Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

11122118 .. 11122690

Gene Structure 573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG071900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTCAATCATTTATCCACCAAAGTCCCTCCAACTGGATTCGGGGTTGCTTCAACTGGTCAAGGTCCGAACAAAGTAAACGGACTAGCGCTATGCCGAGGCGATGTCTCAAGCCCAAACTGTAAGACTAGTATCATTGAAGCAAGCAAAGAGCTTCGTGCACGCTGCCCTCATAAAAAAGGAGCCATAATATGGTACGACCATTGCATGCTGAAATACTCAAATGGCAACTTCTTTGGGCAAATTGATAGCACAAACAAGTTCTATATGTGGAACACCGAGACCGTAAGCAATCCCAGACCATTCAATAAGAATGTTAACAAATTGTTGAGTGGGTTGTCTAATAAAGCTTCTTCTAACCGAAAGCTTTATAGTACTGGTGAGCTACAGCTCGATAAATGGAAAAAATTGTATGGTTTAGTTCAGTGCACGAGGGACCTATCTAGCCTGGAATGTAAGAAGTGTCTTGATGTTGCAATAAGTGAACTGCCGAAAGGTTCTGATGCGAAACGAGGCGGGCGCGTAGCAAGTGGGAGTTGTAACTTTCGATATGAACTCTCCCGCTTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

190

Amino Acids

21.03

Weight (kDa)

