Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

75887994 .. 75888848

Gene Structure 855 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG550400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTTCTTCTCCAAATCAATCCCTCTGTCTTTCTTGCTCTTCTGTCTTTTGCACCATGCAGCCTCTGGTGCTTCCCCACTTTATCATATCTGTTTCAGCAAGGCAAACTACACTGGCAGTAGTCCATACCATGCTAACTTGAACAAGATGCTCAATCGTTTATCCACCAAAGTCCCTCCAACAGGATTCGGGGTTGCTTCAACTGGTCTAGGTCCGAACAAAGTAAACGGACTAGCGCTATGCCGAGGCGACGTCTCAAGCCCAAAGTGTAAAACTTGTGTCATTGAAGCAAGCAAAGAGCTTCGTGCACGCTGCCCTCATAAAAAAGGAGCCATAATATGGTACGACCATTGCATGCTGAAGTACTCAAATGACAACTTCTTTGGGCAAATTGATAGCACAAACAAGTTCTATATGTGGAACACCAAGACCGTAAGCAATCCCACTCCATTCAATAAGAATGTTAAGAAATTGTTGAGTGGATTATCCAATAAAGCTTCTTCTAACCGAAAGTTTTATAGTACTGGTGAGCTACAGCTCGATAAATCGAACAAGTTGTATGGTTTAGTTCAGTGCACGGGGGACCTATCTCGCCTGGAATGTAAGAAGTGTCTTGATGTTGCAATAAGTGAACTGCCGAAATGTTGTGATGCGAAACGAGGCGGGCGCGTAGGAGGTGGGAGTTGTAACTTCCGATATGAACTTTCCCGGTTCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

239

Amino Acids

26.4

Weight (kDa)

