Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

77230702 .. 77234093

Gene Structure 3392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG561400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGTTTGCTCCAAATCAATCCCTCTTGGTTTCTTACTGTTCTGTCTTTTCCACCATGTTGCCATTGGTGCTTCCCCGCTTTACCATTTCTGTTTCAGCAAACAGAACTACACTGCCAATAGCCCATACGAGGCCAACTTGAATCAGTTGCTCGATCTTCTATACACCAAAGTCCCTCCTACTGGATTTGGATCTGGTTCAACAGGTCAAGACCCGAACCAAGTGAACGGGCTGGCGCTCTGCCGTGGTGATGTTTCAAGCAACAATTGCAAGACTTGTGTCGTCGACGCAAGCAAGAAGCTCGGTGAGCGCTGCCCAGATAGAAAAGGAGCCATAATATGGTATGATAATTGCATGTTAAAGTACTCAGATGTGAATTTCGTTGGCCAAATTGATAACGCAAACAGGTTCTATATGTGGAATGTTCAAGAAGTAGATAACCCTACACCTTTCAATGAGAAGTTCTTTACTACAAAAGTCGACCACAATGTGTTTGATATCTTATCGGCCGGCCACAAAATAAAGAAGATGATGAACAAAAACTGCGCACCAATTAACTACCGCCTATACTCTAATAACATGCGTTTAGTGTATGCGTTTCAAGTTACTCCAACAAATCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

207

Amino Acids

23.35

Weight (kDa)

8.68

Isoelectric Point (pI)