9.63

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stress-antifung	PF01657	2 - 75	3.5e-17	Salt stress response/antifungal
Stress-antifung	PF01657	95 - 186	2.6e-14	Salt stress response/antifungal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	192
AccII	CGCG	1 cut(s)	522
AciI	CCGC	2 cut(s)	516, 562
AfaI	GTAC	2 cut(s)	197, 376
AfeI	AGCGCT	1 cut(s)	90
AfiI	CCNNNNNNNGG	2 cut(s)	35, 192
AgsI	TTSAA	3 cut(s)	54, 140, 307
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	1 cut(s)	447
AluBI	AGCT	5 cut(s)	154, 350, 367, 385, 391
AluI	AGCT	5 cut(s)	154, 350, 367, 385, 391
Alw21I	GWGCWC	2 cut(s)	163, 431
Alw26I	GTCTC	2 cut(s)	112, 275
Alw44I	GTGCAC	2 cut(s)	159, 427
Aor51HI	AGCGCT	1 cut(s)	90
ApaLI	GTGCAC	2 cut(s)	159, 427
ApeKI	GCWGC	1 cut(s)	165
AspLEI	GCGC	2 cut(s)	91, 522
AspS9I	GGNCC	2 cut(s)	65, 436
AsuHPI	GGTGA	1 cut(s)	392
AvaII	GGWCC	2 cut(s)	65, 436
BaeGI	GKGCMC	2 cut(s)	163, 431
BauI	CACGAG	1 cut(s)	430
Bbv12I	GWGCWC	2 cut(s)	163, 431
BbvI	GCAGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	449
BcoDI	GTCTC	2 cut(s)	112, 275
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	3 cut(s)	86, 129, 444
BfmI	CTRYAG	1 cut(s)	386
BfoI	RGCGCY	1 cut(s)	92
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmcAI	AGTACT	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	2 cut(s)	65, 436
BmgT120I	GGNCC	2 cut(s)	65, 436
BmiI	GGNNCC	2 cut(s)	184, 437
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 192
Bse1I	ACTGG	3 cut(s)	40, 61, 382
Bse3DI	GCAATG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	35, 192
BseMI	GCAATG	1 cut(s)	202
BseNI	ACTGG	3 cut(s)	40, 61, 382
BseSI	GKGCMC	2 cut(s)	163, 431
BseXI	GCAGC	1 cut(s)	152
Bsh1236I	CGCG	1 cut(s)	522
BsiHKAI	GWGCWC	2 cut(s)	163, 431
BslFI	GGGAC	2 cut(s)	11, 449
BslI	CCNNNNNNNGG	2 cut(s)	35, 192
BsmAI	GTCTC	2 cut(s)	112, 275
BsmFI	GGGAC	2 cut(s)	11, 449
Bso31I	GGTCTC	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	163, 431
BspACI	CCGC	2 cut(s)	516, 562
BspFNI	CGCG	1 cut(s)	522
BspLI	GGNNCC	2 cut(s)	184, 437
BspTNI	GGTCTC	1 cut(s)	275
BsrDI	GCAATG	1 cut(s)	202
BsrI	ACTGG	3 cut(s)	40, 61, 382
BssECI	CCNNGG	1 cut(s)	97
BssSI	CACGAG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	122, 286
BstC8I	GCNNGC	4 cut(s)	145, 163, 209, 518
BstFNI	CGCG	1 cut(s)	522
BstH2I	RGCGCY	1 cut(s)	92
BstHHI	GCGC	2 cut(s)	91, 522
BstMAI	GTCTC	2 cut(s)	112, 275
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	386
BstSLI	GKGCMC	2 cut(s)	163, 431
BstUI	CGCG	1 cut(s)	522
BstV1I	GCAGC	1 cut(s)	152
BtgZI	GCGATG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	431
Cac8I	GCNNGC	4 cut(s)	145, 163, 209, 518
CfoI	GCGC	2 cut(s)	91, 522
Cfr13I	GGNCC	2 cut(s)	65, 436
Csp6I	GTAC	2 cut(s)	196, 375
CviAII	CATG	1 cut(s)	208
CviJI	RGCY	8 cut(s)	114, 154, 185, 350, 367, 385, 391, 447
CviKI_1	RGCY	8 cut(s)	114, 154, 185, 350, 367, 385, 391, 447
CviQI	GTAC	2 cut(s)	196, 375
Eco31I	GGTCTC	1 cut(s)	275
Eco47I	GGWCC	2 cut(s)	65, 436
Eco47III	AGCGCT	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	436
EcoRII	CCWGG	1 cut(s)	447
FaeI	CATG	1 cut(s)	211
FaqI	GGGAC	2 cut(s)	11, 449
FatI	CATG	1 cut(s)	207
FauI	CCCGC	2 cut(s)	509, 569
Fnu4HI	GCNGC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	3 cut(s)	86, 129, 444
GlaI	GCGC	2 cut(s)	90, 521
GluI	GCNGC	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	92
HhaI	GCGC	2 cut(s)	91, 522
Hin1II	CATG	1 cut(s)	211
Hin6I	GCGC	2 cut(s)	89, 520
HinP1I	GCGC	2 cut(s)	89, 520
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	2 cut(s)	348, 365
HinfI	GANTC	1 cut(s)	39
HpaI	GTTAAC	1 cut(s)	319
HphI	GGTGA	1 cut(s)	392
Hpy166II	GTNNAC	5 cut(s)	79, 161, 319, 429, 485
Hpy188I	TCNGA	2 cut(s)	69, 502
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	5 cut(s)	79, 161, 319, 429, 485
HpyCH4III	ACNGT	2 cut(s)	122, 286
HpyCH4V	TGCA	4 cut(s)	161, 207, 429, 476
Hsp92II	CATG	1 cut(s)	211
HspAI	GCGC	2 cut(s)	89, 520
KspAI	GTTAAC	1 cut(s)	319
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	6 cut(s)	21, 42, 310, 363, 434, 461
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	3 cut(s)	86, 129, 444
MaeIII	GTNAC	1 cut(s)	539
MboII	GAAGA	1 cut(s)	345
MhlI	GDGCHC	2 cut(s)	163, 431
MluCI	AATT	3 cut(s)	243, 323, 407
MmeI	TCCRAC	1 cut(s)	56
MnlI	CCTC	5 cut(s)	39, 92, 180, 426, 506
MseI	TTAA	1 cut(s)	318
MspR9I	CCNGG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	449
MvnI	CGCG	1 cut(s)	522
NlaIII	CATG	1 cut(s)	211
NlaIV	GGNNCC	2 cut(s)	184, 437
NmeAIII	GCCGAG	1 cut(s)	122
NspI	RCATGY	1 cut(s)	211
PaeI	GCATGC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	39
PflMI	CCANNNNNTGG	1 cut(s)	192
PkrI	GCNGC	1 cut(s)	167
PpuMI	RGGWCCY	1 cut(s)	436
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	1 cut(s)	447
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	184, 437
PspPI	GGNCC	2 cut(s)	65, 436
PspPPI	RGGWCCY	1 cut(s)	436
RsaI	GTAC	2 cut(s)	197, 376
RsaNI	GTAC	2 cut(s)	196, 375
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	166
Sau96I	GGNCC	2 cut(s)	65, 436
ScaI	AGTACT	1 cut(s)	376
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	2 cut(s)	163, 431
SetI	ASST	8 cut(s)	67, 156, 352, 369, 387, 393, 441, 499
SfaNI	GCATC	1 cut(s)	493
SfcI	CTRYAG	1 cut(s)	386
SinI	GGWCC	2 cut(s)	65, 436
SmlI	CTYRAG	1 cut(s)	109
SmoI	CTYRAG	1 cut(s)	109
SpeI	ACTAGT	1 cut(s)	128
SphI	GCATGC	1 cut(s)	211
Sse9I	AATT	3 cut(s)	243, 323, 407
SsiI	CCGC	2 cut(s)	516, 562
SspMI	CTAG	3 cut(s)	86, 129, 444
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	2 cut(s)	122, 286
TaqI	TCGA	2 cut(s)	393, 547
TasI	AATT	3 cut(s)	243, 323, 407
TatI	WGTACW	1 cut(s)	374
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	431
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	567
TspGWI	ACGGA	1 cut(s)	96
TspRI	CASTG	1 cut(s)	431
Van91I	CCANNNNNTGG	1 cut(s)	192
VneI	GTGCAC	2 cut(s)	159, 427
VpaK11BI	GGWCC	2 cut(s)	65, 436
XceI	RCATGY	1 cut(s)	211
XspI	CTAG	3 cut(s)	86, 129, 444
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.