9.56

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	4.7e-25	Salt stress response/antifungal
Stress-antifung	PF01657	144 - 235	9.2e-17	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccII	CGCG	1 cut(s)	669
AciI	CCGC	1 cut(s)	663
AcuI	CTGAAG	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	3 cut(s)	344, 365, 523
AfeI	AGCGCT	1 cut(s)	237
AfiI	CCNNNNNNNGG	2 cut(s)	182, 339
AgsI	TTSAA	4 cut(s)	142, 201, 287, 454
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	4 cut(s)	301, 497, 532, 538
AluI	AGCT	4 cut(s)	301, 497, 532, 538
Alw21I	GWGCWC	2 cut(s)	310, 578
Alw26I	GTCTC	1 cut(s)	259
Alw44I	GTGCAC	2 cut(s)	306, 574
AlwNI	CAGNNNCTG	1 cut(s)	65
Aor51HI	AGCGCT	1 cut(s)	237
ApaLI	GTGCAC	2 cut(s)	306, 574
ApeKI	GCWGC	2 cut(s)	59, 312
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AspLEI	GCGC	2 cut(s)	238, 669
AspS9I	GGNCC	2 cut(s)	212, 583
AsuC2I	CCSGG	1 cut(s)	709
AsuHPI	GGTGA	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	212, 583
BaeGI	GKGCMC	2 cut(s)	310, 578
Bbv12I	GWGCWC	2 cut(s)	310, 578
BbvI	GCAGC	2 cut(s)	71, 299
BciT130I	CCWGG	1 cut(s)	596
BcnI	CCSGG	1 cut(s)	709
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	2 cut(s)	209, 233
BfmI	CTRYAG	1 cut(s)	533
BfoI	RGCGCY	1 cut(s)	239
BisI	GCNGC	2 cut(s)	60, 313
BlsI	GCNGC	2 cut(s)	61, 314
BmcAI	AGTACT	2 cut(s)	365, 523
Bme1390I	CCNGG	2 cut(s)	596, 709
Bme18I	GGWCC	2 cut(s)	212, 583
BmgT120I	GGNCC	2 cut(s)	212, 583
BmiI	GGNNCC	2 cut(s)	331, 584
BmrFI	CCNGG	2 cut(s)	596, 709
BmsI	GCATC	2 cut(s)	138, 640
BpuEI	CTTGAG	1 cut(s)	241
BpuMI	CCSGG	1 cut(s)	709
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 339
Bse1I	ACTGG	3 cut(s)	118, 208, 529
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	1 cut(s)	244
BseLI	CCNNNNNNNGG	2 cut(s)	182, 339
BseMI	GCAATG	1 cut(s)	349
BseNI	ACTGG	3 cut(s)	118, 208, 529
BseSI	GKGCMC	2 cut(s)	310, 578
BseXI	GCAGC	2 cut(s)	71, 299
Bsh1236I	CGCG	1 cut(s)	669
BsiHKAI	GWGCWC	2 cut(s)	310, 578
BsiSI	CCGG	1 cut(s)	709
BslFI	GGGAC	2 cut(s)	158, 596
BslI	CCNNNNNNNGG	2 cut(s)	182, 339
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	158, 596
Bsp1286I	GDGCHC	2 cut(s)	310, 578
BspACI	CCGC	1 cut(s)	663
BspFNI	CGCG	1 cut(s)	669
BspLI	GGNNCC	2 cut(s)	331, 584
BspQI	GCTCTTC	1 cut(s)	44
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	118, 208, 529
BssECI	CCNNGG	1 cut(s)	244
BssNI	GRCGYC	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	1 cut(s)	44
BstACI	GRCGYC	1 cut(s)	252
BstC8I	GCNNGC	4 cut(s)	292, 310, 356, 665
BstENI	CCTNNNNNAGG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	669
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	238, 669
BstMAI	GTCTC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstNI	CCWGG	1 cut(s)	596
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	594, 707
BstSFI	CTRYAG	1 cut(s)	533
BstSLI	GKGCMC	2 cut(s)	310, 578
BstUI	CGCG	1 cut(s)	669
BstV1I	GCAGC	2 cut(s)	71, 299
BtsIMutI	CAGTG	2 cut(s)	111, 578
Cac8I	GCNNGC	4 cut(s)	292, 310, 356, 665
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	2 cut(s)	238, 669
Cfr13I	GGNCC	2 cut(s)	212, 583
Csp6I	GTAC	3 cut(s)	343, 364, 522
CviAII	CATG	3 cut(s)	56, 131, 355
CviJI	RGCY	7 cut(s)	62, 261, 301, 332, 497, 532, 538
CviKI_1	RGCY	7 cut(s)	62, 261, 301, 332, 497, 532, 538
CviQI	GTAC	3 cut(s)	343, 364, 522
Eam1104I	CTCTTC	1 cut(s)	44
EarI	CTCTTC	1 cut(s)	44
Eco47I	GGWCC	2 cut(s)	212, 583
Eco47III	AGCGCT	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	380
