Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Reverse (-)

61229047 .. 61231865

Gene Structure 2819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0482400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGTGGTAAAGGTGTATGGCCCCTCCTATGCTTCTCCTAAACGTGTGTTAGTGTGCCTCGTTGAGAAGGAGGTTGAGTTTGAAACCATCCCCATTGATCTCTTCAAGCGAGAACATAAAGATCCTGAATTCCTCAAATTACAACCCTTTGGAGCAGTTCCTGTTATTCAAGATGGGGATTATACTTTATATGAATCACGTGCAATCATAAGATACTATGCAGAAAAGTACAAGTCGCAAGGGACTGATTTGCTGGGAAAGACAATCGAGGAAAGAGGTCTTGTGGAACAGTGGCTAGAGGTTGAAGCACAAAACTATCACCCATCAATTGATAACTTGGTCATTCACATCTTGTTTGCCTCGGCCCAGGGTTTCCCTTCAGACCCAAAGATCATTCAAGAGAGTGAGGAAAAGCTAGGCAAGGTGTTGGATGTGTATGAGGAGAGGCTGTCGAAGAGCAAGTACTTGGCTGGTGATTTTTTCAGCCTTGCTGATCTTAGCCACCTTCCATTTACCCAGTACTTGGTGGGTGCTGTAGGGAAAGATTATATGATAAAGAGCAGAAAGCATGTCTCTGCTTGGTGGGATGATATTAGCAACAGGCCATCGTGGAAGAAGGTCCTCGAGTTCGGTGCCCCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

214

Amino Acids

24.63

Weight (kDa)

5.62

Isoelectric Point (pI)

