Rh2DG569700

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0018493
Physical Location & Seq
Forward (+)
80036746 .. 80044385
7640 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG569700.1

Sequence Viewer

Length: 783 bp
ATGAAAATTCTTGCATTATATGCTCCCTATTTTCTCTTACTTTCATGCATACTGCAAAATTACCATTCCATTAAAGCCCAAGTAATTGACAATTTTTTGAACTGTAACGGAACTGTCAATTATACTTCCGGGAGTGTCTATGAGCATAGGTTGAACCTCACCCTCAATTCCCTTGTTGCCAATGCCCCTCTCACAGGATTCTACATGACAAACGTCGGTGACACAAATGACACAGTTTATGGACTTGTTCAATGCAGGGGAGACCTCTCAAAAAAAGATTGCAATACTTGTGCAAACACAGCAGCCACAAAGATCAGGCAATTATGTCTAAGCCAGAAGGAGGCTTCCATTGGCTATGTTAATTGTTCATTACAGTATTCCAACCGGCGTTTCTTCTCTACTTTCAACAGCTTTCCCAGATTAAATTTACACAACTACAAGACAGCACCTGATCCGGTTCTTTATAATCGTCAGTTGGGTAACTTGGTTAAGAATCTATCTTCAAAAGCTGCATCTGATCCTTCCAGATTTGCCATTGGGTTCACAAGTTACACAGATTTCATTGATATATATGGGAAATTGGCCAAACCCCGGCAGTTGCACAATTCACAGTGGGGAATGATGTGTCCCGCTGAGACACTTGAAGGGCAGGAAAGTATTGAAATTTTCCCTGCTATTATTCCCCCAGCCACACAGATTTTTGTTAACGGCTGCTGGGTTGGCATACATTGTGATCTTGAAATGTTGGTGAGAACATTAAGGAAGCTAAGGCGGATCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Motile_Sperm Pkinase Pkinase_Tyr Stress-antifung

Protein Analysis

260

Amino Acids

29.26

Weight (kDa)

8.97

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stress-antifung PF01657 35 - 129 3.2e-21 Salt stress response/antifungal
RNA_pol_Rpb2_3 PF04565 193 - 217 7.8e-07 RNA polymerase Rpb2, domain 3
RNA_pol_Rpb2_4 PF04566 233 - 258 4.7e-06 RNA polymerase Rpb2, domain 4
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018493)

