Tru9I TTAA 6 cut(s) 72, 360, 422, 489, 617, 799
TscAI CASTG 1 cut(s) 590
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 3 cut(s) 302, 509, 612
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 5 cut(s) 17, 33, 357, 550, 761
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 590
Van91I CCANNNNNTGG 1 cut(s) 598
VneI GTGCAC 1 cut(s) 586
XapI RAATTY 2 cut(s) 6, 424
XspI CTAG 1 cut(s) 11
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.