Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0000899

Physical Location & Seq

Genomic Coordinates Forward (+)

8929233 .. 8930627

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G109800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTGGGACTTTGTGCAAATTGTTGTGGTGGCGACATGTGTCTGTGGTTCTAGGTTTTGTAGTTTGAGAGCATCGGCAGCCGTTTCGGTAGGCGACTATTGCTTTGGAGAGAGTATTTTAAGCCGAATATGCTCGGGCGATTATGGTGTAAACACATCGCTTGGTGCTTCACTTTTCCATTTTTGTTTCAGCAAGGAAAACTACACTGCCCATAGCCCATATGATGCTAACTTGATTCAGTTGTTCAATCTTCTGTACACAAAAGTTCCTCCTACTGGATTTGGCCTTGGATCAACTGGTAAAGGCCAAAACCAAGCGAATGGGCTAGCCCTATGCCGCGGGGATGTCTCAAGCCAAGATTGCAAGACTTGTGTCGTTGAAGCAAGCAAAGAGATCAGCGCTGCCCTATACTCAAATGTGAAATTTGCTGGGAAAGTTGATTACAAAAACAAGTTTTCTTTGTGGAATGGCTACAAAGTAGATGATCCCATGCCATTCAATGCGAAAGTTAAGGAACTGTTAAGCGGGTTATCTACTAAAGCTTCTTCTAATCCAAAGTTTTATGCTACTGGTGAGCTAGTGCTCAGCTCTTGGGAAACACTATATGGTCTGACCCAATGTACTAGAGACCTCTATAGTTCCGATTGTAAGAAGTGTCTTGATGATGCAATAAGCGAATTGCCAAATTGTTGTGATGGACAACGAGGTGGGCGTGTTGTGGGTGGGAGTTGTAACTTTCGATATGAACTTTACCCCATTGTTGATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0030312 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1204 Stress-antifung

Protein Analysis

257

Amino Acids

27.8

Weight (kDa)

6.69

Isoelectric Point (pI)