Species Orthologous Gene IDs
malus_domestica MD09G1104200.v1.1 MD17G1091900.v1.1
prunus_persica Prupe.3G221500_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0160201
rosa_laevigata RLG00000021204
rosa_rugosa Rorug02G0482400
rosa_samantha Rh2BG561000 Rh2CG531600 Rh2DG569700
rosa_wichuraiana Rw2G045300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AciI CCGC 2 cut(s) 630, 772
AclWI GGATC 4 cut(s) 446, 512, 769, 782
AcoI YGGCCR 1 cut(s) 582
AcsI RAATTY 3 cut(s) 6, 424, 663
AfiI CCNNNNNNNGG 3 cut(s) 194, 340, 591
AgsI TTSAA 8 cut(s) 100, 154, 251, 406, 504, 644, 662, 740
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
AluBI AGCT 3 cut(s) 411, 509, 766
AluI AGCT 3 cut(s) 411, 509, 766
Alw26I GTCTC 2 cut(s) 255, 629
AlwI GGATC 4 cut(s) 446, 512, 769, 782
AlwNI CAGNNNCTG 1 cut(s) 449
AoxI GGCC 1 cut(s) 582
ApeKI GCWGC 3 cut(s) 302, 509, 711
ApoI RAATTY 3 cut(s) 6, 424, 663
AsuC2I CCSGG 2 cut(s) 130, 592
AsuHPI GGTGA 3 cut(s) 151, 230, 760
BalI TGGCCA 1 cut(s) 584
BamHI GGATCC 1 cut(s) 774
BbvI GCAGC 3 cut(s) 314, 496, 698
BceAI ACGGC 1 cut(s) 724
BcnI CCSGG 2 cut(s) 130, 592
BcoDI GTCTC 2 cut(s) 255, 629
BisI GCNGC 3 cut(s) 303, 510, 712
BlsI GCNGC 3 cut(s) 304, 511, 713
Bme1390I CCNGG 2 cut(s) 130, 592
BmiI GGNNCC 1 cut(s) 776
BmrFI CCNGG 2 cut(s) 130, 592
BmsI GCATC 1 cut(s) 521
BoxI GACNNNNGTC 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 767
BpuMI CCSGG 2 cut(s) 130, 592
BsaI GGTCTC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 590
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 3 cut(s) 194, 340, 591
Bse118I RCCGGY 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 778
BseDI CCNNGG 1 cut(s) 590
BseLI CCNNNNNNNGG 3 cut(s) 194, 340, 591
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 1 cut(s) 778
BseXI GCAGC 3 cut(s) 314, 496, 698
BseYI CCCAGC 2 cut(s) 685, 714
BshFI GGCC 1 cut(s) 584
BsiSI CCGG 4 cut(s) 129, 385, 455, 592
BslFI GGGAC 1 cut(s) 612
BslI CCNNNNNNNGG 3 cut(s) 194, 340, 591
BsmAI GTCTC 2 cut(s) 255, 629
BsmFI GGGAC 1 cut(s) 612
BsnI GGCC 1 cut(s) 584
Bso31I GGTCTC 1 cut(s) 255
Bsp143I GATC 5 cut(s) 312, 451, 517, 733, 774
BspACI CCGC 2 cut(s) 630, 772
BspANI GGCC 1 cut(s) 584
BspCNI CTCAG 1 cut(s) 625
BspLI GGNNCC 1 cut(s) 776
BspPI GGATC 4 cut(s) 446, 512, 769, 782
BspTNI GGTCTC 1 cut(s) 255
BsrFI RCCGGY 1 cut(s) 384
BsrI ACTGG 1 cut(s) 778
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 590
BssMI GATC 5 cut(s) 312, 451, 517, 733, 774
Bst4CI ACNGT 5 cut(s) 104, 115, 235, 375, 612
BstAPI GCANNNNNTGC 1 cut(s) 20
BstDEI CTNAG 3 cut(s) 329, 633, 767
BstENI CCTNNNNNAGG 1 cut(s) 192
BstKTI GATC 5 cut(s) 315, 454, 520, 736, 777
BstMAI GTCTC 2 cut(s) 255, 629
BstMBI GATC 5 cut(s) 312, 451, 517, 733, 774
BstMWI GCNNNNNNNGC 3 cut(s) 20, 299, 720
BstPAI GACNNNNGTC 1 cut(s) 212
BstSCI CCNGG 2 cut(s) 128, 590
BstV1I GCAGC 3 cut(s) 314, 496, 698
BstX2I RGATCY 1 cut(s) 774
BstYI RGATCY 1 cut(s) 774
BsuRI GGCC 1 cut(s) 584
BtsIMutI CAGTG 1 cut(s) 617
CaiI CAGNNNCTG 1 cut(s) 449
Cfr10I RCCGGY 1 cut(s) 384
CviAII CATG 2 cut(s) 45, 205
DdeI CTNAG 3 cut(s) 329, 633, 767
DpnI GATC 5 cut(s) 314, 453, 519, 735, 776
DpnII GATC 5 cut(s) 312, 451, 517, 733, 774
EaeI YGGCCR 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 255