21.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	31 - 124	1.6e-26	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	547
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccI	GTMKAC	2 cut(s)	285, 480
AciI	CCGC	2 cut(s)	77, 562
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	3 cut(s)	385, 507, 511
AcsI	RAATTY	1 cut(s)	376
AdeI	CACNNNGTG	1 cut(s)	490
AfaI	GTAC	1 cut(s)	365
AfeI	AGCGCT	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	130, 182, 339
AgsI	TTSAA	6 cut(s)	142, 201, 258, 428, 454, 602
AluBI	AGCT	1 cut(s)	301
AluI	AGCT	1 cut(s)	301
AlwI	GGATC	1 cut(s)	199
Aor51HI	AGCGCT	1 cut(s)	311
AoxI	GGCC	4 cut(s)	132, 385, 507, 511
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	1 cut(s)	376
AspLEI	GCGC	3 cut(s)	238, 312, 548
AsuHPI	GGTGA	2 cut(s)	260, 317
BalI	TGGCCA	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	228
BcgI	CGANNNNNNTGC	2 cut(s)	283, 317
BfoI	RGCGCY	2 cut(s)	239, 313
BisI	GCNGC	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	314
BmcAI	AGTACT	1 cut(s)	365
BmiI	GGNNCC	1 cut(s)	331
BoxI	GACNNNNGTC	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	190
BsaJI	CCNNGG	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 182, 339
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	187
Bse8I	GATNNNNATC	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	190
BseLI	CCNNNNNNNGG	3 cut(s)	130, 182, 339
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	1 cut(s)	187
BseX3I	CGGCCG	1 cut(s)	507
BseXI	GCAGC	1 cut(s)	299
Bsh1285I	CGRYCG	1 cut(s)	510
BshFI	GGCC	4 cut(s)	134, 387, 509, 513
BsiEI	CGRYCG	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	510
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	3 cut(s)	130, 182, 339
BsmFI	GGGAC	1 cut(s)	158
BsnI	GGCC	4 cut(s)	134, 387, 509, 513
Bsp143I	GATC	2 cut(s)	154, 191
BspACI	CCGC	2 cut(s)	77, 562
BspANI	GGCC	4 cut(s)	134, 387, 509, 513
BspCNI	CTCAG	1 cut(s)	380
BspLI	GGNNCC	1 cut(s)	331
BspPI	GGATC	1 cut(s)	199
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	244
BssMI	GATC	2 cut(s)	154, 191
Bst4CI	ACNGT	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	267
BstC8I	GCNNGC	3 cut(s)	234, 292, 511
BstDEI	CTNAG	1 cut(s)	367
BstDSI	CCRYGG	1 cut(s)	244
BstH2I	RGCGCY	2 cut(s)	239, 313
BstHHI	GCGC	3 cut(s)	238, 312, 548
BstKTI	GATC	2 cut(s)	157, 194
BstMBI	GATC	2 cut(s)	154, 191
BstMCI	CGRYCG	1 cut(s)	510
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 267, 307
BstNSI	RCATGY	2 cut(s)	358, 583
BstPAI	GACNNNNGTC	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	299
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BstZI	CGGCCG	1 cut(s)	507
BsuRI	GGCC	4 cut(s)	134, 387, 509, 513
BtgI	CCRYGG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	3 cut(s)	234, 292, 511
CfoI	GCGC	3 cut(s)	238, 312, 548
Cfr10I	RCCGGY	1 cut(s)	509
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	364
CviAII	CATG	4 cut(s)	56, 355, 580, 621
CviJI	RGCY	8 cut(s)	123, 134, 232, 301, 332, 387, 509, 513
CviKI_1	RGCY	8 cut(s)	123, 134, 232, 301, 332, 387, 509, 513
CviQI	GTAC	1 cut(s)	364
DdeI	CTNAG	1 cut(s)	367
DpnI	GATC	2 cut(s)	156, 193
DpnII	GATC	2 cut(s)	154, 191
DraIII	CACNNNGTG	1 cut(s)	490
EaeI	YGGCCR	3 cut(s)	385, 507, 511
EagI	CGGCCG	1 cut(s)	507
EclXI	CGGCCG	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	499
Eco47III	AGCGCT	1 cut(s)	311
Eco52I	CGGCCG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	499
FaeI	CATG	4 cut(s)	59, 358, 583, 624
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	4 cut(s)	55, 354, 579, 620
FauI	CCCGC	1 cut(s)	84
FblI	GTMKAC	2 cut(s)	285, 480
Fnu4HI	GCNGC	1 cut(s)	313
FseI	GGCCGGCC	1 cut(s)	513
Fsp4HI	GCNGC	1 cut(s)	313
FspI	TGCGCA	1 cut(s)	547
GlaI	GCGC	3 cut(s)	237, 311, 547
GluI	GCNGC	1 cut(s)	313
HaeII	RGCGCY	2 cut(s)	239, 313
HaeIII	GGCC	4 cut(s)	134, 387, 509, 513
HapII	CCGG	1 cut(s)	510
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	3 cut(s)	238, 312, 548
Hin1II	CATG	4 cut(s)	59, 358, 583, 624
Hin6I	GCGC	3 cut(s)	236, 310, 546
HinP1I	GCGC	3 cut(s)	236, 310, 546
HincII	GTYRAC	2 cut(s)	286, 481
HindII	GTYRAC	2 cut(s)	286, 481
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	1 cut(s)	510
HphI	GGTGA	2 cut(s)	260, 317
Hpy166II	GTNNAC	3 cut(s)	226, 286, 481
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	2 cut(s)	209, 428
Hpy8I	GTNNAC	3 cut(s)	226, 286, 481
Hpy99I	CGWCG	2 cut(s)	287, 290
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	270, 354
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 267, 307
HpyF3I	CTNAG	1 cut(s)	367
Hsp92II	CATG	4 cut(s)	59, 358, 583, 624
HspAI	GCGC	3 cut(s)	236, 310, 546
KroI	GCCGGC	1 cut(s)	509
KroNI	GCCGGC	1 cut(s)	511
Kzo9I	GATC	2 cut(s)	154, 191
LmnI	GCTCC	2 cut(s)	14, 329
LpnPI	CCDG	7 cut(s)	168, 180, 189, 218, 330, 391, 523
Lsp1109I	GCAGC	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	2 cut(s)	156, 193
MboI	GATC	2 cut(s)	154, 191
MboII	GAAGA	2 cut(s)	149, 538
MfeI	CAATTG	1 cut(s)	265
MflI	RGATCY	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	5 cut(s)	265, 349, 376, 390, 552
MluNI	TGGCCA	1 cut(s)	387
MnlI	CCTC	3 cut(s)	33, 124, 186
Mox20I	TGGCCA	1 cut(s)	387
MroNI	GCCGGC	1 cut(s)	509
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	2 cut(s)	359, 555
Msp20I	TGGCCA	1 cut(s)	387
MspI	CCGG	1 cut(s)	510
MunI	CAATTG	1 cut(s)	265
MwoI	GCNNNNNNNGC	3 cut(s)	68, 267, 307
NaeI	GCCGGC	1 cut(s)	511
NdeII	GATC	2 cut(s)	154, 191
NgoMIV	GCCGGC	1 cut(s)	509
NlaIII	CATG	4 cut(s)	59, 358, 583, 624
NlaIV	GGNNCC	1 cut(s)	331
NsbI	TGCGCA	1 cut(s)	547
NspI	RCATGY	2 cut(s)	358, 583
PdiI	GCCGGC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	314
PshAI	GACNNNNGTC	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	331
PsuI	RGATCY	1 cut(s)	191
RigI	GGCCGGCC	1 cut(s)	513
RsaI	GTAC	1 cut(s)	365
RsaNI	GTAC	1 cut(s)	364
SalI	GTCGAC	2 cut(s)	284, 479
SaqAI	TTAA	2 cut(s)	359, 555
SatI	GCNGC	1 cut(s)	313
Sau3AI	GATC	2 cut(s)	154, 191
ScaI	AGTACT	1 cut(s)	365
SetI	ASST	4 cut(s)	208, 303, 410, 451
SgrDI	CGTCGACG	1 cut(s)	284
Sse9I	AATT	5 cut(s)	265, 349, 376, 390, 552
SsiI	CCGC	2 cut(s)	77, 562
TaaI	ACNGT	1 cut(s)	39
TaqI	TCGA	3 cut(s)	153, 285, 480
TasI	AATT	5 cut(s)	265, 349, 376, 390, 552
TatI	WGTACW	1 cut(s)	363
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	359, 555
Tru9I	TTAA	2 cut(s)	359, 555
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	1 cut(s)	312
TspDTI	ATGAA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	118
Van91I	CCANNNNNTGG	1 cut(s)	339
XapI	RAATTY	1 cut(s)	376
XceI	RCATGY	2 cut(s)	358, 583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	62
XmiI	GTMKAC	2 cut(s)	285, 480
ZrmI	AGTACT	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.