21.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22060
fragaria_vesca	FvH4_2g10161
malus_domestica	MD05G1056000.v1.1 MD05G1056300.v1.1 MD10G1064400.v1.1
prunus_persica	Prupe.3G109800_v2.0.a1 Prupe.3G110100_v2.0.a1 Prupe.3G110200_v2.0.a1 Prupe.3G110300_v2.0.a1 Prupe.8G086600_v2.0.a1
pyrus_communis	pycom05g04770 pycom05g04780
rosa_chinensis	RchiOBHm_Chr1g0328011 RchiOBHm_Chr1g0328031 RchiOBHm_Chr2g0158681 RchiOBHm_Chr2g0160231 RchiOBHm_Chr2g0160251
rosa_laevigata	RLG00000014015 RLG00000021106 RLG00000021206 RLG00000021207 RLG00000029943 RLG00000029944 RLG00000029946 RLG00000029948
rosa_multiflora	Rmu_co8269469.1_g000001 Rmu_co8408147.1_g000001 Rmu_sc0000403.1_g000003 Rmu_sc0008269.1_g000008 Rmu_sc0020806.1_g000002
rosa_roxburghii	Rroxscaffold_2G00091070 Rroxscaffold_2G00091110 Rroxscaffold_4G00321960 Rroxscaffold_4G00321970 Rroxscaffold_4G00321980 Rroxscaffold_4G00322000 Rroxscaffold_4G00322030 Rroxscaffold_7G00200860 Rroxscaffold_7G00200940
rosa_rugosa	Rorug01G0073200 Rorug01G0073200 Rorug01G0073300 Rorug02G0471400 Rorug02G0472000 Rorug02G0482400 Rorug02G0482400
rosa_samantha	Rh1BG071900 Rh1BG072100 Rh2AG537200 Rh2AG547800 Rh2BG550400 Rh2BG561200 Rh2BG561400 Rh2CG520900 Rh2CG531800 Rh2CG532100 Rh6AG153200 Rh6CG149000
rosa_wichuraiana	Rw0G019500 Rw1G006970 Rw1G006980 Rw1G006990 Rw2G044480 Rw2G045320 Rw6G013180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	339
AciI	CCGC	3 cut(s)	337, 339, 525
AclWI	GGATC	3 cut(s)	298, 479, 758
AcsI	RAATTY	1 cut(s)	422
AfaI	GTAC	2 cut(s)	257, 622
AfeI	AGCGCT	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflIII	ACRYGT	1 cut(s)	35
AgsI	TTSAA	3 cut(s)	247, 380, 499
AluBI	AGCT	3 cut(s)	542, 577, 588
AluI	AGCT	3 cut(s)	542, 577, 588
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	2 cut(s)	352, 621
AlwI	GGATC	3 cut(s)	298, 479, 758
Ama87I	CYCGRG	1 cut(s)	133
Aor51HI	AGCGCT	1 cut(s)	400
AoxI	GGCC	2 cut(s)	283, 304
ApeKI	GCWGC	2 cut(s)	77, 401
ApoI	RAATTY	1 cut(s)	422
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AspLEI	GCGC	1 cut(s)	401
AsuHPI	GGTGA	1 cut(s)	584
AsuNHI	GCTAGC	1 cut(s)	325
AvaI	CYCGRG	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	89, 388
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	66, 100
BcoDI	GTCTC	2 cut(s)	352, 621
BfaI	CTAG	4 cut(s)	51, 326, 578, 624
BfmI	CTRYAG	1 cut(s)	634
BfoI	RGCGCY	1 cut(s)	402
BisI	GCNGC	3 cut(s)	78, 337, 402
BlpI	GCTNAGC	1 cut(s)	584
BlsI	GCNGC	3 cut(s)	79, 338, 403
BmeT110I	CYCGRG	1 cut(s)	133
BmsI	GCATC	3 cut(s)	80, 214, 655
BmtI	GCTAGC	1 cut(s)	329
BoxI	GACNNNNGTC	2 cut(s)	38, 371
Bpu1102I	GCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	1 cut(s)	334
BsaI	GGTCTC	1 cut(s)	621
BsaJI	CCNNGG	2 cut(s)	286, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	3 cut(s)	280, 301, 574
BseDI	CCNNGG	2 cut(s)	286, 337
BseGI	GGATG	1 cut(s)	349
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	598
BseNI	ACTGG	3 cut(s)	280, 301, 574
BseXI	GCAGC	2 cut(s)	89, 388
BseYI	CCCAGC	1 cut(s)	428
Bsh1236I	CGCG	1 cut(s)	339
BshFI	GGCC	2 cut(s)	285, 306
BsiHKAI	GWGCWC	1 cut(s)	585
BsiHKCI	CYCGRG	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	2 cut(s)	352, 621
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	285, 306
Bso31I	GGTCTC	1 cut(s)	621
BsoBI	CYCGRG	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	290, 393, 484, 763
Bsp1720I	GCTNAGC	1 cut(s)	584
BspACI	CCGC	3 cut(s)	337, 339, 525
BspANI	GGCC	2 cut(s)	285, 306
BspCNI	CTCAG	1 cut(s)	597
BspFNI	CGCG	1 cut(s)	339
BspOI	GCTAGC	1 cut(s)	329
BspPI	GGATC	3 cut(s)	298, 479, 758
BspTNI	GGTCTC	1 cut(s)	621
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	3 cut(s)	280, 301, 574
BssECI	CCNNGG	2 cut(s)	286, 337
BssMI	GATC	4 cut(s)	290, 393, 484, 763
BssT1I	CCWWGG	1 cut(s)	286
Bst4CI	ACNGT	1 cut(s)	519
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	2 cut(s)	327, 385
BstDEI	CTNAG	1 cut(s)	584
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	1 cut(s)	349
BstFNI	CGCG	1 cut(s)	339
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	4 cut(s)	293, 396, 487, 766