EcoNI CCTNNNNNAGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 50
FaeI CATG 2 cut(s) 48, 208
FaqI GGGAC 1 cut(s) 612
FatI CATG 2 cut(s) 44, 204
FauI CCCGC 1 cut(s) 637
Fnu4HI GCNGC 3 cut(s) 303, 510, 712
Fsp4HI GCNGC 3 cut(s) 303, 510, 712
GluI GCNGC 3 cut(s) 303, 510, 712
GsaI CCCAGC 2 cut(s) 689, 718
HaeIII GGCC 1 cut(s) 584
HapII CCGG 4 cut(s) 129, 385, 455, 592
Hin1II CATG 2 cut(s) 48, 208
HincII GTYRAC 1 cut(s) 706
HindII GTYRAC 1 cut(s) 706
HinfI GANTC 2 cut(s) 198, 493
HpaI GTTAAC 1 cut(s) 706
HpaII CCGG 4 cut(s) 129, 385, 455, 592
HphI GGTGA 3 cut(s) 151, 230, 760
Hpy166II GTNNAC 2 cut(s) 543, 706
Hpy188I TCNGA 1 cut(s) 517
Hpy188III TCNNGA 2 cut(s) 525, 737
Hpy8I GTNNAC 2 cut(s) 543, 706
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 3 cut(s) 331, 531, 638
HpyCH4III ACNGT 5 cut(s) 104, 115, 235, 375, 612
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 8 cut(s) 14, 48, 55, 255, 282, 293, 512, 601
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 299, 720
HpyF3I CTNAG 3 cut(s) 329, 633, 767
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 2 cut(s) 48, 208
KspAI GTTAAC 1 cut(s) 706
Kzo9I GATC 5 cut(s) 312, 451, 517, 733, 774
LmnI GCTCC 1 cut(s) 28
Lsp1109I GCAGC 3 cut(s) 314, 496, 698
LweI GCATC 1 cut(s) 521
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 4 cut(s) 104, 218, 479, 548
MalI GATC 5 cut(s) 314, 453, 519, 735, 776
MboI GATC 5 cut(s) 312, 451, 517, 733, 774
MboII GAAGA 2 cut(s) 385, 492
MflI RGATCY 1 cut(s) 774
MlsI TGGCCA 1 cut(s) 584
MluNI TGGCCA 1 cut(s) 584
MmeI TCCRAC 1 cut(s) 405
MnlI CCTC 5 cut(s) 167, 173, 198, 275, 334
Mox20I TGGCCA 1 cut(s) 584
Mph1103I ATGCAT 1 cut(s) 50
MscI TGGCCA 1 cut(s) 584
MseI TTAA 6 cut(s) 72, 360, 422, 489, 705, 758
Msp20I TGGCCA 1 cut(s) 584
MspA1I CMGCKG 1 cut(s) 632
MspI CCGG 4 cut(s) 129, 385, 455, 592
MspR9I CCNGG 2 cut(s) 130, 592
MwoI GCNNNNNNNGC 3 cut(s) 20, 299, 720
NciI CCSGG 2 cut(s) 130, 592
NdeII GATC 5 cut(s) 312, 451, 517, 733, 774
NlaIII CATG 2 cut(s) 48, 208
NlaIV GGNNCC 1 cut(s) 776
NmuCI GTSAC 1 cut(s) 218
NsiI ATGCAT 1 cut(s) 50
PfeI GAWTC 2 cut(s) 198, 493
PfoI TCCNGGA 1 cut(s) 128
PkrI GCNGC 3 cut(s) 304, 511, 713
PshAI GACNNNNGTC 1 cut(s) 212
PsiI TTATAA 1 cut(s) 465
PspFI CCCAGC 2 cut(s) 685, 714
PspN4I GGNNCC 1 cut(s) 776
PstNI CAGNNNCTG 1 cut(s) 449
PsuI RGATCY 1 cut(s) 774
SaqAI TTAA 6 cut(s) 72, 360, 422, 489, 705, 758
SatI GCNGC 3 cut(s) 303, 510, 712
Sau3AI GATC 5 cut(s) 312, 451, 517, 733, 774
ScrFI CCNGG 2 cut(s) 130, 592
SetI ASST 8 cut(s) 152, 159, 216, 267, 413, 451, 511, 768
SfaNI GCATC 1 cut(s) 521
SsiI CCGC 2 cut(s) 630, 772
StyD4I CCNGG 2 cut(s) 128, 590
TaaI ACNGT 5 cut(s) 104, 115, 235, 375, 612
TaiI ACGT 1 cut(s) 216
TfiI GAWTC 2 cut(s) 198, 493
Tru1I TTAA 6 cut(s) 72, 360, 422, 489, 705, 758
Tru9I TTAA 6 cut(s) 72, 360, 422, 489, 705, 758
TscAI CASTG 1 cut(s) 617
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 3 cut(s) 302, 509, 711
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 4 cut(s) 17, 33, 357, 550
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 617
XagI CCTNNNNNAGG 1 cut(s) 192
XapI RAATTY 3 cut(s) 6, 424, 663
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.