43.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N	PF02798	1 - 74	9.2e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	10 - 78	2.5e-11	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	14 - 75	7.4e-13	Glutathione S-transferase, N-terminal domain
GST_C	PF00043	131 - 202	1.8e-13	Glutathione S-transferase, C-terminal domain
GST_C_3	PF14497	135 - 207	2.9e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	632
AccB7I	CCANNNNNTGG	1 cut(s)	523
AclWI	GGATC	1 cut(s)	116
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	363
AcvI	CACGTG	1 cut(s)	200
AfaI	GTAC	3 cut(s)	230, 464, 521
AfiI	CCNNNNNNNGG	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	43
AgsI	TTSAA	5 cut(s)	83, 106, 170, 305, 398
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	577
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	3 cut(s)	19, 363, 602
ApoI	RAATTY	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	20, 364, 619
AsuHPI	GGTGA	2 cut(s)	311, 485
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	619
BaeGI	GKGCMC	1 cut(s)	637
BanI	GGYRCC	1 cut(s)	632
BarI	GAAGNNNNNNTAC	2 cut(s)	446, 478
BbrPI	CACGTG	1 cut(s)	200
BccI	CCATC	4 cut(s)	95, 167, 331, 613
BcgI	CGANNNNNNTGC	1 cut(s)	614
BciT130I	CCWGG	1 cut(s)	368
BcoDI	GTCTC	1 cut(s)	577
BfaI	CTAG	2 cut(s)	296, 416
BfmI	CTRYAG	1 cut(s)	534
BmcAI	AGTACT	2 cut(s)	464, 521
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	619
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	3 cut(s)	20, 364, 619
BmiI	GGNNCC	2 cut(s)	22, 634
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	1 cut(s)	511
BmuI	ACTGGG	1 cut(s)	511
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	3 cut(s)	360, 366, 367
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 434, 464
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	3 cut(s)	360, 366, 367
BseGI	GGATG	3 cut(s)	87, 436, 592
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseNI	ACTGG	1 cut(s)	517
BseRI	GAGGAG	1 cut(s)	455
BseSI	GKGCMC	1 cut(s)	637
BseYI	CCCAGC	1 cut(s)	253
BshFI	GGCC	3 cut(s)	21, 365, 604
BshNI	GGYRCC	1 cut(s)	632
BsiHKCI	CYCGRG	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	577
BsmFI	GGGAC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	21, 365, 604
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	1 cut(s)	637
Bsp143I	GATC	4 cut(s)	97, 121, 390, 493
BspANI	GGCC	3 cut(s)	21, 365, 604
BspLI	GGNNCC	2 cut(s)	22, 634
BspPI	GGATC	1 cut(s)	116
BspQI	GCTCTTC	1 cut(s)	449
BspT107I	GGYRCC	1 cut(s)	632
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	3 cut(s)	360, 366, 367
BssMI	GATC	4 cut(s)	97, 121, 390, 493
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	107, 449
BstBAI	YACGTR	1 cut(s)	200
BstDEI	CTNAG	1 cut(s)	497
BstF5I	GGATG	3 cut(s)	87, 436, 592
BstKTI	GATC	4 cut(s)	100, 124, 393, 496
BstMAI	GTCTC	1 cut(s)	577
BstMBI	GATC	4 cut(s)	97, 121, 390, 493
BstNI	CCWGG	1 cut(s)	368
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	366
BstSFI	CTRYAG	1 cut(s)	534
BstSLI	GKGCMC	1 cut(s)	637
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BsuRI	GGCC	3 cut(s)	21, 365, 604
BtsCI	GGATG	3 cut(s)	87, 436, 592
BtsIMutI	CAGTG	1 cut(s)	296
CaiI	CAGNNNCTG	1 cut(s)	161
Cfr13I	GGNCC	3 cut(s)	20, 364, 619
Csp6I	GTAC	3 cut(s)	229, 463, 520
CviAII	CATG	1 cut(s)	569
CviJI	RGCY	9 cut(s)	21, 295, 365, 415, 448, 470, 486, 501, 604
CviKI_1	RGCY	9 cut(s)	21, 295, 365, 415, 448, 470, 486, 501, 604
CviQI	GTAC	3 cut(s)	229, 463, 520
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	4 cut(s)	99, 123, 392, 495
DpnII	GATC	4 cut(s)	97, 121, 390, 493
Eam1104I	CTCTTC	2 cut(s)	107, 449
EarI	CTCTTC	2 cut(s)	107, 449
Eco47I	GGWCC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	363
Eco72I	CACGTG	1 cut(s)	200
Eco88I	CYCGRG	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	366
FaeI	CATG	1 cut(s)	572
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	568
FokI	GGATG	3 cut(s)	74, 443, 599
FspBI	CTAG	2 cut(s)	296, 416
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	3 cut(s)	21, 365, 604
Hin1II	CATG	1 cut(s)	572
HinfI	GANTC	1 cut(s)	194
HphI	GGTGA	2 cut(s)	311, 485
Hpy188I	TCNGA	1 cut(s)	382
Hpy188III	TCNNGA	3 cut(s)	125, 170, 398
HpyAV	CCTTC	4 cut(s)	61, 387, 515, 610
HpyCH4III	ACNGT	1 cut(s)	291
HpyCH4IV	ACGT	2 cut(s)	43, 199
HpyCH4V	TGCA	2 cut(s)	203, 221
HpyF3I	CTNAG	1 cut(s)	497
HpySE526I	ACGT	2 cut(s)	43, 199
Hsp92II	CATG	1 cut(s)	572
Kzo9I	GATC	4 cut(s)	97, 121, 390, 493
LguI	GCTCTTC	1 cut(s)	449
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	8 cut(s)	138, 174, 239, 353, 380, 456, 530, 586
MaeI	CTAG	2 cut(s)	296, 416
MaeII	ACGT	2 cut(s)	43, 199
MalI	GATC	4 cut(s)	99, 123, 392, 495
MboI	GATC	4 cut(s)	97, 121, 390, 493
MboII	GAAGA	3 cut(s)	94, 466, 625
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	637
MluCI	AATT	3 cut(s)	128, 137, 327
MmeI	TCCRAC	1 cut(s)	408
MseI	TTAA	1 cut(s)	643
MspR9I	CCNGG	1 cut(s)	368
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	368
NdeII	GATC	4 cut(s)	97, 121, 390, 493
NlaIII	CATG	1 cut(s)	572
NlaIV	GGNNCC	2 cut(s)	22, 634
NmeAIII	GCCGAG	1 cut(s)	341
NspI	RCATGY	1 cut(s)	572
PaeR7I	CTCGAG	1 cut(s)	623
PasI	CCCWGGG	1 cut(s)	367
PciSI	GCTCTTC	1 cut(s)	449
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	523
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
Ppu21I	YACGTR	1 cut(s)	200
PpuMI	RGGWCCY	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	1 cut(s)	366
PspCI	CACGTG	1 cut(s)	200
PspFI	CCCAGC	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	2 cut(s)	22, 634
PspPI	GGNCC	3 cut(s)	20, 364, 619
PspPPI	RGGWCCY	1 cut(s)	619
PspXI	VCTCGAGB	1 cut(s)	623
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	3 cut(s)	230, 464, 521
RsaNI	GTAC	3 cut(s)	229, 463, 520
SapI	GCTCTTC	1 cut(s)	449
SaqAI	TTAA	1 cut(s)	643
Sau3AI	GATC	4 cut(s)	97, 121, 390, 493
Sau96I	GGNCC	3 cut(s)	20, 364, 619
ScaI	AGTACT	2 cut(s)	464, 521
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	637
SfcI	CTRYAG	1 cut(s)	534
Sfr274I	CTCGAG	1 cut(s)	623
SinI	GGWCC	1 cut(s)	619
SlaI	CTCGAG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	3 cut(s)	128, 137, 327
SspMI	CTAG	2 cut(s)	296, 416
StyD4I	CCNGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	291
TaiI	ACGT	2 cut(s)	46, 202
TaqI	TCGA	3 cut(s)	267, 452, 624
TasI	AATT	3 cut(s)	128, 137, 327
TatI	WGTACW	3 cut(s)	228, 462, 519
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	1 cut(s)	643
Tru9I	TTAA	1 cut(s)	643
TscAI	CASTG	1 cut(s)	296
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	1 cut(s)	296
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	619
XapI	RAATTY	1 cut(s)	128
XceI	RCATGY	1 cut(s)	572
XhoI	CTCGAG	1 cut(s)	623
XspI	CTAG	2 cut(s)	296, 416
ZrmI	AGTACT	2 cut(s)	464, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.