BstMAI	GTCTC	2 cut(s)	352, 621
BstMBI	GATC	4 cut(s)	290, 393, 484, 763
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 99, 129, 360
BstNSI	RCATGY	1 cut(s)	39
BstPAI	GACNNNNGTC	2 cut(s)	38, 371
BstSFI	CTRYAG	1 cut(s)	634
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	89, 388
BstXI	CCANNNNNNTGG	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	285, 306
BtgI	CCRYGG	1 cut(s)	337
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	349
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
Cac8I	GCNNGC	2 cut(s)	327, 385
CfoI	GCGC	1 cut(s)	401
Cfr42I	CCGCGG	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	256, 621
CviAII	CATG	2 cut(s)	36, 490
CviQI	GTAC	2 cut(s)	256, 621
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	4 cut(s)	292, 395, 486, 765
DpnII	GATC	4 cut(s)	290, 393, 484, 763
Eco130I	CCWWGG	1 cut(s)	286
Eco31I	GGTCTC	1 cut(s)	621
Eco47III	AGCGCT	1 cut(s)	400
Eco88I	CYCGRG	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	2 cut(s)	39, 493
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	35, 489
FauI	CCCGC	2 cut(s)	332, 518
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	78, 337, 402
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	3 cut(s)	78, 337, 402
FspBI	CTAG	4 cut(s)	51, 326, 578, 624
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	3 cut(s)	78, 337, 402
GsaI	CCCAGC	1 cut(s)	432
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	285, 306
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	39, 493
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	1 cut(s)	584
Hpy166II	GTNNAC	2 cut(s)	151, 258
Hpy188I	TCNGA	2 cut(s)	612, 643
Hpy188III	TCNNGA	1 cut(s)	659
Hpy8I	GTNNAC	2 cut(s)	151, 258
HpyCH4III	ACNGT	1 cut(s)	519
HpyCH4V	TGCA	3 cut(s)	16, 363, 668
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 99, 129, 360
HpyF3I	CTNAG	1 cut(s)	584
Hsp92II	CATG	2 cut(s)	39, 493
HspAI	GCGC	1 cut(s)	399
KspI	CCGCGG	1 cut(s)	340
Kzo9I	GATC	4 cut(s)	290, 393, 484, 763
LpnPI	CCDG	4 cut(s)	261, 282, 414, 555
Lsp1109I	GCAGC	2 cut(s)	89, 388
LweI	GCATC	3 cut(s)	80, 214, 655
MaeI	CTAG	4 cut(s)	51, 326, 578, 624
MaeIII	GTNAC	1 cut(s)	731
MalI	GATC	4 cut(s)	292, 395, 486, 765
MboI	GATC	4 cut(s)	290, 393, 484, 763
MboII	GAAGA	2 cut(s)	242, 537
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	4 cut(s)	18, 422, 677, 685
MnlI	CCTC	3 cut(s)	279, 641, 698
MseI	TTAA	4 cut(s)	119, 510, 521, 769
MspA1I	CMGCKG	1 cut(s)	339
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	4 cut(s)	77, 99, 129, 360
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	4 cut(s)	290, 393, 484, 763
NheI	GCTAGC	1 cut(s)	325
NlaIII	CATG	2 cut(s)	39, 493
NspI	RCATGY	1 cut(s)	39
PciI	ACATGT	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	709
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	3 cut(s)	79, 338, 403
PscI	ACATGT	1 cut(s)	35
PshAI	GACNNNNGTC	2 cut(s)	38, 371
PspFI	CCCAGC	1 cut(s)	428
RsaI	GTAC	2 cut(s)	257, 622
RsaNI	GTAC	2 cut(s)	256, 621
SacII	CCGCGG	1 cut(s)	340
SaqAI	TTAA	4 cut(s)	119, 510, 521, 769
SatI	GCNGC	3 cut(s)	78, 337, 402
Sau3AI	GATC	4 cut(s)	290, 393, 484, 763
SduI	GDGCHC	1 cut(s)	585
SetI	ASST	6 cut(s)	56, 544, 579, 590, 633, 709
SfaNI	GCATC	3 cut(s)	80, 214, 655
SfcI	CTRYAG	1 cut(s)	634
Sfr303I	CCGCGG	1 cut(s)	340
SgrBI	CCGCGG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	4 cut(s)	18, 422, 677, 685
SsiI	CCGC	3 cut(s)	337, 339, 525
SspMI	CTAG	4 cut(s)	51, 326, 578, 624
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	1 cut(s)	519
TaqI	TCGA	1 cut(s)	739
TasI	AATT	4 cut(s)	18, 422, 677, 685
TatI	WGTACW	2 cut(s)	255, 620
TauI	GCSGC	1 cut(s)	339
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	4 cut(s)	119, 510, 521, 769
Tru9I	TTAA	4 cut(s)	119, 510, 521, 769
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	2 cut(s)	77, 401
TspDTI	ATGAA	1 cut(s)	759
TspRI	CASTG	1 cut(s)	211
XapI	RAATTY	1 cut(s)	422
XceI	RCATGY	1 cut(s)	39
XspI	CTAG	4 cut(s)	51, 326, 578, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.