EcoNI	CCTNNNNNAGG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	594
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	3 cut(s)	59, 134, 358
FaqI	GGGAC	2 cut(s)	158, 596
FatI	CATG	3 cut(s)	55, 130, 354
FauI	CCCGC	1 cut(s)	656
Fnu4HI	GCNGC	2 cut(s)	60, 313
Fsp4HI	GCNGC	2 cut(s)	60, 313
FspBI	CTAG	2 cut(s)	209, 233
GlaI	GCGC	2 cut(s)	237, 668
GluI	GCNGC	2 cut(s)	60, 313
HaeII	RGCGCY	1 cut(s)	239
HapII	CCGG	1 cut(s)	709
HhaI	GCGC	2 cut(s)	238, 669
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	3 cut(s)	59, 134, 358
Hin6I	GCGC	2 cut(s)	236, 667
HinP1I	GCGC	2 cut(s)	236, 667
HindIII	AAGCTT	1 cut(s)	495
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	709
HphI	GGTGA	1 cut(s)	539
Hpy166II	GTNNAC	4 cut(s)	226, 308, 576, 632
Hpy188I	TCNGA	2 cut(s)	216, 695
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	4 cut(s)	226, 308, 576, 632
Hpy99I	CGWCG	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	6 cut(s)	52, 59, 308, 354, 576, 623
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	59, 134, 358
HspAI	GCGC	2 cut(s)	236, 667
LguI	GCTCTTC	1 cut(s)	44
LmnI	GCTCC	1 cut(s)	329
LpnPI	CCDG	7 cut(s)	51, 99, 168, 189, 510, 581, 608
Lsp1109I	GCAGC	2 cut(s)	71, 299
LweI	GCATC	2 cut(s)	138, 640
MaeI	CTAG	2 cut(s)	209, 233
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	686
MboII	GAAGA	2 cut(s)	31, 492
MhlI	GDGCHC	2 cut(s)	310, 578
MluCI	AATT	2 cut(s)	390, 470
MmeI	TCCRAC	1 cut(s)	203
MnlI	CCTC	7 cut(s)	33, 73, 186, 239, 327, 653, 668
MseI	TTAA	1 cut(s)	465
MspI	CCGG	1 cut(s)	709
MspR9I	CCNGG	2 cut(s)	596, 709
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	1 cut(s)	669
MwoI	GCNNNNNNNGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	709
NlaIII	CATG	3 cut(s)	59, 134, 358
NlaIV	GGNNCC	2 cut(s)	331, 584
NmeAIII	GCCGAG	1 cut(s)	269
NspI	RCATGY	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	358
PciSI	GCTCTTC	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	61, 314
PpuMI	RGGWCCY	1 cut(s)	583
Psp5II	RGGWCCY	1 cut(s)	583
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	331, 584
PspPI	GGNCC	2 cut(s)	212, 583
PspPPI	RGGWCCY	1 cut(s)	583
PstNI	CAGNNNCTG	1 cut(s)	65
RsaI	GTAC	3 cut(s)	344, 365, 523
RsaNI	GTAC	3 cut(s)	343, 364, 522
SapI	GCTCTTC	1 cut(s)	44
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	2 cut(s)	60, 313
Sau96I	GGNCC	2 cut(s)	212, 583
ScaI	AGTACT	2 cut(s)	365, 523
ScrFI	CCNGG	2 cut(s)	596, 709
SduI	GDGCHC	2 cut(s)	310, 578
SetI	ASST	8 cut(s)	214, 255, 303, 499, 534, 540, 588, 679
SfaNI	GCATC	2 cut(s)	138, 640
SfcI	CTRYAG	1 cut(s)	533
SinI	GGWCC	2 cut(s)	212, 583
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
SphI	GCATGC	1 cut(s)	358
Sse9I	AATT	2 cut(s)	390, 470
SsiI	CCGC	1 cut(s)	663
SspMI	CTAG	2 cut(s)	209, 233
StyD4I	CCNGG	2 cut(s)	594, 707
TaaI	ACNGT	1 cut(s)	433
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	540, 548
TasI	AATT	2 cut(s)	390, 470
TatI	WGTACW	2 cut(s)	363, 521
TfiI	GAWTC	1 cut(s)	186
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	2 cut(s)	118, 578
TseI	GCWGC	2 cut(s)	59, 312
TspDTI	ATGAA	1 cut(s)	714
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	2 cut(s)	118, 578
Van91I	CCANNNNNTGG	1 cut(s)	339
VneI	GTGCAC	2 cut(s)	306, 574
VpaK11BI	GGWCC	2 cut(s)	212, 583
XagI	CCTNNNNNAGG	1 cut(s)	180
XceI	RCATGY	1 cut(s)	358
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XspI	CTAG	2 cut(s)	209, 233
ZraI	GACGTC	1 cut(s)	253
ZrmI	AGTACT	2 cut(s)	365, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.